Clone LD12957 Report

Search the DGRC for LD12957

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:129
Well:57
Vector:pBS SK-
Associated Gene/Transcriptfs(2)ltoPP43-RB
Protein status:LD12957.pep: gold
Sequenced Size:1862

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10528 2008-01-31 Manual selection by Ken Wan
fs(2)ltoPP43 2008-04-29 Picked prior to 5.5
fs(2)ltoPP43 2008-12-18 5.12 accounting

Clone Sequence Records

LD12957.complete Sequence

1862 bp assembled on 2008-10-27

GenBank Submission: BT050539.1

> LD12957.complete
CGGTCACACTGCGCGTCGCACACTTTTAATTGTTTCGCTTCGCCTTTCGT
TGTTTGTCGTATTCTCCGAATTAATCAAAATGCCAGCGGTTGTGCGAATC
AAGCGACGCATCGACGAGGAGCCTCAGACGGCATTTGTGCTAAACGGCAA
GCGGCGGCGCCTCCACAACGATGAGAACGCCCTGGAGGACGCGGGAGCGG
TGGCGGGAGCGGTGGCGGGAGCGGTGGCATCAGACAAAGACGAACTGACC
ACCGTGCTCAAGTTTGCCGGCACGCTGGAAAAGCAGGACGACTGTGCCAC
TCGTAAATTCGCCGCTGCCAGGCTCAACAAGGCCGCAGCCCGTGATCTGG
TGCAACAGCAGCGCTCCAATGATGCAGCCATTGCTAGTGCGCTGCGCAGA
GATCGCCAGCGGCAGGAGGCTCAGGAGAACTCAAGGGAGCAGCGTTTCCG
GGTCGTAAACTGCCTGCGCAGCACGCTCGAAAACAGTGCCGCAGAAGCGG
AATGCCCGGAGAGCCAGAGTCATGAGTCCAGCAGCCACATAACCATCGTG
GACATTGAATCGCAACAGCAACAGCACATGGGCACTGCAAGTGCAGCAGC
TGAGGAGCAGCAGCAGCAGGAGATAGCACCCAGCCAGGATCAGCAGCAGC
CGGCCGATTCGGACGTGGGCTATGTCTACGATCTATATGTTCCCGAGAAC
GAGATGCAGGCGGCATATGTGGACATGATGGACGACAACTACTTAAGGTT
TGTCATTCAAGTTGAGCCACAGAAAACGTTGAGCATTACCAATTACTATA
TGTAATCGATCACCACTACACTTATGTACTATATGGAATATATATATCTA
AGCGGTGTGTCTGTGTGTCGGTGCTATGGGCGTATCTGTGTGGGTGTGGG
TGTGCGTGTGTCTGTGTTCGTTGTCCTCGGGCGCAGTCTCATACTTGCAT
ATTATCCTTATCATCTAGACACGATTGCAATCACTACAGCTCAATAATAC
GATTCGTTCGTTCTCCATAAGGTTGTATTATCCGTTTAATTACTACAACA
ACTGCTACTGGTAAACAAGAAATAAACTAAATGGAGAGAGACAGACAAAG
TCGCAGGCACTTAGGAAGTGTGAGGACAGGAGACACCCAATGCCCCACCC
ACGACAATAAAAAAAAGGACTGCAACTGGCAACTCACATCACTTACAGTT
CATTGCAGTCAGCACATTTGACAAATGCCCAAAACTAACGATAAAACATT
GTTTTTATGAGTAAACACGGCATGATCTGAAAACGAATGATTCTGGAAGC
TATTTATTTGATTTGTTACTGTGAGATTTCGTTCAATTCTAACACAACTA
TGTTATGCCATATTCCATTTAAAAAATATGTTAGATCTAAACTTCTTAGT
TTAAATAATGTATCATAGTTATGTAAAGTTCCCATAAAGTTCCCTCTTGC
CAAAGTTTTTAATAAAAATAAGATGTATCCTGCTAAAAACGCACAATTAG
TGTACTATTTGGAATCGTTTTAGGCAAATGTCTCTCATTACCTTATGTTC
ATAGAATTAATTAGCTATTAGATTAGAATAATTTACCCCCACACACGAAC
ACACACACACCGCATTTTTTTGAAAAACAGCTCACCGAGCATTTTTCGTT
TAGTTTCCGCCAGTTGTCAGTTGCCTTTTTGGTTCTTTTTCCATTCCGAC
AATAAACAAAAAAAAACGGATAACACTAGTGCTGAAGTCTAATTAAGTGC
ATAGTCTTAGTTTGTTTTGCTTTATATCTGTTGGGGCCTAGCGTTGCCCG
AAATCGAATATAAACTAAATAAAGAAACTCTCAAAATACGTGACAAAAAA
AAAAAAAAAAAA

LD12957.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-RB 1960 fs(2)ltoPP43-RB 95..1941 1..1847 9235 100 Plus
fs(2)ltoPP43.b 1647 fs(2)ltoPP43.b 770..1647 967..1844 4390 100 Plus
fs(2)ltoPP43.a 1651 fs(2)ltoPP43.a 825..1651 1018..1844 4135 100 Plus
fs(2)ltoPP43.a 1651 fs(2)ltoPP43.a 82..831 1..750 3750 100 Plus
fs(2)ltoPP43.b 1647 fs(2)ltoPP43.b 25..771 1..747 3735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19791970..19793531 1844..283 7795 99.9 Minus
chr2L 23010047 chr2L 19794023..19794297 287..1 1205 95.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19793483..19795047 1847..283 7825 100 Minus
2L 23513712 2L 19795539..19795825 287..1 1435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19793483..19795047 1847..283 7825 100 Minus
2L 23513712 2L 19795539..19795825 287..1 1435 100 Minus
Blast to na_te.dros performed 2019-03-16 21:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 4396..4548 1468..1316 125 57.1 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 2273..2329 1669..1613 123 68.4 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 897..951 1035..1091 118 70.2 Plus
Stalker 7256 Stalker STALKER 7256bp 849..897 1034..1084 115 72.5 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 2497..2548 1281..1231 113 73.6 Minus

LD12957.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:56 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19791970..19792896 918..1844 99 == Minus
chr2L 19792960..19793163 651..854 100 == Minus
chr2L 19793253..19793527 287..561 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:59 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 1..726 80..805 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:17:05 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 1..726 80..805 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:54 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 1..726 80..805 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:51 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 1..726 80..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:56:51 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 25..1868 1..1844 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:17:05 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 25..1868 1..1844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:54 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 27..1870 1..1844 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-27 10:00:08 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 25..1868 1..1844 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:51 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 27..1870 1..1844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:56 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19793486..19795043 287..1844 100 <- Minus
2L 19795540..19795825 1..286 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:56 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19793486..19795043 287..1844 100 <- Minus
2L 19795540..19795825 1..286 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:56 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19793486..19795043 287..1844 100 <- Minus
2L 19795540..19795825 1..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:54 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19793486..19795043 287..1844 100 <- Minus
arm_2L 19795540..19795825 1..286 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:48:07 Download gff for LD12957.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19793486..19795043 287..1844 100 <- Minus
2L 19795540..19795825 1..286 100   Minus

LD12957.hyp Sequence

Translation from 0 to 804

> LD12957.hyp
GHTARRTLLIVSLRLSLFVVFSELIKMPAVVRIKRRIDEEPQTAFVLNGK
RRRLHNDENALEDAGAVAGAVAGAVASDKDELTTVLKFAGTLEKQDDCAT
RKFAAARLNKAAARDLVQQQRSNDAAIASALRRDRQRQEAQENSREQRFR
VVNCLRSTLENSAAEAECPESQSHESSSHITIVDIESQQQQHMGTASAAA
EEQQQQEIAPSQDQQQPADSDVGYVYDLYVPENEMQAAYVDMMDDNYLRF
VIQVEPQKTLSITNYYM*

LD12957.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-PB 241 CG10528-PB 1..241 27..267 1208 100 Plus
fs(2)ltoPP43-PC 236 CG10528-PC 1..223 27..249 1116 100 Plus
fs(2)ltoPP43-PA 367 CG10528-PA 1..225 27..251 1112 98.7 Plus

LD12957.pep Sequence

Translation from 1 to 804

> LD12957.pep
GHTARRTLLIVSLRLSLFVVFSELIKMPAVVRIKRRIDEEPQTAFVLNGK
RRRLHNDENALEDAGAVAGAVAGAVASDKDELTTVLKFAGTLEKQDDCAT
RKFAAARLNKAAARDLVQQQRSNDAAIASALRRDRQRQEAQENSREQRFR
VVNCLRSTLENSAAEAECPESQSHESSSHITIVDIESQQQQHMGTASAAA
EEQQQQEIAPSQDQQQPADSDVGYVYDLYVPENEMQAAYVDMMDDNYLRF
VIQVEPQKTLSITNYYM*

LD12957.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15472-PA 245 GF15472-PA 1..245 27..267 881 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21605-PA 236 GG21605-PA 1..236 27..267 955 89.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13041-PA 239 GH13041-PA 1..239 27..267 667 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-PB 241 CG10528-PB 1..241 27..267 1208 100 Plus
fs(2)ltoPP43-PC 236 CG10528-PC 1..223 27..249 1116 100 Plus
fs(2)ltoPP43-PA 367 CG10528-PA 1..225 27..251 1112 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18188-PA 360 GI18188-PA 1..212 27..248 619 59.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25618-PA 383 GL25618-PA 1..231 27..251 745 69.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10373-PA 381 GA10373-PA 1..231 27..251 745 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16984-PA 236 GM16984-PA 1..236 27..267 1105 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21732-PA 360 GD21732-PA 1..220 27..251 1040 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14672-PA 362 GJ14672-PA 1..212 27..248 614 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15214-PA 359 GK15214-PA 1..214 27..248 591 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12626-PA 359 GE12626-PA 1..220 27..251 849 87.6 Plus