Clone LD12912 Report

Search the DGRC for LD12912

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:129
Well:12
Vector:pBS SK-
Associated Gene/TranscriptSh3beta-RA
Protein status:LD12912.pep: gold
Preliminary Size:1520
Sequenced Size:1489

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8582 2001-01-01 Release 2 assignment
CG8582 2001-10-10 Blastp of sequenced clone
CG8582 2003-01-01 Sim4 clustering to Release 3
Sh3beta 2008-04-29 Release 5.5 accounting
Sh3beta 2008-08-15 Release 5.9 accounting
Sh3beta 2008-12-18 5.12 accounting

Clone Sequence Records

LD12912.complete Sequence

1489 bp (1489 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061162

> LD12912.complete
ATTTTCCACTCCTGATATCAAATATTTTTGCACTTTTATAAGCGTCGCCA
GGCAATTTTTTTATCCGCGTCTTTGCCGTTTTTACAGCCAATAAAACCAA
CGACCTTGCCCAGTGCGTGTGCCTTCGTCACCAGTGGAAAAACATTACGT
AGGGGCGCAGGACGGAAGAAAGCAGGAAAAGAAAAGATCTATAAATATTT
TTAATCGCCGTGAAAGTAGCCAGCAGATTTTAGTTGCAAAATATTATTTC
ATTTGCGGTGCGAGGACACAGTAATCTGCGAAAATGGTCTTGAAAGTCTA
CGTCAGCGGCATGTCCGGCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCG
TTCTGATGATCCTGGACAGCAAGAACATCAAGTACGACACGGTGGACATC
ACGGAGCCCGGCAAGGAATCCGAGAAGGAGCTGATGCAAAACAAATCGAC
AAGCAACGGTGGAACGGTCAGCGATCCAGAGCCCCGTCATCCGCTTCCTC
CGCAGCTGTTCAACGACGACGAGTACTGCGGTGATTACGACGCCTTTGAC
ATGGCCAACGAGATCGATACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGC
CGACACCACGGCAGTTAGTACCGCCCAAATCGAACTGAAGCAGGAGAACG
GCGATGCCAAGAAGGAGGAGGCGGAAACGGAGGCGGAGGATAAGAAAACG
GAGGCCGGCGATGGCGATGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGC
CGAGGTTTGAACTTGAGCTATTTTCACGTATTTTCCGTTAACTGTTACGA
CGCAACAAACGCAGCCAGCAATCATCTGCAGCAGAGCAATAGAATTAACA
ACAACAGCAATGTCTTGAAACTAAAGCCCTTACACTTAACAGCAGAAATA
ACACCCAATGTTTACCTAACAGCACAGATACTACCAACTTTCTACATACA
TATATCAATATTTTATGGAGCCCGTCTTCGATTTCTATGCCCATAGGGAT
TTGGGGGAGTTGTATAGATAATTGCAGAATATGAAGTGCAATCTTCCTTT
TAAATTATACAAAATTTACAAAACTAACTTTTAAAACTACGAGATTTATT
TAGAGACTTTTTAGACCTTCATCGGTAGAGCATGAAATCGAAGATCTTTC
AATTTTTAACGAATTCATTATGACTACTGCGGTTCTTAAGCTAAGTTCAT
GAGCGTATTTAAACGAGGGCATTCGATTGTGTTGGCCCCCGGTGAAAAGA
CAATTTTAATCAAAATATTTATATTCATTAACTGACATCCAAACAACTTG
TATGTACCATTTATACACACCTGTAATAAGGACTCGGAATACTTACTCGG
AGCACTTAAGCCTAAGTTGGAGTAGTGTAGAGAGCTGAAATTTATTGTGC
AGCCGTTATGTTAATGCTAAAACATAAAAAAGCGCTGCCCCTGTAATAAA
AGGAAATATATTTGTATTAACTAAAAAAAAAAAAAAAAA

LD12912.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1623 Sh3beta-RB 41..1523 1..1483 7415 100 Plus
Sh3beta-RA 1551 Sh3beta-RA 56..1451 88..1483 6980 100 Plus
Sh3beta.b 1034 Sh3beta.b 44..797 1..754 3770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7358947..7360092 1472..327 5730 100 Minus
chr3L 24539361 chr3L 7360992..7361323 332..1 1660 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7366830..7367986 1483..327 5785 100 Minus
3L 28110227 3L 7368886..7369217 332..1 1660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7359930..7361086 1483..327 5785 100 Minus
3L 28103327 3L 7361986..7362317 332..1 1660 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:31:57 has no hits.

LD12912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:32:56 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7358947..7360090 329..1472 100 <- Minus
chr3L 7360996..7361323 1..328 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:53 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..477 284..760 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:48 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..477 284..760 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:04 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 1..477 284..760 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:38 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..477 284..760 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:32:04 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 1..477 284..760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:46 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..1472 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:48 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 28..1499 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:04 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 44..1515 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:38 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..1472 1..1472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:32:04 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 44..1515 1..1472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:56 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7366841..7367984 329..1472 100 <- Minus
3L 7368890..7369217 1..328 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:56 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7366841..7367984 329..1472 100 <- Minus
3L 7368890..7369217 1..328 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:56 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7366841..7367984 329..1472 100 <- Minus
3L 7368890..7369217 1..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:04 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7359941..7361084 329..1472 100 <- Minus
arm_3L 7361990..7362317 1..328 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:14 Download gff for LD12912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7359941..7361084 329..1472 100 <- Minus
3L 7361990..7362317 1..328 100   Minus

LD12912.hyp Sequence

Translation from 283 to 759

> LD12912.hyp
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEV*

LD12912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-PB 158 CG8582-PB 1..158 1..158 806 100 Plus
Sh3beta-PA 158 CG8582-PA 1..158 1..158 806 100 Plus
Sh3beta-PD 216 CG8582-PD 1..157 1..157 802 100 Plus
Sh3beta-PE 485 CG8582-PE 1..157 1..157 802 100 Plus
Sh3beta-PC 146 CG8582-PC 3..146 15..158 733 99.3 Plus

LD12912.pep Sequence

Translation from 283 to 759

> LD12912.pep
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEV*

LD12912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23792-PA 159 GF23792-PA 1..159 1..158 659 85.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14969-PA 165 GG14969-PA 1..150 1..144 672 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16617-PA 155 GH16617-PA 1..142 1..142 650 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-PB 158 CG8582-PB 1..158 1..158 806 100 Plus
Sh3beta-PA 158 CG8582-PA 1..158 1..158 806 100 Plus
Sh3beta-PD 216 CG8582-PD 1..157 1..157 802 100 Plus
Sh3beta-PE 485 CG8582-PE 1..157 1..157 802 100 Plus
Sh3beta-PC 146 CG8582-PC 3..146 15..158 733 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12464-PA 154 GI12464-PA 1..154 1..158 648 82.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24309-PA 100 GL24309-PA 1..99 1..99 505 92.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21178-PA 495 GA21178-PA 1..128 1..128 667 93.8 Plus
Dpse\GA21178-PB 231 GA21178-PB 1..128 1..128 657 93.8 Plus
Dpse\GA21178-PC 162 GA21178-PC 1..128 1..128 650 93.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13764-PA 463 GM13764-PA 1..157 1..157 832 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13062-PA 158 GD13062-PA 1..158 1..158 804 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12365-PA 167 GJ12365-PA 1..129 1..129 658 95.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25310-PA 453 GK25310-PA 1..127 1..127 681 95.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20417-PA 473 GE20417-PA 1..123 1..123 686 99.2 Plus