BDGP Sequence Production Resources |
Search the DGRC for LD12420
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 124 |
Well: | 20 |
Vector: | pBS SK- |
Associated Gene/Transcript | rept-RA |
Protein status: | LD12420.pep: gold |
Preliminary Size: | 1905 |
Sequenced Size: | 1776 |
Gene | Date | Evidence |
---|---|---|
CG9750 | 2001-10-10 | Blastp of sequenced clone |
CG9750 | 2003-01-01 | Sim4 clustering to Release 3 |
rept | 2008-04-29 | Release 5.5 accounting |
rept | 2008-08-15 | Release 5.9 accounting |
rept | 2008-12-18 | 5.12 accounting |
1776 bp (1776 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061155
> LD12420.complete CGAACTTTCAACACTACTCCAAGCAGGCCGGTAATTTCATATACGAATTT TATGCTTAGCAACTTATTTAAGCCCAGTAAACAACTAGTAAGCCACTGAA AAGATCGCACAAGAGTACAACTCCCGACCAGTGATACAGTAGACAGAATC AAAAGCACAAAATGGCCGAGACCGAGAAAATCGAGGTTCGCGACGTGACT CGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGACTGGA CGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCAGAAGG ACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGGGCAAG ATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGCAAAAC GGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCCATTCA CTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGACCGAG GCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAGGAGGA AACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACGCCCCG CCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCACCGAG ATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTCATGAA AGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTCCGGAA AGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACGACGCC ACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTTCAAAA ACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGTTATCA ATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTGGAGAG ATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAGTGGCG CGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGACGAGG TGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCCTGGAG TCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATCACTCG TATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGATCTAC TCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGGAGGTT AAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATGCACCC GGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTTACGCT ACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCCGCAAG GCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTCTTCCT GGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGACTACA TGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTGGAGGC GGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCCATGGA GCACTAGAGTCTAAACTGACATCGCAGCAACCCCCCAGTACATTCTCATG ACTATTTTATGATCAATAAATAAGTTTCCTTGTATCTATGATTAAATTAA ATGCCTACGAATTTGGTCATGGTTTTATAACGATTGTAATTAATAAACCA TTATCAGCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19244817..19246574 | 1..1758 | 8715 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19255354..19257112 | 1..1759 | 8795 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19248454..19250212 | 1..1759 | 8795 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19244817..19246574 | 1..1758 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 1..1446 | 162..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 1..1446 | 162..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 1..1446 | 162..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 1..1446 | 162..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 1..1446 | 162..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 7..1764 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 7..1764 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 15..1772 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 7..1764 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rept-RA | 15..1772 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19255354..19257111 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19255354..19257111 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19255354..19257111 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19248454..19250211 | 1..1758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19248454..19250211 | 1..1758 | 100 | Plus |
Translation from 161 to 1606
> LD12420.pep MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23663-PA | 481 | GF23663-PA | 1..481 | 1..481 | 2503 | 98.3 | Plus |
Dana\GF17460-PA | 456 | GF17460-PA | 5..456 | 8..448 | 933 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16024-PA | 481 | GG16024-PA | 1..481 | 1..481 | 2518 | 99.2 | Plus |
Dere\GG17489-PA | 456 | GG17489-PA | 5..456 | 8..448 | 948 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17165-PA | 483 | GH17165-PA | 1..483 | 1..481 | 2440 | 96.5 | Plus |
Dgri\GH19121-PA | 456 | GH19121-PA | 5..456 | 8..448 | 941 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rept-PB | 481 | CG9750-PB | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PC | 481 | CG9750-PC | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PA | 481 | CG9750-PA | 1..481 | 1..481 | 2427 | 100 | Plus |
pont-PA | 456 | CG4003-PA | 5..455 | 8..447 | 980 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11779-PA | 483 | GI11779-PA | 1..483 | 1..481 | 2427 | 95.9 | Plus |
Dmoj\GI23576-PA | 456 | GI23576-PA | 5..456 | 8..448 | 947 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20924-PA | 482 | GL20924-PA | 1..482 | 1..481 | 2402 | 95.6 | Plus |
Dper\GL23687-PA | 456 | GL23687-PA | 5..456 | 8..448 | 942 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22008-PA | 480 | GA22008-PA | 1..480 | 1..481 | 2427 | 95.8 | Plus |
Dpse\GA17841-PA | 456 | GA17841-PA | 5..456 | 8..448 | 946 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15014-PA | 481 | GM15014-PA | 1..481 | 1..481 | 2535 | 100 | Plus |
Dsec\GM23872-PA | 456 | GM23872-PA | 5..456 | 8..448 | 948 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14791-PA | 481 | GD14791-PA | 1..481 | 1..481 | 2535 | 100 | Plus |
Dsim\GD18681-PA | 456 | GD18681-PA | 5..456 | 8..448 | 948 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13482-PA | 482 | GJ13482-PA | 1..482 | 1..481 | 2393 | 96.1 | Plus |
Dvir\GJ23553-PA | 456 | GJ23553-PA | 5..456 | 8..448 | 950 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20167-PA | 480 | GK20167-PA | 1..480 | 1..481 | 2414 | 95.4 | Plus |
Dwil\GK12828-PA | 456 | GK12828-PA | 5..456 | 8..448 | 940 | 44.7 | Plus |
Dwil\GK25572-PA | 132 | GK25572-PA | 21..132 | 363..481 | 465 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23076-PA | 481 | GE23076-PA | 1..481 | 1..481 | 2529 | 99.6 | Plus |
Dyak\GE19593-PA | 183 | GE19593-PA | 1..183 | 299..481 | 977 | 99.5 | Plus |
Dyak\GE26023-PA | 456 | GE26023-PA | 5..456 | 8..448 | 952 | 45.2 | Plus |
Dyak\GE19592-PA | 86 | GE19592-PA | 1..76 | 1..76 | 377 | 98.7 | Plus |
Translation from 161 to 1606
> LD12420.hyp MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rept-PB | 481 | CG9750-PB | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PC | 481 | CG9750-PC | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PA | 481 | CG9750-PA | 1..481 | 1..481 | 2427 | 100 | Plus |
pont-PA | 456 | CG4003-PA | 5..455 | 8..447 | 980 | 45.3 | Plus |