Clone LD12611 Report

Search the DGRC for LD12611

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:126
Well:11
Vector:pBS SK-
Associated Gene/TranscriptCG33099-RA
Protein status:LD12611.pep: gold
Preliminary Size:1320
Sequenced Size:1249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5340 2001-01-01 Release 2 assignment
CG33099 2003-01-01 Sim4 clustering to Release 3
CG33099 2008-12-18 5.12 accounting

Clone Sequence Records

LD12611.complete Sequence

1249 bp assembled on 2008-08-28

GenBank Submission: BT044466.1

> LD12611.complete
TTGTCGTGTTCACATCGTCTCTTCGGAGCTCTGAGTTTCCAGATAATTTT
CAGAAGCAATCTATTTGTATTTGATTTACCTACGCGGGGCTTATTTACCA
AGAATGATAAACAGCAAGATAAGAGAGGACAAGTTGGAAACACTTGTCTC
GCGAAGTTCTGTGCCGATCATCGATCTTGCCCATTGTGGCAAGTCCCTTG
TCCATCGGGTGGGTCAGCAACTCCACAAGGCTTTCACCGAAAAGGGAATT
GCGTTTCTGGTTAACCATGGGATAGCAGAGGACAAGATCAAAGCTGTTTG
GGATCAATTTGACAACTTCTTGGATCTGCCAGCAGAGGTTCAGGATCGTT
ACAGACGAAAGGACGGTGTTAATTATGGATATGTTAGTCCCGGGATGGAG
CGATTTGATGGAAGTACTCCAGAACTGCGTCACGCCTACAATGTTTGCAA
ACTGGATGGACAGAATATTCCAAGGGAGGCACTGCCAGAATTTGCCGAAG
GCATTACCACACTGTGCACGGATTTGAAAGCCATGTCTTTGTACATAATG
AAGGCCATGGAGGTGGCCCTGGAGATTCCGCCGTCCTTCTTCATCGACAA
ACACTCCCAGATGTTGGAAGGAGATGACCTAAACATGACCACCCTCAGGA
TGCTCTACTATCCGGCGATTGTGGATGATGAGCCGGGCCAGAGCGAGGGT
GCCATCCGTTGTGGTGCCCATGTGGACTACGGCACCTTCACGCTGCTCGC
CCAGGATTCCGAAGGTGGCTTGGAGGTGCAATTGCCGGGCAGCGAAAAAT
GGGAACGGGTGGGTCATTTACCTGGTGCCATACTTATAAACGGCGGGGAA
CTTCTGTCCATCTGGACGAAGCAGCGTTACCACGCCCTGCCTCATCGCGT
CGTCATACCTGAACAAGAACTTATAAGAACCCGTGGCAGACACTCCATAG
CATATTTCTGCCATCCCAATAACTCGATCTTGATATCTCCCAACGATCTG
TTGAGTGAAGGGGAGGCAAAGAGTGAGGACAAAGTATACAGCGCCTATGA
ACTGATACAGAAAAAGTTTAATGACACCTACGGTCAGCGATCTCAATAAG
TCAACGAATCTGGGGCAAAAGTTTATTACAGCTCTAGCCATATGAAAATC
ATTAGCATTCTTAACCCAATAATGTAACTTCAGCAGCAATAATGAAATGT
AATTGTTTGAATTTAATAAATTATAGCATTTAAAAAAAAAAAAAAAAAA

LD12611.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33099-RA 1305 CG33099-RA 30..1261 1..1232 6160 100 Plus
CG5346-RA 2004 CG5346-RA 1288..1379 722..813 205 81.5 Plus
CG5346.a 2357 CG5346.a 1288..1379 722..813 205 81.5 Plus
CG5346-RA 2004 CG5346-RA 1048..1112 632..696 145 81.5 Plus
CG5346.a 2357 CG5346.a 1048..1112 632..696 145 81.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18352933..18353537 889..285 2965 99.3 Minus
chr3R 27901430 chr3R 18352468..18352666 1231..1033 980 99.5 Minus
chr3R 27901430 chr3R 18353910..18354103 194..1 955 99.5 Minus
chr3R 27901430 chr3R 18352728..18352871 1032..889 720 100 Minus
chr3R 27901430 chr3R 18353587..18353685 286..188 495 100 Minus
chr3R 27901430 chr3R 18344670..18344761 813..722 205 81.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22529385..22529989 889..285 3025 100 Minus
3R 32079331 3R 22528919..22529118 1232..1033 1000 100 Minus
3R 32079331 3R 22530362..22530555 194..1 955 99.5 Minus
3R 32079331 3R 22529180..22529323 1032..889 720 100 Minus
3R 32079331 3R 22530039..22530137 286..188 495 100 Minus
3R 32079331 3R 22521111..22521202 813..722 205 81.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22270216..22270820 889..285 3025 100 Minus
3R 31820162 3R 22269750..22269949 1232..1033 1000 100 Minus
3R 31820162 3R 22271193..22271386 194..1 955 99.4 Minus
3R 31820162 3R 22270011..22270154 1032..889 720 100 Minus
3R 31820162 3R 22270870..22270968 286..188 495 100 Minus
3R 31820162 3R 22261942..22262033 813..722 205 81.5 Minus
3R 31820162 3R 22272331..22272414 454..371 165 79.7 Minus
3R 31820162 3R 22262209..22262273 696..632 145 81.5 Minus
Blast to na_te.dros performed on 2019-03-16 06:54:24 has no hits.

LD12611.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:55:08 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18352728..18352870 890..1032 100 <- Minus
chr3R 18352468..18352666 1033..1231 99 <- Minus
chr3R 18352933..18353535 287..889 99 <- Minus
chr3R 18353587..18353684 189..286 100 <- Minus
chr3R 18353916..18354103 1..188 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:32 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..996 104..1099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:12:44 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..996 104..1099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:34:12 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..996 104..1099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:22:38 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..996 104..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:29 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..1231 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:12:44 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..1231 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:12 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 18..1248 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-28 18:08:28 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 1..1231 1..1231 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:22:38 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
CG33099-RA 18..1248 1..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:08 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22528920..22529118 1033..1231 100 <- Minus
3R 22529180..22529322 890..1032 100 <- Minus
3R 22529385..22529987 287..889 100 <- Minus
3R 22530039..22530136 189..286 100 <- Minus
3R 22530368..22530555 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:08 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22528920..22529118 1033..1231 100 <- Minus
3R 22529180..22529322 890..1032 100 <- Minus
3R 22529385..22529987 287..889 100 <- Minus
3R 22530039..22530136 189..286 100 <- Minus
3R 22530368..22530555 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:08 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22528920..22529118 1033..1231 100 <- Minus
3R 22529180..22529322 890..1032 100 <- Minus
3R 22529385..22529987 287..889 100 <- Minus
3R 22530039..22530136 189..286 100 <- Minus
3R 22530368..22530555 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:12 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18354642..18354840 1033..1231 100 <- Minus
arm_3R 18354902..18355044 890..1032 100 <- Minus
arm_3R 18355107..18355709 287..889 100 <- Minus
arm_3R 18355761..18355858 189..286 100 <- Minus
arm_3R 18356090..18356277 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:43:16 Download gff for LD12611.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22270216..22270818 287..889 100 <- Minus
3R 22270870..22270967 189..286 100 <- Minus
3R 22271199..22271386 1..188 100   Minus
3R 22269751..22269949 1033..1231 100 <- Minus
3R 22270011..22270153 890..1032 100 <- Minus

LD12611.pep Sequence

Translation from 103 to 1098

> LD12611.pep
MINSKIREDKLETLVSRSSVPIIDLAHCGKSLVHRVGQQLHKAFTEKGIA
FLVNHGIAEDKIKAVWDQFDNFLDLPAEVQDRYRRKDGVNYGYVSPGMER
FDGSTPELRHAYNVCKLDGQNIPREALPEFAEGITTLCTDLKAMSLYIMK
AMEVALEIPPSFFIDKHSQMLEGDDLNMTTLRMLYYPAIVDDEPGQSEGA
IRCGAHVDYGTFTLLAQDSEGGLEVQLPGSEKWERVGHLPGAILINGGEL
LSIWTKQRYHALPHRVVIPEQELIRTRGRHSIAYFCHPNNSILISPNDLL
SEGEAKSEDKVYSAYELIQKKFNDTYGQRSQ*

LD12611.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16150-PA 330 GF16150-PA 1..330 1..330 1491 80.6 Plus
Dana\GF16151-PA 404 GF16151-PA 1..403 1..331 1079 51.6 Plus
Dana\GF16149-PA 319 GF16149-PA 1..305 11..317 897 51.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12508-PA 331 GG12508-PA 1..331 1..331 1714 95.5 Plus
Dere\GG12509-PA 403 GG12509-PA 1..397 1..326 1055 51.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17399-PA 408 GH17399-PA 1..401 1..326 1104 53.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33099-PA 331 CG33099-PA 1..331 1..331 1740 100 Plus
CG5346-PA 403 CG5346-PA 1..401 1..330 1027 51.1 Plus
CG33093-PA 322 CG33093-PA 2..308 8..317 908 55.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22727-PA 405 GI22727-PA 1..399 1..326 1126 54.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13684-PA 342 GL13684-PA 1..337 1..331 1340 73.3 Plus
Dper\GL13685-PA 403 GL13685-PA 1..402 1..331 1057 50.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26989-PA 344 GA26989-PA 1..339 1..331 1345 73.7 Plus
Dpse\GA18819-PA 403 GA18819-PA 1..402 1..331 1057 50.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23643-PA 403 GM23643-PA 1..402 1..331 1051 50.7 Plus
Dsec\GM23640-PA 322 GM23640-PA 2..308 8..317 947 56.9 Plus
Dsec\GM23642-PA 180 GM23642-PA 1..180 152..331 931 96.1 Plus
Dsec\GM23641-PA 118 GM23641-PA 1..111 1..111 578 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18451-PA 331 GD18451-PA 1..331 1..331 1748 97.6 Plus
Dsim\GD18452-PA 403 GD18452-PA 1..402 1..331 1051 50.7 Plus
Dsim\GD18450-PA 284 GD18450-PA 2..273 8..299 828 53.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24665-PA 408 GJ24665-PA 1..401 1..326 1140 55.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14436-PA 332 GK14436-PA 8..332 8..329 1183 64.5 Plus
Dwil\GK14437-PA 404 GK14437-PA 1..402 1..331 1049 51.5 Plus
Dwil\GK14435-PA 315 GK14435-PA 3..298 12..302 849 53.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24030-PA 331 GE24030-PA 1..331 1..331 1740 97 Plus
Dyak\GE24031-PA 403 GE24031-PA 1..402 1..331 1055 51 Plus
Dyak\GE24029-PA 321 GE24029-PA 2..307 8..317 893 54 Plus

LD12611.hyp Sequence

Translation from 103 to 1098

> LD12611.hyp
MINSKIREDKLETLVSRSSVPIIDLAHCGKSLVHRVGQQLHKAFTEKGIA
FLVNHGIAEDKIKAVWDQFDNFLDLPAEVQDRYRRKDGVNYGYVSPGMER
FDGSTPELRHAYNVCKLDGQNIPREALPEFAEGITTLCTDLKAMSLYIMK
AMEVALEIPPSFFIDKHSQMLEGDDLNMTTLRMLYYPAIVDDEPGQSEGA
IRCGAHVDYGTFTLLAQDSEGGLEVQLPGSEKWERVGHLPGAILINGGEL
LSIWTKQRYHALPHRVVIPEQELIRTRGRHSIAYFCHPNNSILISPNDLL
SEGEAKSEDKVYSAYELIQKKFNDTYGQRSQ*

LD12611.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33099-PA 331 CG33099-PA 1..331 1..331 1740 100 Plus
CG5346-PA 403 CG5346-PA 1..401 1..330 1027 51.1 Plus
CG33093-PA 322 CG33093-PA 2..308 8..317 908 55.9 Plus