Clone LD13050 Report

Search the DGRC for LD13050

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:130
Well:50
Vector:pBS SK-
Associated Gene/TranscriptM6-RB
Protein status:LD13050.pep: gold
Preliminary Size:2000
Sequenced Size:1963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7540 2003-01-01 Sim4 clustering to Release 3
CG7540 2003-07-26 Blastp of sequenced clone
M6 2008-04-29 Release 5.5 accounting
M6 2008-08-15 Release 5.9 accounting
M6 2008-12-18 5.12 accounting

Clone Sequence Records

LD13050.complete Sequence

1963 bp (1963 high quality bases) assembled on 2003-07-26

GenBank Submission: BT010069

> LD13050.complete
ATTCGTTGCTCGGTGGTTATTGCTATAAACCCTAATTATAATTATTGGGA
GGCCTCTTGATTGGGTGACGTCGTCGGTGTGCGTGTGATTCACTGTGTGC
CGTTTAGCTTGGGCTAGCCCAACTTCAGCTCCAGCTACGTTCCGTAACTA
AGGTCTTTGTATAAATTCCGACTTCGACTCCATAAAGCGTTGTGCAGTAT
GCCGGGCAAGGGGAACAACCGCGATCGCATCCGGGATCCCCGCGAGGAGA
TCCTGCTCGAGACGAACTTTGAGGACGACGGCGGAGTCCTGACGCGCGCC
TACAACGGAAATCCGTATAACCCGACCATCCAGAACCGTCGGCGCAACTC
GTACCGCTCGGATCACTCCTTGGACAGGTACACGGAGCGCGGAGGCGAAG
GAGAATGCTGCCAATCCTGCATGGCGCGTATTCCCTACGCCACCCTGATA
GCCACTCTGATGTGTCTCCTGGGAGTAGGAATCTTCTGCTTCACCATGTA
CCGAGGAGCCTCTCTCACCGTTATAATGGTTGACCAGGTTTTCCACCTAC
GCCTGATATGGATCGAAGCTGTGCAAATGATTTTCGTAATAATTGGAGCG
GGCATGGCCGCCCTCGGATTTATGATCCTGTTCGTCGGATTTCTGGCCAC
CGGAGCCACCAGATACAAGGTTTACCGGGCGTGGCGGTCGCGAGTGGGTG
GGCGAATCTCGTGCGCCGTCCTTATGGGGATAACCTACCTGCTAAACTTT
GTGTGGAGTCTGATCCTTTGTTTCCTGGTAGTGGTTACCTTCATCTACAC
CATGTTCTGGAACATGTGCACCAGTGTTGAGCACTCTCAAAGCTGCATTG
ATCTGACGCAATTCCATTTTATGTTCCCGCCAAACACGAAACTGGAGGAC
ATGAAGGTCTGCGAAAAGTACGAGATAAAGGCATTCTGCAAAGACGGTGT
TGAGAACGCCGAGGTGATGTTTATATTGGCCACTCTGTCCACCCTTTTGG
TGCTGCTCAGTCTGGTCCACTACCTGATGTGCCTGTCTGCTAACTACGCC
CACATTCGGGACCACGAAAAGTTCCAGGAGCTACAGGAGATCCAGAACCT
GAACGAGCTGGAGTACAGTGCCACCTCGAAGGATCGCTTCTAGGACATAT
TTCAGAAGATTCAGTTTGAGCTTAAGGACAAGTCTAGCGCTCTTTGAGCG
ATTTACGCACAATACAACGAACAGTGAACCACCTTCCAACGAAACCCAAC
ATGCTATAGTTTAGATTTTTCATTTAGACCTAAGATTTATGTTGAGTTTT
CAGTTTTGCTAGTTCATTTAATGAGTTGGTCGCTTTGACTGTTTATCGTT
TTATTAGTTGAGCAGTTGCACCATGTTTAAACTGCCAAATCAAATGTTAC
ACTGAAATTATGCTTCTTATCTACTGTACTGTTCCACTGACTTTTTTCTT
CCGTCCATTGACTTAAGTTAGTTTACATTTATTATTTTTGCGTTTTTTAT
TACATTGCAATCAATAAATCCATGCCAACACAATAGTCAGGTGCTTATGC
TCAAATTGATTCTTCTGAATTGCCGAATGCATTTTATTAATATACGGATA
GTTAATCGCCACTTATTATTATTACATAGTGTAATCCATCCGTGCATGAT
TGTCTTTAAAATCTGTACAAGAAATTACTTTTAATGTGTATATTTCACTA
TTGCATCTACAACTTTGAAGCAATACGAATCCTGCCGTAGTAATTTGTAA
ATGCGGTAGCATCAGTTTAGTAAGGCAATGTTAGTCTAAAGATTTTACTA
AGTATAAAAGTATAAATTTATTTATCTCGTATTTAATATATAAACGTACG
TAACAATAATATATTTTATACTAAAATTTTCTAACCTCACACTTATACAA
AAAGTATAAACTTTTGAAAATCAAATAAAGAACTTGAGGTAAAGCAAAAA
AAAAAAAAAAAAA

LD13050.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
dM6a-RB 2238 dM6a-RB 38..1985 1..1948 9740 100 Plus
dM6a.f 2020 dM6a.f 76..2020 1..1945 9725 100 Plus
dM6a.e 2427 dM6a.e 432..2193 187..1948 8810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21500605..21501684 866..1945 5400 100 Plus
chr3L 24539361 chr3L 21498816..21499216 1..401 2005 100 Plus
chr3L 24539361 chr3L 21500243..21500548 560..865 1530 100 Plus
chr3L 24539361 chr3L 21500024..21500186 399..561 815 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511670..21512752 866..1948 5415 100 Plus
3L 28110227 3L 21509881..21510281 1..401 2005 100 Plus
3L 28110227 3L 21511308..21511613 560..865 1530 100 Plus
3L 28110227 3L 21511089..21511251 399..561 815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21504770..21505852 866..1948 5415 100 Plus
3L 28103327 3L 21502981..21503381 1..401 2005 100 Plus
3L 28103327 3L 21504408..21504713 560..865 1530 100 Plus
3L 28103327 3L 21504189..21504351 399..561 815 100 Plus
Blast to na_te.dros performed 2019-03-16 04:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 2567..2689 1913..1793 150 62.4 Minus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2316..2484 1932..1765 146 59.3 Minus
roo 9092 roo DM_ROO 9092bp 8255..8333 1832..1914 116 65.1 Plus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 86..152 1319..1255 113 67.2 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 2867..2933 1319..1255 113 67.2 Minus

LD13050.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:04:45 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21498816..21499215 1..400 100 -> Plus
chr3L 21500026..21500185 401..560 100 -> Plus
chr3L 21500244..21500548 561..865 100 -> Plus
chr3L 21500605..21501684 866..1945 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:05 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..945 199..1143 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:47 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..945 199..1143 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RC 1..960 186..1143 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:20 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..945 199..1143 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:49 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RC 1..960 186..1143 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:45 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..1143 1..1143 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:47 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:20 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..1143 1..1143 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:49 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..1945 1..1945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:45 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21509881..21510280 1..400 100 -> Plus
3L 21511091..21511250 401..560 100 -> Plus
3L 21511309..21511613 561..865 100 -> Plus
3L 21511670..21512749 866..1945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:45 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21509881..21510280 1..400 100 -> Plus
3L 21511091..21511250 401..560 100 -> Plus
3L 21511309..21511613 561..865 100 -> Plus
3L 21511670..21512749 866..1945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:45 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21509881..21510280 1..400 100 -> Plus
3L 21511091..21511250 401..560 100 -> Plus
3L 21511309..21511613 561..865 100 -> Plus
3L 21511670..21512749 866..1945 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:35 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21504409..21504713 561..865 100 -> Plus
arm_3L 21502981..21503380 1..400 100 -> Plus
arm_3L 21504191..21504350 401..560 100 -> Plus
arm_3L 21504770..21505849 866..1945 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:27 Download gff for LD13050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21502981..21503380 1..400 100 -> Plus
3L 21504191..21504350 401..560 100 -> Plus
3L 21504409..21504713 561..865 100 -> Plus
3L 21504770..21505849 866..1945 100   Plus

LD13050.hyp Sequence

Translation from 198 to 1142

> LD13050.hyp
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRF*

LD13050.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
M6-PB 314 CG7540-PB 1..314 1..314 1659 100 Plus
M6-PC 319 CG7540-PC 6..319 1..314 1659 100 Plus
M6-PF 368 CG7540-PF 55..368 1..314 1659 100 Plus
M6-PE 297 CG7540-PE 44..297 61..314 1305 98 Plus
M6-PD 248 CG7540-PD 2..248 68..314 1295 100 Plus

LD13050.pep Sequence

Translation from 198 to 1142

> LD13050.pep
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRF*

LD13050.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23719-PA 317 GF23719-PA 1..317 1..314 1639 96.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16192-PA 314 GG16192-PA 1..314 1..314 1681 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16745-PA 311 GH16745-PA 1..311 1..314 1552 92.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
M6-PF 368 CG7540-PF 55..368 1..314 1659 100 Plus
M6-PC 319 CG7540-PC 6..319 1..314 1659 100 Plus
M6-PB 314 CG7540-PB 1..314 1..314 1659 100 Plus
M6-PE 297 CG7540-PE 44..297 61..314 1305 98 Plus
M6-PD 248 CG7540-PD 2..248 68..314 1295 100 Plus
M6-PG 187 CG7540-PG 2..180 68..240 817 89.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13470-PA 312 GI13470-PA 1..312 1..314 1566 93 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11885-PA 315 GL11885-PA 1..315 1..314 1574 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20425-PA 315 GA20425-PA 1..315 1..314 1574 95.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22375-PA 314 GM22375-PA 1..314 1..314 1684 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14966-PA 314 GD14966-PA 1..314 1..314 1692 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11833-PA 312 GJ11833-PA 1..312 1..314 1561 92.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20404-PA 322 GK20404-PA 1..322 1..314 1557 92.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19763-PA 314 GE19763-PA 1..314 1..314 1681 99.4 Plus
Dyak\GE23265-PA 314 GE23265-PA 1..314 1..314 1681 99.4 Plus