Clone LD12604 Report

Search the DGRC for LD12604

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:126
Well:4
Vector:pBS SK-
Associated Gene/TranscriptCG40191-RA
Protein status:LD12604.pep: gold
Preliminary Size:1586
Sequenced Size:1538

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17676 2002-01-01 Sim4 clustering to Release 2
CG40191 2002-05-10 Blastp of sequenced clone
CG40191 2003-01-01 Sim4 clustering to Release 3
CG40191 2008-04-29 Release 5.5 accounting
CG40191 2008-08-15 Release 5.9 accounting
CG40191 2008-12-18 5.12 accounting

Clone Sequence Records

LD12604.complete Sequence

1538 bp (1538 high quality bases) assembled on 2002-05-10

GenBank Submission: AY102674

> LD12604.complete
AGACAGCTTACAAAACAAAAAATCGAAAACTTGGGGTTTGAATTAAACAT
TTAATAGTCAATTATTTCTATTTGGCATATCCCTTTTTAGTTTTTACTGC
GCTTGGTAACGCCTAATGGTGTGCATTACCATACAAAAATTGTATGAACT
AAAAAAGAGTGTTTCTCTTCTCATCGTTTCTAAAAACCTCTGCATGGTAA
TGCCGGCAGCTTGACGATTTTTTTAAAATTATTTATTTAGAAATGGGGCG
ATTTAAGTTATGTGCTTCGCCGAGAGAGGTTATGAAGTACGAAGACTTTA
TAAAACGCATTCGAAAAAGCCTCTACTATGGCGTTGGAACACCAGACACA
GAAATGTCGGTCTCCTTACCCTTTGCGGAGTACGCGGCAGATTTGTTTTC
GGAGACTCATCGCGGGCATTCTTTGCATCGCCTAAGTTGCGTATCTGCTG
CACAAGTACATGCCACGCCTTGCTCTTTAATTATGGCATTGATATACCTC
GATCGCTTAAACGTCATCGACTCGGGCTATAGCTGCAGAATCACACCACA
GCAGCTGTTTGTTGTGTCACTAATGATTTCCACAAAATTCTACGCGGGCC
ACGACGAACGGTTCTATCTGGAAGACTGGGCCAGTGACGCTTGTATGACG
GAAGATAGGCTCAAGGCAGTCGAGCTCGAATTTCTTTCCGCTATGGGTTG
GAATATATACATATCCAATGAGCTATTCTTTGATAAGTTAAGAAACGTTG
AACGTTCTTTGGCTGAACAGCAGGGACTGCGTAGAGGTTGGCTCACTTAC
AGTGAGCTCGTGCAGTTGCTGCCTAGCCTTGAATGGACGAAATTCCTCGT
TAACAGCCTGTCTGTACTATCTCTAAGCTATGCGGCAAGTATTATAACAT
TAGCCGGAGCTTTTTTTATTGCGAGCCAAGTTCCCGGTACGTTATGGCAT
CGGGATGTGGAAACTGCCTCAGATTTCACCATGACAATTAGCAGTCAGGT
ATCCGTTTCAAATGCATTAGAGTCCACACCTTTTATTAATGTCCAAGTAT
CCTCACTTTTACGTAAAACGAGTAACGTGAATGTTGAATTGATGAATCTT
GAGAAGACAAGCTGCGCCAGGGCAAGACTGAATAAAATTGAATATAAGCA
TCCGCGCCATCAATCAGTACCTACGCTTTCATTCATAAGCACCTGTCCAC
AACTTGATTTATTGTATGCCCAAGATGGAACAAGGAATTGGCTAAATATT
AAATCGCCCAACAGCGACTACAAAAACAACAGAAACCTTTCAATAACAGT
TAGATCCGTACAACTAGAAGAGCAAAAGGCTGAAAATGATTCCGTTATTT
GGCAAGCCAACACCGAAGCAATGCAGTAATTGTTTTTACCGCAAAACTTA
AAGAGGTGCTAACAACTGATATAAAATAAATATATTTATATTATATATAA
TATCAATATAATAATATTGATAACAAATTAACCAAGCGTACGAGTAATAT
AACATGCATAACAGTAAAAAAAAAAAAAAAAAAAAAAA

LD12604.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1524 CG40191-RC 1..1517 1..1517 7585 100 Plus
CG40191.e 2168 CG40191.e 279..1455 229..1405 5885 100 Plus
CG40191-RD 1704 CG40191-RD 279..1455 229..1405 5885 100 Plus
CG40191.e 2168 CG40191.e 1..212 24..235 1030 99 Plus
CG40191-RD 1704 CG40191-RD 1..212 24..235 1030 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 392020..392840 695..1515 4105 100 Plus
chr2RHet 3288813 chr2RHet 391224..391519 277..572 1480 100 Plus
chr2RHet 3288813 chr2RHet 390821..391055 1..235 1145 99.1 Plus
chr2RHet 3288813 chr2RHet 391849..391972 573..696 620 100 Plus
chr2RHet 3288813 chr2RHet 391122..391173 229..280 260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266164 695..1517 4115 100 Plus
2R 25286936 2R 1264546..1264841 277..572 1480 100 Plus
2R 25286936 2R 1264143..1264377 1..235 1145 99.1 Plus
2R 25286936 2R 1265171..1265294 573..696 620 100 Plus
2R 25286936 2R 1264444..1264495 229..280 260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 1265342..1266164 695..1517 4115 100 Plus
2R 25260384 2R 1264546..1264841 277..572 1480 100 Plus
2R 25260384 2R 1264143..1264377 1..235 1145 99.1 Plus
2R 25260384 2R 1265171..1265294 573..696 620 100 Plus
2R 25260384 2R 1264444..1264495 229..280 260 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:42:35 has no hits.

LD12604.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:37 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 390821..391048 1..228 100 -> Plus
chr2RHet 391122..391171 229..278 100 -> Plus
chr2RHet 391226..391519 279..572 100 -> Plus
chr2RHet 391849..391971 573..695 100 -> Plus
chr2RHet 392021..392840 696..1515 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:30 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 1..1137 243..1379 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:49 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 1..1137 243..1379 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:43 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 1..1137 243..1379 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:22 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 1..1137 243..1379 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:08 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 1..1137 243..1379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:03 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RC 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:48 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RC 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:43 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RC 4..1518 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:22 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RC 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:08 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RC 4..1518 1..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:37 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264143..1264370 1..228 100 -> Plus
2R 1264444..1264493 229..278 100 -> Plus
2R 1264548..1264841 279..572 100 -> Plus
2R 1265171..1265293 573..695 100 -> Plus
2R 1265343..1266162 696..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:37 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264143..1264370 1..228 100 -> Plus
2R 1264444..1264493 229..278 100 -> Plus
2R 1264548..1264841 279..572 100 -> Plus
2R 1265171..1265293 573..695 100 -> Plus
2R 1265343..1266162 696..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:37 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264143..1264370 1..228 100 -> Plus
2R 1264444..1264493 229..278 100 -> Plus
2R 1264548..1264841 279..572 100 -> Plus
2R 1265171..1265293 573..695 100 -> Plus
2R 1265343..1266162 696..1515 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:43 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 390776..391003 1..228 100 -> Plus
2RHet 391077..391126 229..278 100 -> Plus
2RHet 391181..391474 279..572 100 -> Plus
2RHet 391804..391926 573..695 100 -> Plus
2RHet 391976..392795 696..1515 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:49 Download gff for LD12604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1265171..1265293 573..695 100 -> Plus
2R 1264143..1264370 1..228 100 -> Plus
2R 1264444..1264493 229..278 100 -> Plus
2R 1264548..1264841 279..572 100 -> Plus
2R 1265343..1266162 696..1515 100   Plus

LD12604.hyp Sequence

Translation from 242 to 1378

> LD12604.hyp
MGRFKLCASPREVMKYEDFIKRIRKSLYYGVGTPDTEMSVSLPFAEYAAD
LFSETHRGHSLHRLSCVSAAQVHATPCSLIMALIYLDRLNVIDSGYSCRI
TPQQLFVVSLMISTKFYAGHDERFYLEDWASDACMTEDRLKAVELEFLSA
MGWNIYISNELFFDKLRNVERSLAEQQGLRRGWLTYSELVQLLPSLEWTK
FLVNSLSVLSLSYAASIITLAGAFFIASQVPGTLWHRDVETASDFTMTIS
SQVSVSNALESTPFINVQVSSLLRKTSNVNVELMNLEKTSCARARLNKIE
YKHPRHQSVPTLSFISTCPQLDLLYAQDGTRNWLNIKSPNSDYKNNRNLS
ITVRSVQLEEQKAENDSVIWQANTEAMQ*

LD12604.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PC 378 CG40191-PC 1..378 1..378 1941 100 Plus
CG40191-PD 378 CG40191-PD 1..378 1..378 1941 100 Plus
CG40191-PA 378 CG40191-PA 1..378 1..378 1941 100 Plus
CG40191-PB 396 CG40191-PB 1..396 1..378 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 111..378 1371 100 Plus

LD12604.pep Sequence

Translation from 242 to 1378

> LD12604.pep
MGRFKLCASPREVMKYEDFIKRIRKSLYYGVGTPDTEMSVSLPFAEYAAD
LFSETHRGHSLHRLSCVSAAQVHATPCSLIMALIYLDRLNVIDSGYSCRI
TPQQLFVVSLMISTKFYAGHDERFYLEDWASDACMTEDRLKAVELEFLSA
MGWNIYISNELFFDKLRNVERSLAEQQGLRRGWLTYSELVQLLPSLEWTK
FLVNSLSVLSLSYAASIITLAGAFFIASQVPGTLWHRDVETASDFTMTIS
SQVSVSNALESTPFINVQVSSLLRKTSNVNVELMNLEKTSCARARLNKIE
YKHPRHQSVPTLSFISTCPQLDLLYAQDGTRNWLNIKSPNSDYKNNRNLS
ITVRSVQLEEQKAENDSVIWQANTEAMQ*

LD12604.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22743-PA 446 GF22743-PA 76..431 13..378 1026 56.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10916-PA 378 GG10916-PA 1..378 1..378 1698 84.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10974-PA 406 GH10974-PA 6..389 3..377 931 52.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PC 378 CG40191-PC 1..378 1..378 1941 100 Plus
CG40191-PD 378 CG40191-PD 1..378 1..378 1941 100 Plus
CG40191-PA 378 CG40191-PA 1..378 1..378 1941 100 Plus
CG40191-PB 396 CG40191-PB 1..396 1..378 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 111..378 1371 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17487-PA 396 GI17487-PA 1..379 1..377 1001 55.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26163-PA 408 GL26163-PA 1..393 1..378 1111 56.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25313-PA 408 GA25313-PA 1..393 1..378 1111 56.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24773-PA 277 GM24773-PA 13..277 111..378 1261 89.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15142-PA 378 GD15142-PA 1..378 1..378 1893 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15088-PA 391 GJ15088-PA 2..374 12..377 979 55 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15339-PA 388 GK15339-PA 17..372 12..342 1026 55.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15212-PA 380 GE15212-PA 1..380 1..378 1666 81.6 Plus