BDGP Sequence Production Resources |
Search the DGRC for LD12948
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 129 |
Well: | 48 |
Vector: | pBS SK- |
Associated Gene/Transcript | ntc-RA |
Protein status: | LD12948.pep: gold |
Preliminary Size: | 1647 |
Sequenced Size: | 1562 |
Gene | Date | Evidence |
---|---|---|
CG10855 | 2001-01-01 | Release 2 assignment |
CG10855 | 2002-03-19 | Blastp of sequenced clone |
CG10855 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10855 | 2008-04-29 | Release 5.5 accounting |
CG10855 | 2008-08-15 | Release 5.9 accounting |
CG10855 | 2008-12-18 | 5.12 accounting |
1562 bp (1562 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094784
> LD12948.complete CCAGCTGATTATTCGCTAAATAACCAATTGTTTTTTCGCGAATTTTTCAA TTTTCTGTGATTTTTGCGGCTACAAAATCGAAAACTATATTAAGCAAAAT ACATACGAACCTGGCAATTGCGACTGCTTATGTAATATCTGTGACAAACC AAGTTTTCTAGAAAATACCTGCCGATGCGTCGTTGCGCTTTGTTTTTGTT GCGTGAATAAGAATCGTTGGATATTTGTACATTCGCAATTTGTTGTAAAT ATGTTTAAATCTTAAGTGCCACAGCTTATCAACGAAGTAATATAATTGCG ATTCCCTCCTTTTGTTAATCAGTCCCACTATATAGCACTAAATATAAAAA TTGAGTGCACAAATCGCAGTATGCCCCATTTTCTGATTGTCATTCCGAAA ACAAACAATGACAGTCGCATTGAAAGTTTAAATCAAATCGTTTCCCAGAA AATTCGTACGTAAATATCTGAAATGTCAGACACTAAATCCGAAATTGAGG GCTTTATAGCCATTCCCACGACATCGGGCGAACAACAACAACAACAGCCG CAACAGCAGCAAAATGAGCAACAAGTGGTCGGCACAAAGGACATTAAAGC TCCTGATCAGGTGGGGAAAAAGCAGCGACCACGTTTGATACAAGAGAAGA GCACCCAGGAGACAAATCCGTTGATCCTGGAGCATGCTACTCTGGAATGG GTGCCGCAGCATATGGATAAGCTACTGAATCAGTATCAGGAATGTCGCAA AATGCCGGCTGCCGAGTGGCTTCATTTGTTGACTTACCTGGTGGCCCTGG AATGCGGATTTGTGGAGGAGGAGACATTTGCCCAGAAGAGACACCTCATT CAACCCGTACCATCATTTAGCAGCTTTCACGCCCAGAATGTGCGAATCCT GAGCGAACAACCAGCTAGATATGAAGTGTGCTTCAATGACACCGTCTATA TAATGCGACTGAGAACACTATTGGACAAGCATGCTCCCGAGGAGACTTCT CTGGTGGCTGCCCTTCAGTGCCGGCTGATGGCCGTCAGCCTGGGGGATCA GCTTATGATCACCCTGTCCCCAGCACCTCCGTCGAAGGAGCCTGGCTACA GCGTCAGCCTGTCTATCGGACGCTATGTACTGAATATTCAGGCGAAGAAC AAGCCCATCTACCATCGCTTTCGGAAGCTGGATGAACTCTCATATCAGCT GAAACAGCACTTGTTCCAGCCCATGCGATCGCAGCAACTAATGCAGATGG AGATGAAGCTACAGCCCTCGCTATTGGGCCTCCCGGACGAATTGTACTTC GAGATCTTCAGATATCTGGACAAAAGCCAGCTAAATGTGGTGGCCAGGGT CAATAGACATCTTCATTTCTACAGCAAGGAAGTGGAGCGAAAAAGGCTAA AGGGCGGCAGAAGCTAAGCTCTTGTTTTAATCGAAGCCGGTTTAAGCGAT TTTATAAATATTATTATATTAATAAATTATTAAGTGGTGCATAAAGATTC TCGGGAATCATTGTATGTCAATAAATATATTTGCTTATTCAAGTAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Porto1 | 4682 | Porto1 DOC5 4682bp | 1284..1354 | 1517..1447 | 112 | 62 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3803269..3804201 | 612..1544 | 98 | <- | Minus |
chr3L | 3805258..3805868 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10855-RA | 1..945 | 473..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 1..945 | 473..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 1..945 | 473..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10855-RA | 1..945 | 473..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 1..945 | 473..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10855-RA | 26..1567 | 1..1542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 26..1567 | 1..1542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 29..1572 | 1..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10855-RA | 26..1567 | 1..1542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ntc-RA | 29..1572 | 1..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3803832..3804764 | 612..1544 | 100 | <- | Minus |
3L | 3805821..3806431 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3803832..3804764 | 612..1544 | 100 | <- | Minus |
3L | 3805821..3806431 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3803832..3804764 | 612..1544 | 100 | <- | Minus |
3L | 3805821..3806431 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3803832..3804764 | 612..1544 | 100 | <- | Minus |
arm_3L | 3805821..3806431 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3803832..3804764 | 612..1544 | 100 | <- | Minus |
3L | 3805821..3806431 | 1..611 | 100 | Minus |
Translation from 472 to 1416
> LD12948.pep MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQVGKK QRPRLIQEKSTQETNPLILEHATLEWVPQHMDKLLNQYQECRKMPAAEWL HLLTYLVALECGFVEEETFAQKRHLIQPVPSFSSFHAQNVRILSEQPARY EVCFNDTVYIMRLRTLLDKHAPEETSLVAALQCRLMAVSLGDQLMITLSP APPSKEPGYSVSLSIGRYVLNIQAKNKPIYHRFRKLDELSYQLKQHLFQP MRSQQLMQMEMKLQPSLLGLPDELYFEIFRYLDKSQLNVVARVNRHLHFY SKEVERKRLKGGRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10259-PA | 310 | GF10259-PA | 1..309 | 1..313 | 909 | 62.1 | Plus |
Dana\GF11140-PA | 105 | GF11140-PA | 1..104 | 161..313 | 284 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14246-PA | 312 | GG14246-PA | 1..312 | 1..314 | 1395 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15048-PA | 642 | GH15048-PA | 54..281 | 66..297 | 607 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ntc-PA | 314 | CG10855-PA | 1..314 | 1..314 | 1622 | 100 | Plus |
CG32264-PK | 822 | CG32264-PK | 1..46 | 1..46 | 233 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12807-PA | 314 | GI12807-PA | 45..309 | 43..312 | 617 | 51.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20997-PA | 278 | GL20997-PA | 34..207 | 42..214 | 435 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10601-PA | 639 | GA10601-PA | 14..286 | 15..292 | 714 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14039-PA | 323 | GM14039-PA | 1..311 | 1..313 | 1423 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13318-PA | 323 | GD13318-PA | 1..311 | 1..313 | 1440 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12952-PA | 349 | GJ12952-PA | 98..347 | 56..308 | 651 | 52.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20365-PA | 262 | GK20365-PA | 18..258 | 67..308 | 658 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20675-PA | 314 | GE20675-PA | 1..314 | 1..314 | 1366 | 85.7 | Plus |
Translation from 472 to 1416
> LD12948.hyp MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQVGKK QRPRLIQEKSTQETNPLILEHATLEWVPQHMDKLLNQYQECRKMPAAEWL HLLTYLVALECGFVEEETFAQKRHLIQPVPSFSSFHAQNVRILSEQPARY EVCFNDTVYIMRLRTLLDKHAPEETSLVAALQCRLMAVSLGDQLMITLSP APPSKEPGYSVSLSIGRYVLNIQAKNKPIYHRFRKLDELSYQLKQHLFQP MRSQQLMQMEMKLQPSLLGLPDELYFEIFRYLDKSQLNVVARVNRHLHFY SKEVERKRLKGGRS*