Clone LD12948 Report

Search the DGRC for LD12948

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:129
Well:48
Vector:pBS SK-
Associated Gene/Transcriptntc-RA
Protein status:LD12948.pep: gold
Preliminary Size:1647
Sequenced Size:1562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10855 2001-01-01 Release 2 assignment
CG10855 2002-03-19 Blastp of sequenced clone
CG10855 2003-01-01 Sim4 clustering to Release 3
CG10855 2008-04-29 Release 5.5 accounting
CG10855 2008-08-15 Release 5.9 accounting
CG10855 2008-12-18 5.12 accounting

Clone Sequence Records

LD12948.complete Sequence

1562 bp (1562 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094784

> LD12948.complete
CCAGCTGATTATTCGCTAAATAACCAATTGTTTTTTCGCGAATTTTTCAA
TTTTCTGTGATTTTTGCGGCTACAAAATCGAAAACTATATTAAGCAAAAT
ACATACGAACCTGGCAATTGCGACTGCTTATGTAATATCTGTGACAAACC
AAGTTTTCTAGAAAATACCTGCCGATGCGTCGTTGCGCTTTGTTTTTGTT
GCGTGAATAAGAATCGTTGGATATTTGTACATTCGCAATTTGTTGTAAAT
ATGTTTAAATCTTAAGTGCCACAGCTTATCAACGAAGTAATATAATTGCG
ATTCCCTCCTTTTGTTAATCAGTCCCACTATATAGCACTAAATATAAAAA
TTGAGTGCACAAATCGCAGTATGCCCCATTTTCTGATTGTCATTCCGAAA
ACAAACAATGACAGTCGCATTGAAAGTTTAAATCAAATCGTTTCCCAGAA
AATTCGTACGTAAATATCTGAAATGTCAGACACTAAATCCGAAATTGAGG
GCTTTATAGCCATTCCCACGACATCGGGCGAACAACAACAACAACAGCCG
CAACAGCAGCAAAATGAGCAACAAGTGGTCGGCACAAAGGACATTAAAGC
TCCTGATCAGGTGGGGAAAAAGCAGCGACCACGTTTGATACAAGAGAAGA
GCACCCAGGAGACAAATCCGTTGATCCTGGAGCATGCTACTCTGGAATGG
GTGCCGCAGCATATGGATAAGCTACTGAATCAGTATCAGGAATGTCGCAA
AATGCCGGCTGCCGAGTGGCTTCATTTGTTGACTTACCTGGTGGCCCTGG
AATGCGGATTTGTGGAGGAGGAGACATTTGCCCAGAAGAGACACCTCATT
CAACCCGTACCATCATTTAGCAGCTTTCACGCCCAGAATGTGCGAATCCT
GAGCGAACAACCAGCTAGATATGAAGTGTGCTTCAATGACACCGTCTATA
TAATGCGACTGAGAACACTATTGGACAAGCATGCTCCCGAGGAGACTTCT
CTGGTGGCTGCCCTTCAGTGCCGGCTGATGGCCGTCAGCCTGGGGGATCA
GCTTATGATCACCCTGTCCCCAGCACCTCCGTCGAAGGAGCCTGGCTACA
GCGTCAGCCTGTCTATCGGACGCTATGTACTGAATATTCAGGCGAAGAAC
AAGCCCATCTACCATCGCTTTCGGAAGCTGGATGAACTCTCATATCAGCT
GAAACAGCACTTGTTCCAGCCCATGCGATCGCAGCAACTAATGCAGATGG
AGATGAAGCTACAGCCCTCGCTATTGGGCCTCCCGGACGAATTGTACTTC
GAGATCTTCAGATATCTGGACAAAAGCCAGCTAAATGTGGTGGCCAGGGT
CAATAGACATCTTCATTTCTACAGCAAGGAAGTGGAGCGAAAAAGGCTAA
AGGGCGGCAGAAGCTAAGCTCTTGTTTTAATCGAAGCCGGTTTAAGCGAT
TTTATAAATATTATTATATTAATAAATTATTAAGTGGTGCATAAAGATTC
TCGGGAATCATTGTATGTCAATAAATATATTTGCTTATTCAAGTAAAAAA
AAAAAAAAAAAA

LD12948.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10855-RA 1832 CG10855-RA 191..1737 1..1547 7735 100 Plus
CG10855.a 1555 CG10855.a 636..1555 625..1544 4600 100 Plus
CG10855.a 1555 CG10855.a 26..636 1..611 3055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3803269..3804202 1544..611 4505 98.8 Minus
chr3L 24539361 chr3L 3805258..3805868 611..1 3055 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3803829..3804765 1547..611 4685 100 Minus
3L 28110227 3L 3805821..3806431 611..1 3055 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3803829..3804765 1547..611 4685 100 Minus
3L 28103327 3L 3805821..3806431 611..1 3055 100 Minus
Blast to na_te.dros performed 2019-03-16 10:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 1284..1354 1517..1447 112 62 Minus

LD12948.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:25 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3803269..3804201 612..1544 98 <- Minus
chr3L 3805258..3805868 1..611 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:57 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
CG10855-RA 1..945 473..1417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:57 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 1..945 473..1417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:41:38 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 1..945 473..1417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:12 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
CG10855-RA 1..945 473..1417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:18 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 1..945 473..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:22 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
CG10855-RA 26..1567 1..1542 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:57 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 26..1567 1..1542 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:41:38 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 29..1572 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:12 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
CG10855-RA 26..1567 1..1542 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:18 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
ntc-RA 29..1572 1..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:25 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3803832..3804764 612..1544 100 <- Minus
3L 3805821..3806431 1..611 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:25 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3803832..3804764 612..1544 100 <- Minus
3L 3805821..3806431 1..611 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:25 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3803832..3804764 612..1544 100 <- Minus
3L 3805821..3806431 1..611 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:41:38 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3803832..3804764 612..1544 100 <- Minus
arm_3L 3805821..3806431 1..611 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:39 Download gff for LD12948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3803832..3804764 612..1544 100 <- Minus
3L 3805821..3806431 1..611 100   Minus

LD12948.pep Sequence

Translation from 472 to 1416

> LD12948.pep
MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQVGKK
QRPRLIQEKSTQETNPLILEHATLEWVPQHMDKLLNQYQECRKMPAAEWL
HLLTYLVALECGFVEEETFAQKRHLIQPVPSFSSFHAQNVRILSEQPARY
EVCFNDTVYIMRLRTLLDKHAPEETSLVAALQCRLMAVSLGDQLMITLSP
APPSKEPGYSVSLSIGRYVLNIQAKNKPIYHRFRKLDELSYQLKQHLFQP
MRSQQLMQMEMKLQPSLLGLPDELYFEIFRYLDKSQLNVVARVNRHLHFY
SKEVERKRLKGGRS*

LD12948.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10259-PA 310 GF10259-PA 1..309 1..313 909 62.1 Plus
Dana\GF11140-PA 105 GF11140-PA 1..104 161..313 284 45.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14246-PA 312 GG14246-PA 1..312 1..314 1395 87.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15048-PA 642 GH15048-PA 54..281 66..297 607 53.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
ntc-PA 314 CG10855-PA 1..314 1..314 1622 100 Plus
CG32264-PK 822 CG32264-PK 1..46 1..46 233 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12807-PA 314 GI12807-PA 45..309 43..312 617 51.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20997-PA 278 GL20997-PA 34..207 42..214 435 54 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10601-PA 639 GA10601-PA 14..286 15..292 714 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14039-PA 323 GM14039-PA 1..311 1..313 1423 88.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13318-PA 323 GD13318-PA 1..311 1..313 1440 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12952-PA 349 GJ12952-PA 98..347 56..308 651 52.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20365-PA 262 GK20365-PA 18..258 67..308 658 52.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20675-PA 314 GE20675-PA 1..314 1..314 1366 85.7 Plus

LD12948.hyp Sequence

Translation from 472 to 1416

> LD12948.hyp
MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQVGKK
QRPRLIQEKSTQETNPLILEHATLEWVPQHMDKLLNQYQECRKMPAAEWL
HLLTYLVALECGFVEEETFAQKRHLIQPVPSFSSFHAQNVRILSEQPARY
EVCFNDTVYIMRLRTLLDKHAPEETSLVAALQCRLMAVSLGDQLMITLSP
APPSKEPGYSVSLSIGRYVLNIQAKNKPIYHRFRKLDELSYQLKQHLFQP
MRSQQLMQMEMKLQPSLLGLPDELYFEIFRYLDKSQLNVVARVNRHLHFY
SKEVERKRLKGGRS*

LD12948.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
ntc-PA 314 CG10855-PA 1..314 1..314 1622 100 Plus
CG32264-PK 822 CG32264-PK 1..46 1..46 233 100 Plus