Clone LD12420 Report

Search the DGRC for LD12420

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:124
Well:20
Vector:pBS SK-
Associated Gene/Transcriptrept-RA
Protein status:LD12420.pep: gold
Preliminary Size:1905
Sequenced Size:1776

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9750 2001-10-10 Blastp of sequenced clone
CG9750 2003-01-01 Sim4 clustering to Release 3
rept 2008-04-29 Release 5.5 accounting
rept 2008-08-15 Release 5.9 accounting
rept 2008-12-18 5.12 accounting

Clone Sequence Records

LD12420.complete Sequence

1776 bp (1776 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061155

> LD12420.complete
CGAACTTTCAACACTACTCCAAGCAGGCCGGTAATTTCATATACGAATTT
TATGCTTAGCAACTTATTTAAGCCCAGTAAACAACTAGTAAGCCACTGAA
AAGATCGCACAAGAGTACAACTCCCGACCAGTGATACAGTAGACAGAATC
AAAAGCACAAAATGGCCGAGACCGAGAAAATCGAGGTTCGCGACGTGACT
CGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGACTGGA
CGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCAGAAGG
ACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGGGCAAG
ATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGCAAAAC
GGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCCATTCA
CTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGACCGAG
GCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAGGAGGA
AACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACGCCCCG
CCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCACCGAG
ATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTCATGAA
AGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTCCGGAA
AGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACGACGCC
ACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTTCAAAA
ACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGTTATCA
ATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTGGAGAG
ATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAGTGGCG
CGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGACGAGG
TGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCCTGGAG
TCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATCACTCG
TATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGATCTAC
TCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGGAGGTT
AAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATGCACCC
GGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTTACGCT
ACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCCGCAAG
GCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTCTTCCT
GGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGACTACA
TGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTGGAGGC
GGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCCATGGA
GCACTAGAGTCTAAACTGACATCGCAGCAACCCCCCAGTACATTCTCATG
ACTATTTTATGATCAATAAATAAGTTTCCTTGTATCTATGATTAAATTAA
ATGCCTACGAATTTGGTCATGGTTTTATAACGATTGTAATTAATAAACCA
TTATCAGCAAAAAAAAAAAAAAAAAA

LD12420.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RA 1769 rept-RA 7..1765 1..1759 8795 100 Plus
rept.a 1851 rept.a 151..1822 88..1759 8360 100 Plus
rept.a 1851 rept.a 122..151 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19244817..19246574 1..1758 8715 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19255354..19257112 1..1759 8795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19248454..19250212 1..1759 8795 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:50:51 has no hits.

LD12420.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:12 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19244817..19246574 1..1758 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:25 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 162..1607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:14 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 162..1607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:43:21 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 162..1607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:17 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 162..1607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:31 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 162..1607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:50 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 7..1764 1..1758 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:14 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 7..1764 1..1758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:21 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 15..1772 1..1758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:17 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 7..1764 1..1758 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:31 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 15..1772 1..1758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:12 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19255354..19257111 1..1758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:12 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19255354..19257111 1..1758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:12 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19255354..19257111 1..1758 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:21 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19248454..19250211 1..1758 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:19 Download gff for LD12420.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19248454..19250211 1..1758 100   Plus

LD12420.pep Sequence

Translation from 161 to 1606

> LD12420.pep
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*

LD12420.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23663-PA 481 GF23663-PA 1..481 1..481 2503 98.3 Plus
Dana\GF17460-PA 456 GF17460-PA 5..456 8..448 933 44.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16024-PA 481 GG16024-PA 1..481 1..481 2518 99.2 Plus
Dere\GG17489-PA 456 GG17489-PA 5..456 8..448 948 44.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17165-PA 483 GH17165-PA 1..483 1..481 2440 96.5 Plus
Dgri\GH19121-PA 456 GH19121-PA 5..456 8..448 941 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
rept-PB 481 CG9750-PB 1..481 1..481 2427 100 Plus
rept-PC 481 CG9750-PC 1..481 1..481 2427 100 Plus
rept-PA 481 CG9750-PA 1..481 1..481 2427 100 Plus
pont-PA 456 CG4003-PA 5..455 8..447 980 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11779-PA 483 GI11779-PA 1..483 1..481 2427 95.9 Plus
Dmoj\GI23576-PA 456 GI23576-PA 5..456 8..448 947 44.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20924-PA 482 GL20924-PA 1..482 1..481 2402 95.6 Plus
Dper\GL23687-PA 456 GL23687-PA 5..456 8..448 942 45.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22008-PA 480 GA22008-PA 1..480 1..481 2427 95.8 Plus
Dpse\GA17841-PA 456 GA17841-PA 5..456 8..448 946 45.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15014-PA 481 GM15014-PA 1..481 1..481 2535 100 Plus
Dsec\GM23872-PA 456 GM23872-PA 5..456 8..448 948 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14791-PA 481 GD14791-PA 1..481 1..481 2535 100 Plus
Dsim\GD18681-PA 456 GD18681-PA 5..456 8..448 948 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13482-PA 482 GJ13482-PA 1..482 1..481 2393 96.1 Plus
Dvir\GJ23553-PA 456 GJ23553-PA 5..456 8..448 950 44.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20167-PA 480 GK20167-PA 1..480 1..481 2414 95.4 Plus
Dwil\GK12828-PA 456 GK12828-PA 5..456 8..448 940 44.7 Plus
Dwil\GK25572-PA 132 GK25572-PA 21..132 363..481 465 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23076-PA 481 GE23076-PA 1..481 1..481 2529 99.6 Plus
Dyak\GE19593-PA 183 GE19593-PA 1..183 299..481 977 99.5 Plus
Dyak\GE26023-PA 456 GE26023-PA 5..456 8..448 952 45.2 Plus
Dyak\GE19592-PA 86 GE19592-PA 1..76 1..76 377 98.7 Plus

LD12420.hyp Sequence

Translation from 161 to 1606

> LD12420.hyp
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*

LD12420.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
rept-PB 481 CG9750-PB 1..481 1..481 2427 100 Plus
rept-PC 481 CG9750-PC 1..481 1..481 2427 100 Plus
rept-PA 481 CG9750-PA 1..481 1..481 2427 100 Plus
pont-PA 456 CG4003-PA 5..455 8..447 980 45.3 Plus