BDGP Sequence Production Resources |
Search the DGRC for LD12946
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 129 |
Well: | 46 |
Vector: | pBS SK- |
Associated Gene/Transcript | MSBP-RA |
Protein status: | LD12946.pep: gold |
Preliminary Size: | 1584 |
Sequenced Size: | 1490 |
Gene | Date | Evidence |
---|---|---|
CG9066 | 2001-10-10 | Blastp of sequenced clone |
CG9066 | 2008-04-29 | Release 5.5 accounting |
CG9066 | 2008-08-15 | Release 5.9 accounting |
CG9066 | 2008-12-18 | 5.12 accounting |
1490 bp (1490 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061163
> LD12946.complete CTTTAACCTACTAAAATCATTGTCACAATTTTCATAGGTAGTTCGTAAAA TTGTAAATACAGTAAGTCGCAAAAGGTCGGTGCTGCTGAGCAATAAAGGT ATTAATTTATGAAATCATTGTTGCGCAGCAAAAATTGATCAGAGGAATAT GAAAATAATCGAATCGAGACGGCACGTCTAAAAGGTTGATGTACAATATT GTAACATTCAGTGCATAGCGACATCCAGTGCAGCAAGTAAATTAAGCGAA CAAGATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGGCCTACGACAAGG AAATCGGCAACAATCTAAACAACGATGATTCCTCATTTCTGGGCAACATA ATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCTCCTGGCCATCAT CTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCGAAGTGCCATCCG TGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAAATCCGACGCGAT TTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCAGCCGGATGGCCG TGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCAGCAAAGGAAGGC GTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCGGGTAGAGATGCC TCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGACAAGGATGAATA CGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACTCTGTGCGGGAAT GGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGTAAGCTATTGCGC AAGGGCGAGGAACCAACCAACTATGACGATGATGAGGACGAGGAGAATGT TAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGTCGAAAACTGAGA CTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTGCAAAGCAATGTA ACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTCTACCGACTGTTA GCGAATCGGGTTTTTTGTTTTGCTTTTGGATGTGGCTGTAATAGTTTACT TTCGGTTAGAAACACAACAAAACTAAATAGCATTTCCGACTCTTTTTGAT GCTGCCTCTGCTCCTTTAAAATCGAGAACAAGACCTATTTGGAAAACATT TAAAGAACACGCCCCAATTTGAACCGTACAAATCAAGGCATTAAATTTAT CGTGAACATTTCAAAAGAATTTAAAACAGATAAAATCGTTTTTGAATGTT ATTCTTAGAGTGCAGCCTTGACAAAAGCTATAGTTGTTACTATAATTCAC GTTGTGATGTGATCTTGTTCCATATATTATAGTCGTATATTCATACAAAT GTAACAAACGGAAATCATAAAATTATTTAAGGAGGAGGCCAATGTGTGGA GGGTATGGGAGTCATTTTCGTGGCAATATAAATTTAAATGTAACTATATT TGAAATACAAATTAAATACTTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MSBP-RA | 1708 | MSBP-RA | 191..1664 | 1..1474 | 7370 | 100 | Plus |
MSBP-RB | 1641 | MSBP-RB | 252..1597 | 129..1474 | 6730 | 100 | Plus |
MSBP.a | 1570 | MSBP.a | 235..1526 | 183..1474 | 6460 | 100 | Plus |
MSBP.a | 1570 | MSBP.a | 37..220 | 1..184 | 920 | 100 | Plus |
MSBP-RB | 1641 | MSBP-RB | 191..251 | 1..61 | 305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15777422..15778125 | 1471..768 | 3475 | 99.6 | Minus |
chrX | 22417052 | chrX | 15779155..15779590 | 618..183 | 2180 | 100 | Minus |
chrX | 22417052 | chrX | 15779763..15779948 | 186..1 | 930 | 100 | Minus |
chrX | 22417052 | chrX | 15778200..15778355 | 768..613 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15887563..15888269 | 1474..768 | 3535 | 100 | Minus |
X | 23542271 | X | 15889299..15889734 | 618..183 | 2180 | 100 | Minus |
X | 23542271 | X | 15889907..15890092 | 186..1 | 930 | 100 | Minus |
X | 23542271 | X | 15888344..15888499 | 768..613 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15895661..15896367 | 1474..768 | 3535 | 100 | Minus |
X | 23527363 | X | 15897397..15897832 | 618..183 | 2180 | 100 | Minus |
X | 23527363 | X | 15898005..15898190 | 186..1 | 930 | 100 | Minus |
X | 23527363 | X | 15896442..15896597 | 768..613 | 780 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15779158..15779588 | 185..615 | 100 | <- | Minus |
chrX | 15777422..15778124 | 769..1471 | 99 | <- | Minus |
chrX | 15778200..15778352 | 616..768 | 100 | <- | Minus |
chrX | 15779765..15779948 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9066-RA | 1..747 | 255..1001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RB | 1..747 | 255..1001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RA | 1..747 | 255..1001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9066-RA | 1..747 | 255..1001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RA | 1..747 | 255..1001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9066-RA | 1..1471 | 1..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RA | 1..1470 | 1..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RA | 18..1487 | 1..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9066-RA | 1..1471 | 1..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MSBP-RA | 18..1487 | 1..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15887566..15888268 | 769..1471 | 100 | <- | Minus |
X | 15888344..15888496 | 616..768 | 100 | <- | Minus |
X | 15889302..15889732 | 185..615 | 100 | <- | Minus |
X | 15889909..15890092 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15887566..15888268 | 769..1471 | 100 | <- | Minus |
X | 15888344..15888496 | 616..768 | 100 | <- | Minus |
X | 15889302..15889732 | 185..615 | 100 | <- | Minus |
X | 15889909..15890092 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15887566..15888268 | 769..1471 | 100 | <- | Minus |
X | 15888344..15888496 | 616..768 | 100 | <- | Minus |
X | 15889302..15889732 | 185..615 | 100 | <- | Minus |
X | 15889909..15890092 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15781599..15782301 | 769..1471 | 100 | <- | Minus |
arm_X | 15782377..15782529 | 616..768 | 100 | <- | Minus |
arm_X | 15783335..15783765 | 185..615 | 100 | <- | Minus |
arm_X | 15783942..15784125 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15895664..15896366 | 769..1471 | 100 | <- | Minus |
X | 15896442..15896594 | 616..768 | 100 | <- | Minus |
X | 15897400..15897830 | 185..615 | 100 | <- | Minus |
X | 15898007..15898190 | 1..184 | 100 | Minus |
Translation from 254 to 1000
> LD12946.pep MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20506-PA | 369 | GF20506-PA | 1..181 | 1..190 | 679 | 75.3 | Plus |
Dana\GF21661-PA | 272 | GF21661-PA | 12..190 | 26..190 | 408 | 46.9 | Plus |
Dana\GF15666-PA | 226 | GF15666-PA | 55..147 | 74..181 | 154 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19361-PA | 246 | GG19361-PA | 1..246 | 1..248 | 1221 | 93.1 | Plus |
Dere\GG10201-PA | 192 | GG10201-PA | 12..184 | 26..197 | 343 | 44.1 | Plus |
Dere\GG10253-PA | 217 | GG10253-PA | 13..199 | 41..223 | 156 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10626-PA | 196 | GH10626-PA | 14..181 | 25..190 | 710 | 77.4 | Plus |
Dgri\GH17751-PA | 281 | GH17751-PA | 69..167 | 83..181 | 164 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MSBP-PC | 248 | CG9066-PC | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PB | 248 | CG9066-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PA | 248 | CG9066-PA | 1..248 | 1..248 | 1285 | 100 | Plus |
CG16957-PB | 192 | CG16957-PB | 29..183 | 41..197 | 305 | 41.5 | Plus |
CG16957-PA | 192 | CG16957-PA | 29..183 | 41..197 | 305 | 41.5 | Plus |
t-cup-PA | 216 | CG31858-PA | 10..198 | 28..223 | 170 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19802-PA | 204 | GI19802-PA | 18..202 | 25..207 | 755 | 75.7 | Plus |
Dmoj\GI18221-PA | 209 | GI18221-PA | 20..178 | 31..181 | 323 | 43.4 | Plus |
Dmoj\GI15505-PA | 277 | GI15505-PA | 9..176 | 39..190 | 154 | 27.8 | Plus |
Dmoj\GI17278-PA | 242 | GI17278-PA | 13..153 | 33..181 | 144 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14498-PA | 120 | GL14498-PA | 20..117 | 24..121 | 435 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21515-PA | 139 | GA21515-PA | 20..117 | 24..121 | 435 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22513-PA | 248 | GM22513-PA | 1..248 | 1..248 | 1274 | 97.6 | Plus |
Dsec\GM25554-PA | 180 | GM25554-PA | 20..173 | 31..183 | 333 | 45.9 | Plus |
Dsec\GM26141-PA | 219 | GM26141-PA | 10..203 | 28..225 | 164 | 26.3 | Plus |
Dsec\GM16584-PA | 201 | GM16584-PA | 86..200 | 83..209 | 145 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24671-PA | 382 | GD24671-PA | 1..191 | 1..191 | 1010 | 100 | Plus |
Dsim\GD22062-PA | 196 | GD22062-PA | 20..185 | 31..197 | 325 | 44.4 | Plus |
Dsim\GD22113-PA | 219 | GD22113-PA | 10..201 | 28..223 | 155 | 25.6 | Plus |
Dsim\GD22889-PA | 201 | GD22889-PA | 86..200 | 83..209 | 145 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18097-PA | 201 | GJ18097-PA | 15..180 | 25..188 | 660 | 80.1 | Plus |
Dvir\GJ18128-PA | 206 | GJ18128-PA | 20..194 | 31..198 | 359 | 45.5 | Plus |
Dvir\GJ16155-PA | 237 | GJ16155-PA | 48..164 | 74..203 | 146 | 32.8 | Plus |
Dvir\GJ22842-PA | 226 | GJ22842-PA | 13..126 | 33..139 | 143 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15245-PA | 289 | GK15245-PA | 38..289 | 25..248 | 749 | 62.9 | Plus |
Dwil\GK16971-PA | 180 | GK16971-PA | 3..177 | 29..207 | 612 | 65.4 | Plus |
Dwil\GK19059-PA | 205 | GK19059-PA | 11..186 | 25..190 | 310 | 43.5 | Plus |
Dwil\GK15500-PA | 191 | GK15500-PA | 53..160 | 74..195 | 158 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16009-PA | 246 | GE16009-PA | 1..246 | 1..248 | 1203 | 91.9 | Plus |
Dyak\GE11623-PA | 206 | GE11623-PA | 12..199 | 26..197 | 332 | 37.9 | Plus |
Dyak\GE12218-PA | 217 | GE12218-PA | 50..142 | 74..181 | 144 | 32.4 | Plus |
Translation from 254 to 1000
> LD12946.hyp MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MSBP-PC | 248 | CG9066-PC | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PB | 248 | CG9066-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PA | 248 | CG9066-PA | 1..248 | 1..248 | 1285 | 100 | Plus |
CG16957-PB | 192 | CG16957-PB | 29..183 | 41..197 | 305 | 41.5 | Plus |
CG16957-PA | 192 | CG16957-PA | 29..183 | 41..197 | 305 | 41.5 | Plus |