Clone LD12946 Report

Search the DGRC for LD12946

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:129
Well:46
Vector:pBS SK-
Associated Gene/TranscriptMSBP-RA
Protein status:LD12946.pep: gold
Preliminary Size:1584
Sequenced Size:1490

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9066 2001-10-10 Blastp of sequenced clone
CG9066 2008-04-29 Release 5.5 accounting
CG9066 2008-08-15 Release 5.9 accounting
CG9066 2008-12-18 5.12 accounting

Clone Sequence Records

LD12946.complete Sequence

1490 bp (1490 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061163

> LD12946.complete
CTTTAACCTACTAAAATCATTGTCACAATTTTCATAGGTAGTTCGTAAAA
TTGTAAATACAGTAAGTCGCAAAAGGTCGGTGCTGCTGAGCAATAAAGGT
ATTAATTTATGAAATCATTGTTGCGCAGCAAAAATTGATCAGAGGAATAT
GAAAATAATCGAATCGAGACGGCACGTCTAAAAGGTTGATGTACAATATT
GTAACATTCAGTGCATAGCGACATCCAGTGCAGCAAGTAAATTAAGCGAA
CAAGATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGGCCTACGACAAGG
AAATCGGCAACAATCTAAACAACGATGATTCCTCATTTCTGGGCAACATA
ATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCTCCTGGCCATCAT
CTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCGAAGTGCCATCCG
TGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAAATCCGACGCGAT
TTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCAGCCGGATGGCCG
TGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCAGCAAAGGAAGGC
GTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCGGGTAGAGATGCC
TCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGACAAGGATGAATA
CGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACTCTGTGCGGGAAT
GGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGTAAGCTATTGCGC
AAGGGCGAGGAACCAACCAACTATGACGATGATGAGGACGAGGAGAATGT
TAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGTCGAAAACTGAGA
CTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTGCAAAGCAATGTA
ACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTCTACCGACTGTTA
GCGAATCGGGTTTTTTGTTTTGCTTTTGGATGTGGCTGTAATAGTTTACT
TTCGGTTAGAAACACAACAAAACTAAATAGCATTTCCGACTCTTTTTGAT
GCTGCCTCTGCTCCTTTAAAATCGAGAACAAGACCTATTTGGAAAACATT
TAAAGAACACGCCCCAATTTGAACCGTACAAATCAAGGCATTAAATTTAT
CGTGAACATTTCAAAAGAATTTAAAACAGATAAAATCGTTTTTGAATGTT
ATTCTTAGAGTGCAGCCTTGACAAAAGCTATAGTTGTTACTATAATTCAC
GTTGTGATGTGATCTTGTTCCATATATTATAGTCGTATATTCATACAAAT
GTAACAAACGGAAATCATAAAATTATTTAAGGAGGAGGCCAATGTGTGGA
GGGTATGGGAGTCATTTTCGTGGCAATATAAATTTAAATGTAACTATATT
TGAAATACAAATTAAATACTTAAAAAAAAAAAAAAAAAAA

LD12946.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RA 1708 MSBP-RA 191..1664 1..1474 7370 100 Plus
MSBP-RB 1641 MSBP-RB 252..1597 129..1474 6730 100 Plus
MSBP.a 1570 MSBP.a 235..1526 183..1474 6460 100 Plus
MSBP.a 1570 MSBP.a 37..220 1..184 920 100 Plus
MSBP-RB 1641 MSBP-RB 191..251 1..61 305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15777422..15778125 1471..768 3475 99.6 Minus
chrX 22417052 chrX 15779155..15779590 618..183 2180 100 Minus
chrX 22417052 chrX 15779763..15779948 186..1 930 100 Minus
chrX 22417052 chrX 15778200..15778355 768..613 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15887563..15888269 1474..768 3535 100 Minus
X 23542271 X 15889299..15889734 618..183 2180 100 Minus
X 23542271 X 15889907..15890092 186..1 930 100 Minus
X 23542271 X 15888344..15888499 768..613 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15895661..15896367 1474..768 3535 100 Minus
X 23527363 X 15897397..15897832 618..183 2180 100 Minus
X 23527363 X 15898005..15898190 186..1 930 100 Minus
X 23527363 X 15896442..15896597 768..613 780 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:55:30 has no hits.

LD12946.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:56:29 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15779158..15779588 185..615 100 <- Minus
chrX 15777422..15778124 769..1471 99 <- Minus
chrX 15778200..15778352 616..768 100 <- Minus
chrX 15779765..15779948 1..184 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:55 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..747 255..1001 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:20 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RB 1..747 255..1001 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:00 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 1..747 255..1001 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:19 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..747 255..1001 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:51:11 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 1..747 255..1001 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:16 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..1471 1..1471 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:20 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 1..1470 1..1470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:00 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 18..1487 1..1470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:20 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..1471 1..1471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:51:11 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 18..1487 1..1470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:29 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 15887566..15888268 769..1471 100 <- Minus
X 15888344..15888496 616..768 100 <- Minus
X 15889302..15889732 185..615 100 <- Minus
X 15889909..15890092 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:29 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 15887566..15888268 769..1471 100 <- Minus
X 15888344..15888496 616..768 100 <- Minus
X 15889302..15889732 185..615 100 <- Minus
X 15889909..15890092 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:29 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 15887566..15888268 769..1471 100 <- Minus
X 15888344..15888496 616..768 100 <- Minus
X 15889302..15889732 185..615 100 <- Minus
X 15889909..15890092 1..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:00 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15781599..15782301 769..1471 100 <- Minus
arm_X 15782377..15782529 616..768 100 <- Minus
arm_X 15783335..15783765 185..615 100 <- Minus
arm_X 15783942..15784125 1..184 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:29 Download gff for LD12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 15895664..15896366 769..1471 100 <- Minus
X 15896442..15896594 616..768 100 <- Minus
X 15897400..15897830 185..615 100 <- Minus
X 15898007..15898190 1..184 100   Minus

LD12946.pep Sequence

Translation from 254 to 1000

> LD12946.pep
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*

LD12946.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20506-PA 369 GF20506-PA 1..181 1..190 679 75.3 Plus
Dana\GF21661-PA 272 GF21661-PA 12..190 26..190 408 46.9 Plus
Dana\GF15666-PA 226 GF15666-PA 55..147 74..181 154 33.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19361-PA 246 GG19361-PA 1..246 1..248 1221 93.1 Plus
Dere\GG10201-PA 192 GG10201-PA 12..184 26..197 343 44.1 Plus
Dere\GG10253-PA 217 GG10253-PA 13..199 41..223 156 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10626-PA 196 GH10626-PA 14..181 25..190 710 77.4 Plus
Dgri\GH17751-PA 281 GH17751-PA 69..167 83..181 164 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-PC 248 CG9066-PC 1..248 1..248 1285 100 Plus
MSBP-PB 248 CG9066-PB 1..248 1..248 1285 100 Plus
MSBP-PA 248 CG9066-PA 1..248 1..248 1285 100 Plus
CG16957-PB 192 CG16957-PB 29..183 41..197 305 41.5 Plus
CG16957-PA 192 CG16957-PA 29..183 41..197 305 41.5 Plus
t-cup-PA 216 CG31858-PA 10..198 28..223 170 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19802-PA 204 GI19802-PA 18..202 25..207 755 75.7 Plus
Dmoj\GI18221-PA 209 GI18221-PA 20..178 31..181 323 43.4 Plus
Dmoj\GI15505-PA 277 GI15505-PA 9..176 39..190 154 27.8 Plus
Dmoj\GI17278-PA 242 GI17278-PA 13..153 33..181 144 30.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14498-PA 120 GL14498-PA 20..117 24..121 435 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21515-PA 139 GA21515-PA 20..117 24..121 435 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22513-PA 248 GM22513-PA 1..248 1..248 1274 97.6 Plus
Dsec\GM25554-PA 180 GM25554-PA 20..173 31..183 333 45.9 Plus
Dsec\GM26141-PA 219 GM26141-PA 10..203 28..225 164 26.3 Plus
Dsec\GM16584-PA 201 GM16584-PA 86..200 83..209 145 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24671-PA 382 GD24671-PA 1..191 1..191 1010 100 Plus
Dsim\GD22062-PA 196 GD22062-PA 20..185 31..197 325 44.4 Plus
Dsim\GD22113-PA 219 GD22113-PA 10..201 28..223 155 25.6 Plus
Dsim\GD22889-PA 201 GD22889-PA 86..200 83..209 145 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18097-PA 201 GJ18097-PA 15..180 25..188 660 80.1 Plus
Dvir\GJ18128-PA 206 GJ18128-PA 20..194 31..198 359 45.5 Plus
Dvir\GJ16155-PA 237 GJ16155-PA 48..164 74..203 146 32.8 Plus
Dvir\GJ22842-PA 226 GJ22842-PA 13..126 33..139 143 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15245-PA 289 GK15245-PA 38..289 25..248 749 62.9 Plus
Dwil\GK16971-PA 180 GK16971-PA 3..177 29..207 612 65.4 Plus
Dwil\GK19059-PA 205 GK19059-PA 11..186 25..190 310 43.5 Plus
Dwil\GK15500-PA 191 GK15500-PA 53..160 74..195 158 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16009-PA 246 GE16009-PA 1..246 1..248 1203 91.9 Plus
Dyak\GE11623-PA 206 GE11623-PA 12..199 26..197 332 37.9 Plus
Dyak\GE12218-PA 217 GE12218-PA 50..142 74..181 144 32.4 Plus

LD12946.hyp Sequence

Translation from 254 to 1000

> LD12946.hyp
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*

LD12946.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-PC 248 CG9066-PC 1..248 1..248 1285 100 Plus
MSBP-PB 248 CG9066-PB 1..248 1..248 1285 100 Plus
MSBP-PA 248 CG9066-PA 1..248 1..248 1285 100 Plus
CG16957-PB 192 CG16957-PB 29..183 41..197 305 41.5 Plus
CG16957-PA 192 CG16957-PA 29..183 41..197 305 41.5 Plus