Clone LD12777 Report

Search the DGRC for LD12777

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:127
Well:77
Vector:pBS SK-
Associated Gene/TranscriptCG2614-RA
Protein status:LD12777.pep: gold
Preliminary Size:2260
Sequenced Size:2235

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2614 2001-10-10 Blastp of sequenced clone
CG2614 2003-01-01 Sim4 clustering to Release 3
CG2614 2008-04-29 Release 5.5 accounting
CG2614 2008-08-15 Release 5.9 accounting
CG2614 2008-12-18 5.12 accounting

Clone Sequence Records

LD12777.complete Sequence

2235 bp (2235 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061160

> LD12777.complete
ACATTTTGCCGCTTTATTGTTTATATTTTGCATCCTTTTTGTAGTTGTTG
AAACCATGAATTTACTGCCCAAAACCCGCGAGGAGTTCGCACAGACCGAT
TACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCCTTCGAATGGTA
CGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATACATCAAGCCGG
CGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAATTGAGCATGGAT
ATGTACGACACAGGATTTCGGGATATCACAAACATAGATATATCTCCCAT
CGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCGGCCGGAAATGA
AGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGGATGAAAGCTTT
TCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTTGCCGACGACGA
ACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGAAATACTAAGAA
CCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGCTGCAAGAGCAC
ATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAATTGCATGCTGAG
GATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGAGAAGAATGCCG
ATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTACTAAATTTAAG
AGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAACGACAAGATGCA
AAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTCATCAGTCCAAA
AGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCAACATAGCTGGTCAC
AATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAAACCCCTCGCTA
TACTATCCACATACTGGATAAGCCGCCAGCTCGCGGCCTGGGCAAATACG
CGGCGTTTATCGTTCCTCAGGGAAGAGAGGTGGAGTGGATTTTTTCCACG
CCTGCGGGCCGGAAAAAGCTCCAGGACTCCGCCAACTTCCAACGACTGGC
TGTGGTTACCCTTCATAGAGATCAGGTTTACAGTACCTTAGACGAAGTGA
AGCAAGAGTTGGCCGACAGCATAAAGAACCTATCGCCAGCTGGACTCACT
GATCAGATACCGTATCTAAGTCTTGGATCCGATGTGGGCAAAAGGGAGAC
TCTTATTTGTGGGTTCTCTAAGATATCTGGAGATTTCCGCATCGAGGAAG
TGGAGGCCAATGGCAAGACCCTGCGACGCCTTATTTTTCTCAGCAATCAG
TTTGTTGTGCAATCGGAAGCCTTAGTTAAAACAGTCAAAATCAAAGGCAA
AAAGGATCGAAAGAAGATTGACTTCGGCTACCTAGCCTGCCAGCATCATT
TGTACATGTCCGTGGGTGTCCAACTGGCCACAACGGTGCAGCATCCCAAA
AGAGATGTGGAAAAGGATGTTCTCGTCGTCGGCTTGGGAGGCGGCGGTCT
GTGCAGCTTTCTTCACGCCGCTTTGCCGCAAGCTAGAATAACGGCCGTCG
AAATTGATCCTATAATGTTGGAGGTGGCTGAGCAGTATTTTGAGCTCAAG
CAGGACAAACGCTTTCATGTGGTTATCGATGATGGCTTGGATTTCGTTGA
GCGATGTCGCAATGAAGATATCCACTTCGATGCCGTGTTGTTCGATGTAG
ACAGCAAGGATCTCAGTTTGGGAATGAGTTGTCCGCCCCAAAGCTTCCTA
GCTACGAAGATCCTGCAGCACATAAAGGAGATTATCGGTCCGAAAGGTCT
CTTTATGCTAAATCTCGTGTGTCGCGATGAGAGCCTTCGCACAGAGGCTC
TCAACAATCTGCACAAAGTCTTTCCTGCTGTGTGCAGCTACAAACTAGAG
GAAGACATCAACGAGATAATATATTGTGCCAACGATGAAAAGTACAAAAC
TGTCGAGCAGTGGAAGAAAAACATGGGAACCGCTGGTCGAGGATTAAACA
GTGCCGTCAAGGAGACAAAGCTGGCTAGTGAAGACGCCCTTGAGGTGGCA
GAGTTCCTCAGCGAGTTGAAAATATAATCTTTAACGTAGAACAATTAGCA
AAGACAATTTACGTTTTGTAAATAAATGTTAATTGTATTTAGTTATAAAT
AAAGACTAAACTATTAACTAATTGTATGTAGAAATTGCTAAGAATAACAA
ACTAAATGTGTGGCAACAAAAAAAAAAAAAAAAAA

LD12777.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-RA 2378 CG2614-RA 110..2328 1..2219 11095 100 Plus
CG2614.a 2234 CG2614.a 28..1367 1..1340 6685 99.9 Plus
CG2614.a 2234 CG2614.a 1360..2234 1345..2219 4375 100 Plus
CG31678.a 4198 CG31678.a 4052..4198 454..308 735 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20655983..20656601 716..1334 3065 99.7 Plus
chr2L 23010047 chr2L 20657113..20657664 1666..2217 2730 99.6 Plus
chr2L 23010047 chr2L 20655418..20655656 270..508 1180 99.6 Plus
chr2L 23010047 chr2L 20655708..20655923 502..717 1065 99.5 Plus
chr2L 23010047 chr2L 20656656..20656851 1333..1528 980 100 Plus
chr2L 23010047 chr2L 20654901..20655052 1..152 760 100 Plus
chr2L 23010047 chr2L 20656908..20657047 1528..1667 700 100 Plus
chr2L 23010047 chr2L 20655153..20655277 147..271 625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20657537..20658155 716..1334 3095 100 Plus
2L 23513712 2L 20658667..20659220 1666..2219 2770 100 Plus
2L 23513712 2L 20656972..20657210 270..508 1195 100 Plus
2L 23513712 2L 20657262..20657477 502..717 1065 99.5 Plus
2L 23513712 2L 20658210..20658405 1333..1528 980 100 Plus
2L 23513712 2L 20656455..20656606 1..152 760 100 Plus
2L 23513712 2L 20658462..20658601 1528..1667 700 100 Plus
2L 23513712 2L 20656707..20656831 147..271 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20657537..20658155 716..1334 3095 100 Plus
2L 23513712 2L 20658667..20659220 1666..2219 2770 100 Plus
2L 23513712 2L 20656972..20657210 270..508 1195 100 Plus
2L 23513712 2L 20657262..20657477 502..717 1065 99.5 Plus
2L 23513712 2L 20658210..20658405 1333..1528 980 100 Plus
2L 23513712 2L 20656455..20656606 1..152 760 100 Plus
2L 23513712 2L 20658462..20658601 1528..1667 700 100 Plus
2L 23513712 2L 20656707..20656831 147..271 625 100 Plus
Blast to na_te.dros performed 2019-03-15 18:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1113..1253 2206..2063 145 58.6 Minus
S2 1735 S2 S2 1735bp 100..167 2106..2170 116 67.6 Plus

LD12777.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:04 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20655419..20655655 271..507 99 -> Plus
chr2L 20655714..20655921 508..715 100 -> Plus
chr2L 20654901..20655047 1..147 100 -> Plus
chr2L 20655154..20655276 148..270 100 -> Plus
chr2L 20655983..20656601 716..1334 99 -> Plus
chr2L 20656658..20656850 1335..1527 100 -> Plus
chr2L 20656908..20657047 1528..1667 100 -> Plus
chr2L 20657115..20657664 1668..2217 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:45 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1..2022 56..2077 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:17 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1..2022 56..2077 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:03 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1..2022 56..2077 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:20 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1..2022 56..2077 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:19 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1..2022 56..2077 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:53 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 28..2244 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:17 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 28..2244 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:03 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 30..2246 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:20 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 28..2244 1..2217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:19 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 30..2246 1..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:04 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20656455..20656601 1..147 100 -> Plus
2L 20656708..20656830 148..270 100 -> Plus
2L 20656973..20657209 271..507 100 -> Plus
2L 20657268..20657475 508..715 100 -> Plus
2L 20657537..20658155 716..1334 100 -> Plus
2L 20658212..20658404 1335..1527 100 -> Plus
2L 20658462..20658601 1528..1667 100 -> Plus
2L 20658669..20659218 1668..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:04 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20656455..20656601 1..147 100 -> Plus
2L 20656708..20656830 148..270 100 -> Plus
2L 20656973..20657209 271..507 100 -> Plus
2L 20657268..20657475 508..715 100 -> Plus
2L 20657537..20658155 716..1334 100 -> Plus
2L 20658212..20658404 1335..1527 100 -> Plus
2L 20658462..20658601 1528..1667 100 -> Plus
2L 20658669..20659218 1668..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:04 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20656455..20656601 1..147 100 -> Plus
2L 20656708..20656830 148..270 100 -> Plus
2L 20656973..20657209 271..507 100 -> Plus
2L 20657268..20657475 508..715 100 -> Plus
2L 20657537..20658155 716..1334 100 -> Plus
2L 20658212..20658404 1335..1527 100 -> Plus
2L 20658462..20658601 1528..1667 100 -> Plus
2L 20658669..20659218 1668..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:03 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20656708..20656830 148..270 100 -> Plus
arm_2L 20656973..20657209 271..507 100 -> Plus
arm_2L 20657268..20657475 508..715 100 -> Plus
arm_2L 20656455..20656601 1..147 100 -> Plus
arm_2L 20657537..20658155 716..1334 100 -> Plus
arm_2L 20658212..20658404 1335..1527 100 -> Plus
arm_2L 20658462..20658601 1528..1667 100 -> Plus
arm_2L 20658669..20659218 1668..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:22 Download gff for LD12777.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20657268..20657475 508..715 100 -> Plus
2L 20656973..20657209 271..507 100 -> Plus
2L 20657537..20658155 716..1334 100 -> Plus
2L 20658212..20658404 1335..1527 100 -> Plus
2L 20658462..20658601 1528..1667 100 -> Plus
2L 20658669..20659218 1668..2217 100   Plus
2L 20656455..20656601 1..147 100 -> Plus
2L 20656708..20656830 148..270 100 -> Plus

LD12777.hyp Sequence

Translation from 0 to 2076

> LD12777.hyp
HFAALLFIFCILFVVVETMNLLPKTREEFAQTDYWNEFFKKRGEKAFEWY
GEYLELCDQIHKYIKPADRILMLGCGNSKLSMDMYDTGFRDITNIDISPI
AVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSVSLDKGTLDALFADDE
PETRAVVENYFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPKHNCMLR
IVHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGNDKMQ
RFTTVSELNSAVSSVQKAALVCNGLARSNIAGHNEVIMDLHRPSEQTPRY
TIHILDKPPARGLGKYAAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLA
VVTLHRDQVYSTLDEVKQELADSIKNLSPAGLTDQIPYLSLGSDVGKRET
LICGFSKISGDFRIEEVEANGKTLRRLIFLSNQFVVQSEALVKTVKIKGK
KDRKKIDFGYLACQHHLYMSVGVQLATTVQHPKRDVEKDVLVVGLGGGGL
CSFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLDFVE
RCRNEDIHFDAVLFDVDSKDLSLGMSCPPQSFLATKILQHIKEIIGPKGL
FMLNLVCRDESLRTEALNNLHKVFPAVCSYKLEEDINEIIYCANDEKYKT
VEQWKKNMGTAGRGLNSAVKETKLASEDALEVAEFLSELKI*

LD12777.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-PA 673 CG2614-PA 1..673 19..691 3475 100 Plus
CG2614-PC 669 CG2614-PC 1..669 19..691 3442 99.4 Plus

LD12777.pep Sequence

Translation from 55 to 2076

> LD12777.pep
MNLLPKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPAD
RILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKF
LQMDATAMTFPDESFSVSLDKGTLDALFADDEPETRAVVENYFKEILRTM
RNGGRYVGISLLQEHILNFLLDFLPKHNCMLRIVHCLGVEQANKEKNADD
ALTLPVFVVVATKFKSLPMPVLEFGFGNDKMQRFTTVSELNSAVSSVQKA
ALVCNGLARSNIAGHNEVIMDLHRPSEQTPRYTIHILDKPPARGLGKYAA
FIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVTLHRDQVYSTLDEVKQ
ELADSIKNLSPAGLTDQIPYLSLGSDVGKRETLICGFSKISGDFRIEEVE
ANGKTLRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHHLY
MSVGVQLATTVQHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITAVEI
DPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNEDIHFDAVLFDVDS
KDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALN
NLHKVFPAVCSYKLEEDINEIIYCANDEKYKTVEQWKKNMGTAGRGLNSA
VKETKLASEDALEVAEFLSELKI*

LD12777.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15348-PA 673 GF15348-PA 1..673 1..673 3193 90.6 Plus
Dana\GF20160-PA 131 GF20160-PA 17..131 505..619 474 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21245-PA 673 GG21245-PA 1..673 1..673 3525 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10876-PA 671 GH10876-PA 1..671 1..673 2872 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-PA 673 CG2614-PA 1..673 1..673 3475 100 Plus
CG2614-PC 669 CG2614-PC 1..669 1..673 3442 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18249-PA 673 GI18249-PA 1..673 1..673 2905 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18513-PA 673 GL18513-PA 1..673 1..673 3056 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15401-PA 673 GA15401-PA 1..673 1..673 3049 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23362-PA 657 GM23362-PA 1..647 1..647 3430 98.1 Plus
Dsec\GM22671-PA 136 GM22671-PA 1..132 87..221 571 83 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24273-PA 673 GD24273-PA 1..673 1..673 3561 98.2 Plus
Dsim\GD17658-PA 141 GD17658-PA 1..137 82..221 597 83.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22983-PA 673 GJ22983-PA 1..673 1..673 2924 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15051-PA 673 GK15051-PA 1..673 1..673 3159 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13319-PA 673 GE13319-PA 1..673 1..673 3515 96.4 Plus