Clone LD12639 Report

Search the DGRC for LD12639

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:126
Well:39
Vector:pBS SK-
Associated Gene/TranscriptCG7492-RA
Protein status:LD12639.pep: gold
Preliminary Size:2423
Sequenced Size:2685

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7492 2001-01-01 Release 2 assignment
CG7492 2003-01-01 Sim4 clustering to Release 3
CG7492 2003-02-27 Blastp of sequenced clone
CG7492 2008-04-29 Release 5.5 accounting
CG7492 2008-08-15 Release 5.9 accounting
CG7492 2008-12-18 5.12 accounting

Clone Sequence Records

LD12639.complete Sequence

2685 bp (2685 high quality bases) assembled on 2003-02-27

GenBank Submission: BT004900

> LD12639.complete
TCACACTGAATCGGGCAACATCACGGTGAAAAAAGGAAAGAATTGGGGAA
AATGTGGTTTTCGGTCAAGTGATAGCAGCAACGCAGATGAGCTGGGCCGA
GGAAAAACGGATAACCGAACCGTGAAAATCGTCAACTGGCCAAAAAACTC
CTTGGCTGGGCCCTATGCAATTTCTGCCATCAAAAACTTGTCGACGTTCG
GCTGTTTTTGTTGTTGTTGTTGCTGCTGCTGCTACTACTGCTACTGCTTG
CTGATGGCTGCATTTTCGTATTGGCATCGGATTTTTCTTGGGTACCATTC
GACGTACATATAATCCGTGGATGAAAATCCAGAACCGATTGCTGATGAGA
GTCTGATGAAAGAAACGCAGTAGATACAGCAATCTATCGGATATTTCTAA
TTATACAACGCAGCCCGTAGCAAAAACGTATTTTCACCCGAAGATCCGAA
ACTGGTTATACACACATCGCAAGGAACACGGGAGGTTGGGAGGGCTGCCC
CATGGACAAAATCAAGTTAAAGGTTATTGGCGTGCTGCGCGAACGCGATG
GTGGAAATCGTAGTGGTTCTGGAGGATTGGGGGCAAGTGCTGGAGCAGGA
GCTGGATCTGGCGGAGTTACGGCAACAGCAGGCCATCAGTTGGCCTCCGC
AGGAGGAGCGGGCGTGGCGCAGCCCTCGATTGGGGTCACACAGGATAATA
ACAACGAAGGCAACGCCCCGGGAGGTGGAGGAGCAGTAATCGAACCCCAG
GCAACGGGAGGAGCCGCCGGACCATCTGGTGGAGTTGGTGGCGCCGCTAG
AACATCGGTGCTATCCAGACCGCAGACCTCCAAGATTAGCGCTCTAGACC
TGGCCGGTATACTCAACACGCGGAGAAGACTCGAGTGGACCAAGGAGTGG
CTGCGCAAAAACCAGACCGAGTTTCTCAGCAAGGAGAATTTACTTAGTGA
ACTGCAGTCGCGCAAGGATGAGTGCTATCACTTGAATTACTTTCTAGCCA
TAACAGAGAGCCAGTTTCGGTATCTAGTGCAAAAGCTGGAGCCCATCATT
AGCCAGTATGCTCCGCAACGCAAGAAGAAGTCCTTCAGCGCCGAGGAACG
ACTGGCCATAACGCTCAAGTATTTGGCAACGGGTGAAGTACATTCTTGTC
GAAACTACTGCTTCCGTGCCTCGAAATTTGTGATAAACGAAATGATTGCC
AATATCTGTCTGGGCTTCTACGAGCACCTCAAGGACCAATACGTGACACT
ACCAAAGACTGACGATCAGTGGCGCAGCGCCGCCGAGGAGATGGAGCGTA
AGCACAACCTGCCCCACTGTGTGGGCAATCTGTTCATGCGCAGCATCCAA
CTCCAAGGCTCTGGGACCGCTTCGAGTTCCGGAGCGGCGAGCAGCGCATC
CGCCGTTGGCGACGATCGCAAGCGCGCGACCGTCATCTTCACGGGCATTG
TGGATGCCGACAACAATTTCCAGTACGCAAGGGTGGAAAGGGCGGCGAGC
AGCCGACCCAATGACATCTATAACCAGACCAGTGCCATCGAGCTGATTAG
GCACAAGATGCACGCTCTGGAGGAACAACAGTCGGCGGAGATGGACCGAC
AGGGCTATTACTTTGCTGGCGATTCGGTACTGCCTGCCACCTCGTATCTG
GTGACCACACGCAACCTGCCCAAGGATCTGGCCGTACTGGAGGCCCTGGA
GCAGGTCAATGCCCATGCGGATCAAACGATGCGGATACTGTGTAACATGT
TCCCCATTCTGGCGCAGCCGCTGCGCATCAGTGACAAGCACATCCGCGAA
GTGGTGCTCGGCTGTGTGGCGCTGTACAATTTCCTGCGCAAGACGGACGA
CTCATTTCGGCGCACCAGCGACAGCATCGTGCAGCAAAGGGCAGAGCAGC
AGCAGCTGGCCTACAGTGTCGATAGCGATGAAATTGACGACGATTGCATC
ATGCTGGCCACCGAGGAGGAGTTACGCGAACGGGCGGAGTTCACGCCCAG
CGTTGGACTGACCACCTGCTTCCAGCCGCTGTGTACGCAGCGTGGCGAGA
CGCCCGAAGGTCTGGCTAAGAGGAACTGGCTGCTCCAGCTGGACTTTGCC
CAACAGAGCGGAAACGGAAGCGGTATTGGCATAGGAATTGGCAATGGTAA
TATGAGCGGAAATGGCAGCATTGTCGGCAGTACAGACAGTGCGAGCGGCA
GTTCAAATGGGAGTTTATATTAGTGCAATTTACCTAAGTACTTTACGAAT
TTTGTATAGTTCCTTGTTTTATATTTTCTAAATCTGTAATCTGTAACAGC
ATCTGTTGCCACGTTGCCGACTTTTGTTTACCTCTCTCGTTTGGCGCATT
ATCTACTGCATACCATTACGACTACGACTATGTTCACGTTCGTTCCATCT
GCGTTCCGTGCTTCATCTAGGGTTCTGTATAGTTAGCTTAGTTTCTTGCG
GAAGTTCCGGTTCGGTGAATGATGCTATGTGATGTCTCAAATCTCTATTG
TGGCCCAGTGCACTGCTCCTGGGGAGCGGCCTGCTTATTAAACGGGTCTG
GCAACAAACAAAAAAGTAAAAAAAAAAAAAAGCGGCAGCTGACAAAAATG
TGCGAAGTCGAAGAAGTACATCGGAAACAGATCAACAAAATTAAAATTTT
AGTATTCGTATTTAAGCAAAAAAAAAAAAAAAAAA

LD12639.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7492-RA 2717 CG7492-RA 51..2717 1..2667 13335 100 Plus
PGRP-SD-RA 696 PGRP-SD-RA 644..696 2685..2633 250 98.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7643995..7645536 2667..1132 7425 99 Minus
chr3L 24539361 chr3L 7645594..7646235 1134..493 3180 99.7 Minus
chr3L 24539361 chr3L 7646387..7646880 494..1 2455 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7651848..7653401 2685..1132 7755 99.9 Minus
3L 28110227 3L 7653459..7654100 1134..493 3210 100 Minus
3L 28110227 3L 7654252..7654745 494..1 2470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7644948..7646501 2685..1132 7755 99.9 Minus
3L 28103327 3L 7646559..7647200 1134..493 3210 100 Minus
3L 28103327 3L 7647352..7647845 494..1 2470 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:06:09 has no hits.

LD12639.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:10 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7643995..7645535 1133..2667 99 <- Minus
chr3L 7645596..7646234 494..1132 99 <- Minus
chr3L 7646388..7646619 262..493 99 == Minus
chr3L 7646693..7646880 1..188 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:38 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..1722 502..2223 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:34 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..1722 502..2223 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:04 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..1722 502..2223 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:56 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..1722 502..2223 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:59:48 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..1722 502..2223 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:31 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..2667 1..2667 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:34 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..2667 1..2667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:04 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 8..2674 1..2667 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:57 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 1..2667 1..2667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:59:48 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
CG7492-RA 8..2674 1..2667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:10 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7651866..7653400 1133..2667 100 <- Minus
3L 7653461..7654099 494..1132 100 <- Minus
3L 7654253..7654745 1..493 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:10 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7651866..7653400 1133..2667 100 <- Minus
3L 7653461..7654099 494..1132 100 <- Minus
3L 7654253..7654745 1..493 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:10 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7651866..7653400 1133..2667 100 <- Minus
3L 7653461..7654099 494..1132 100 <- Minus
3L 7654253..7654745 1..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:04 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7644966..7646500 1133..2667 100 <- Minus
arm_3L 7646561..7647199 494..1132 100 <- Minus
arm_3L 7647353..7647845 1..493 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:16 Download gff for LD12639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7644966..7646500 1133..2667 100 <- Minus
3L 7646561..7647199 494..1132 100 <- Minus
3L 7647353..7647845 1..493 100   Minus

LD12639.pep Sequence

Translation from 501 to 2222

> LD12639.pep
MDKIKLKVIGVLRERDGGNRSGSGGLGASAGAGAGSGGVTATAGHQLASA
GGAGVAQPSIGVTQDNNNEGNAPGGGGAVIEPQATGGAAGPSGGVGGAAR
TSVLSRPQTSKISALDLAGILNTRRRLEWTKEWLRKNQTEFLSKENLLSE
LQSRKDECYHLNYFLAITESQFRYLVQKLEPIISQYAPQRKKKSFSAEER
LAITLKYLATGEVHSCRNYCFRASKFVINEMIANICLGFYEHLKDQYVTL
PKTDDQWRSAAEEMERKHNLPHCVGNLFMRSIQLQGSGTASSSGAASSAS
AVGDDRKRATVIFTGIVDADNNFQYARVERAASSRPNDIYNQTSAIELIR
HKMHALEEQQSAEMDRQGYYFAGDSVLPATSYLVTTRNLPKDLAVLEALE
QVNAHADQTMRILCNMFPILAQPLRISDKHIREVVLGCVALYNFLRKTDD
SFRRTSDSIVQQRAEQQQLAYSVDSDEIDDDCIMLATEEELRERAEFTPS
VGLTTCFQPLCTQRGETPEGLAKRNWLLQLDFAQQSGNGSGIGIGIGNGN
MSGNGSIVGSTDSASGSSNGSLY*

LD12639.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23772-PA 556 GF23772-PA 1..556 1..573 2357 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14945-PA 585 GG14945-PA 11..585 1..573 2511 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16858-PA 566 GH16858-PA 1..539 1..530 1952 70.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7492-PA 573 CG7492-PA 1..573 1..573 2937 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13081-PA 526 GI13081-PA 1..523 1..543 1982 72.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24110-PA 599 GL24110-PA 40..599 1..573 2123 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20390-PA 560 GA20390-PA 1..560 1..573 2180 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13740-PA 572 GM13740-PA 1..572 1..573 2984 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13041-PA 572 GD13041-PA 1..572 1..573 2984 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13830-PA 572 GJ13830-PA 51..571 1..557 2032 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24247-PA 588 GK24247-PA 142..587 98..557 2002 81.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20397-PA 573 GE20397-PA 1..573 1..573 2547 95.6 Plus

LD12639.hyp Sequence

Translation from 501 to 2222

> LD12639.hyp
MDKIKLKVIGVLRERDGGNRSGSGGLGASAGAGAGSGGVTATAGHQLASA
GGAGVAQPSIGVTQDNNNEGNAPGGGGAVIEPQATGGAAGPSGGVGGAAR
TSVLSRPQTSKISALDLAGILNTRRRLEWTKEWLRKNQTEFLSKENLLSE
LQSRKDECYHLNYFLAITESQFRYLVQKLEPIISQYAPQRKKKSFSAEER
LAITLKYLATGEVHSCRNYCFRASKFVINEMIANICLGFYEHLKDQYVTL
PKTDDQWRSAAEEMERKHNLPHCVGNLFMRSIQLQGSGTASSSGAASSAS
AVGDDRKRATVIFTGIVDADNNFQYARVERAASSRPNDIYNQTSAIELIR
HKMHALEEQQSAEMDRQGYYFAGDSVLPATSYLVTTRNLPKDLAVLEALE
QVNAHADQTMRILCNMFPILAQPLRISDKHIREVVLGCVALYNFLRKTDD
SFRRTSDSIVQQRAEQQQLAYSVDSDEIDDDCIMLATEEELRERAEFTPS
VGLTTCFQPLCTQRGETPEGLAKRNWLLQLDFAQQSGNGSGIGIGIGNGN
MSGNGSIVGSTDSASGSSNGSLY*

LD12639.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7492-PA 573 CG7492-PA 1..573 1..573 2937 100 Plus