BDGP Sequence Production Resources |
Search the DGRC for LD12912
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 129 |
Well: | 12 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sh3beta-RA |
Protein status: | LD12912.pep: gold |
Preliminary Size: | 1520 |
Sequenced Size: | 1489 |
Gene | Date | Evidence |
---|---|---|
CG8582 | 2001-01-01 | Release 2 assignment |
CG8582 | 2001-10-10 | Blastp of sequenced clone |
CG8582 | 2003-01-01 | Sim4 clustering to Release 3 |
Sh3beta | 2008-04-29 | Release 5.5 accounting |
Sh3beta | 2008-08-15 | Release 5.9 accounting |
Sh3beta | 2008-12-18 | 5.12 accounting |
1489 bp (1489 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061162
> LD12912.complete ATTTTCCACTCCTGATATCAAATATTTTTGCACTTTTATAAGCGTCGCCA GGCAATTTTTTTATCCGCGTCTTTGCCGTTTTTACAGCCAATAAAACCAA CGACCTTGCCCAGTGCGTGTGCCTTCGTCACCAGTGGAAAAACATTACGT AGGGGCGCAGGACGGAAGAAAGCAGGAAAAGAAAAGATCTATAAATATTT TTAATCGCCGTGAAAGTAGCCAGCAGATTTTAGTTGCAAAATATTATTTC ATTTGCGGTGCGAGGACACAGTAATCTGCGAAAATGGTCTTGAAAGTCTA CGTCAGCGGCATGTCCGGCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCG TTCTGATGATCCTGGACAGCAAGAACATCAAGTACGACACGGTGGACATC ACGGAGCCCGGCAAGGAATCCGAGAAGGAGCTGATGCAAAACAAATCGAC AAGCAACGGTGGAACGGTCAGCGATCCAGAGCCCCGTCATCCGCTTCCTC CGCAGCTGTTCAACGACGACGAGTACTGCGGTGATTACGACGCCTTTGAC ATGGCCAACGAGATCGATACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGC CGACACCACGGCAGTTAGTACCGCCCAAATCGAACTGAAGCAGGAGAACG GCGATGCCAAGAAGGAGGAGGCGGAAACGGAGGCGGAGGATAAGAAAACG GAGGCCGGCGATGGCGATGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGC CGAGGTTTGAACTTGAGCTATTTTCACGTATTTTCCGTTAACTGTTACGA CGCAACAAACGCAGCCAGCAATCATCTGCAGCAGAGCAATAGAATTAACA ACAACAGCAATGTCTTGAAACTAAAGCCCTTACACTTAACAGCAGAAATA ACACCCAATGTTTACCTAACAGCACAGATACTACCAACTTTCTACATACA TATATCAATATTTTATGGAGCCCGTCTTCGATTTCTATGCCCATAGGGAT TTGGGGGAGTTGTATAGATAATTGCAGAATATGAAGTGCAATCTTCCTTT TAAATTATACAAAATTTACAAAACTAACTTTTAAAACTACGAGATTTATT TAGAGACTTTTTAGACCTTCATCGGTAGAGCATGAAATCGAAGATCTTTC AATTTTTAACGAATTCATTATGACTACTGCGGTTCTTAAGCTAAGTTCAT GAGCGTATTTAAACGAGGGCATTCGATTGTGTTGGCCCCCGGTGAAAAGA CAATTTTAATCAAAATATTTATATTCATTAACTGACATCCAAACAACTTG TATGTACCATTTATACACACCTGTAATAAGGACTCGGAATACTTACTCGG AGCACTTAAGCCTAAGTTGGAGTAGTGTAGAGAGCTGAAATTTATTGTGC AGCCGTTATGTTAATGCTAAAACATAAAAAAGCGCTGCCCCTGTAATAAA AGGAAATATATTTGTATTAACTAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7358947..7360090 | 329..1472 | 100 | <- | Minus |
chr3L | 7360996..7361323 | 1..328 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 1..477 | 284..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 1..477 | 284..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RA | 1..477 | 284..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 1..477 | 284..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RA | 1..477 | 284..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 1..1472 | 1..1472 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 28..1499 | 1..1472 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 44..1515 | 1..1472 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 1..1472 | 1..1472 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sh3beta-RB | 44..1515 | 1..1472 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7366841..7367984 | 329..1472 | 100 | <- | Minus |
3L | 7368890..7369217 | 1..328 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7366841..7367984 | 329..1472 | 100 | <- | Minus |
3L | 7368890..7369217 | 1..328 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7366841..7367984 | 329..1472 | 100 | <- | Minus |
3L | 7368890..7369217 | 1..328 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7359941..7361084 | 329..1472 | 100 | <- | Minus |
arm_3L | 7361990..7362317 | 1..328 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7359941..7361084 | 329..1472 | 100 | <- | Minus |
3L | 7361990..7362317 | 1..328 | 100 | Minus |
Translation from 283 to 759
> LD12912.hyp MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE EAAEKAEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sh3beta-PB | 158 | CG8582-PB | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PA | 158 | CG8582-PA | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PD | 216 | CG8582-PD | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PC | 146 | CG8582-PC | 3..146 | 15..158 | 733 | 99.3 | Plus |
Translation from 283 to 759
> LD12912.pep MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE EAAEKAEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23792-PA | 159 | GF23792-PA | 1..159 | 1..158 | 659 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14969-PA | 165 | GG14969-PA | 1..150 | 1..144 | 672 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16617-PA | 155 | GH16617-PA | 1..142 | 1..142 | 650 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sh3beta-PB | 158 | CG8582-PB | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PA | 158 | CG8582-PA | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PD | 216 | CG8582-PD | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PC | 146 | CG8582-PC | 3..146 | 15..158 | 733 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12464-PA | 154 | GI12464-PA | 1..154 | 1..158 | 648 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24309-PA | 100 | GL24309-PA | 1..99 | 1..99 | 505 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21178-PA | 495 | GA21178-PA | 1..128 | 1..128 | 667 | 93.8 | Plus |
Dpse\GA21178-PB | 231 | GA21178-PB | 1..128 | 1..128 | 657 | 93.8 | Plus |
Dpse\GA21178-PC | 162 | GA21178-PC | 1..128 | 1..128 | 650 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13764-PA | 463 | GM13764-PA | 1..157 | 1..157 | 832 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13062-PA | 158 | GD13062-PA | 1..158 | 1..158 | 804 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12365-PA | 167 | GJ12365-PA | 1..129 | 1..129 | 658 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25310-PA | 453 | GK25310-PA | 1..127 | 1..127 | 681 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20417-PA | 473 | GE20417-PA | 1..123 | 1..123 | 686 | 99.2 | Plus |