BDGP Sequence Production Resources |
Search the DGRC for LD13050
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 130 |
Well: | 50 |
Vector: | pBS SK- |
Associated Gene/Transcript | M6-RB |
Protein status: | LD13050.pep: gold |
Preliminary Size: | 2000 |
Sequenced Size: | 1963 |
Gene | Date | Evidence |
---|---|---|
CG7540 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7540 | 2003-07-26 | Blastp of sequenced clone |
M6 | 2008-04-29 | Release 5.5 accounting |
M6 | 2008-08-15 | Release 5.9 accounting |
M6 | 2008-12-18 | 5.12 accounting |
1963 bp (1963 high quality bases) assembled on 2003-07-26
GenBank Submission: BT010069
> LD13050.complete ATTCGTTGCTCGGTGGTTATTGCTATAAACCCTAATTATAATTATTGGGA GGCCTCTTGATTGGGTGACGTCGTCGGTGTGCGTGTGATTCACTGTGTGC CGTTTAGCTTGGGCTAGCCCAACTTCAGCTCCAGCTACGTTCCGTAACTA AGGTCTTTGTATAAATTCCGACTTCGACTCCATAAAGCGTTGTGCAGTAT GCCGGGCAAGGGGAACAACCGCGATCGCATCCGGGATCCCCGCGAGGAGA TCCTGCTCGAGACGAACTTTGAGGACGACGGCGGAGTCCTGACGCGCGCC TACAACGGAAATCCGTATAACCCGACCATCCAGAACCGTCGGCGCAACTC GTACCGCTCGGATCACTCCTTGGACAGGTACACGGAGCGCGGAGGCGAAG GAGAATGCTGCCAATCCTGCATGGCGCGTATTCCCTACGCCACCCTGATA GCCACTCTGATGTGTCTCCTGGGAGTAGGAATCTTCTGCTTCACCATGTA CCGAGGAGCCTCTCTCACCGTTATAATGGTTGACCAGGTTTTCCACCTAC GCCTGATATGGATCGAAGCTGTGCAAATGATTTTCGTAATAATTGGAGCG GGCATGGCCGCCCTCGGATTTATGATCCTGTTCGTCGGATTTCTGGCCAC CGGAGCCACCAGATACAAGGTTTACCGGGCGTGGCGGTCGCGAGTGGGTG GGCGAATCTCGTGCGCCGTCCTTATGGGGATAACCTACCTGCTAAACTTT GTGTGGAGTCTGATCCTTTGTTTCCTGGTAGTGGTTACCTTCATCTACAC CATGTTCTGGAACATGTGCACCAGTGTTGAGCACTCTCAAAGCTGCATTG ATCTGACGCAATTCCATTTTATGTTCCCGCCAAACACGAAACTGGAGGAC ATGAAGGTCTGCGAAAAGTACGAGATAAAGGCATTCTGCAAAGACGGTGT TGAGAACGCCGAGGTGATGTTTATATTGGCCACTCTGTCCACCCTTTTGG TGCTGCTCAGTCTGGTCCACTACCTGATGTGCCTGTCTGCTAACTACGCC CACATTCGGGACCACGAAAAGTTCCAGGAGCTACAGGAGATCCAGAACCT GAACGAGCTGGAGTACAGTGCCACCTCGAAGGATCGCTTCTAGGACATAT TTCAGAAGATTCAGTTTGAGCTTAAGGACAAGTCTAGCGCTCTTTGAGCG ATTTACGCACAATACAACGAACAGTGAACCACCTTCCAACGAAACCCAAC ATGCTATAGTTTAGATTTTTCATTTAGACCTAAGATTTATGTTGAGTTTT CAGTTTTGCTAGTTCATTTAATGAGTTGGTCGCTTTGACTGTTTATCGTT TTATTAGTTGAGCAGTTGCACCATGTTTAAACTGCCAAATCAAATGTTAC ACTGAAATTATGCTTCTTATCTACTGTACTGTTCCACTGACTTTTTTCTT CCGTCCATTGACTTAAGTTAGTTTACATTTATTATTTTTGCGTTTTTTAT TACATTGCAATCAATAAATCCATGCCAACACAATAGTCAGGTGCTTATGC TCAAATTGATTCTTCTGAATTGCCGAATGCATTTTATTAATATACGGATA GTTAATCGCCACTTATTATTATTACATAGTGTAATCCATCCGTGCATGAT TGTCTTTAAAATCTGTACAAGAAATTACTTTTAATGTGTATATTTCACTA TTGCATCTACAACTTTGAAGCAATACGAATCCTGCCGTAGTAATTTGTAA ATGCGGTAGCATCAGTTTAGTAAGGCAATGTTAGTCTAAAGATTTTACTA AGTATAAAAGTATAAATTTATTTATCTCGTATTTAATATATAAACGTACG TAACAATAATATATTTTATACTAAAATTTTCTAACCTCACACTTATACAA AAAGTATAAACTTTTGAAAATCAAATAAAGAACTTGAGGTAAAGCAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21500605..21501684 | 866..1945 | 5400 | 100 | Plus |
chr3L | 24539361 | chr3L | 21498816..21499216 | 1..401 | 2005 | 100 | Plus |
chr3L | 24539361 | chr3L | 21500243..21500548 | 560..865 | 1530 | 100 | Plus |
chr3L | 24539361 | chr3L | 21500024..21500186 | 399..561 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21511670..21512752 | 866..1948 | 5415 | 100 | Plus |
3L | 28110227 | 3L | 21509881..21510281 | 1..401 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 21511308..21511613 | 560..865 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 21511089..21511251 | 399..561 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21504770..21505852 | 866..1948 | 5415 | 100 | Plus |
3L | 28103327 | 3L | 21502981..21503381 | 1..401 | 2005 | 100 | Plus |
3L | 28103327 | 3L | 21504408..21504713 | 560..865 | 1530 | 100 | Plus |
3L | 28103327 | 3L | 21504189..21504351 | 399..561 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib3 | 2883 | transib3 TRANSIB3 2883bp | 2567..2689 | 1913..1793 | 150 | 62.4 | Minus |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2316..2484 | 1932..1765 | 146 | 59.3 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 8255..8333 | 1832..1914 | 116 | 65.1 | Plus |
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 86..152 | 1319..1255 | 113 | 67.2 | Minus |
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 2867..2933 | 1319..1255 | 113 | 67.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21498816..21499215 | 1..400 | 100 | -> | Plus |
chr3L | 21500026..21500185 | 401..560 | 100 | -> | Plus |
chr3L | 21500244..21500548 | 561..865 | 100 | -> | Plus |
chr3L | 21500605..21501684 | 866..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..945 | 199..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..945 | 199..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RC | 1..960 | 186..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..945 | 199..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RC | 1..960 | 186..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..1143 | 1..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..1945 | 1..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..1945 | 1..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..1143 | 1..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M6-RB | 1..1945 | 1..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21509881..21510280 | 1..400 | 100 | -> | Plus |
3L | 21511091..21511250 | 401..560 | 100 | -> | Plus |
3L | 21511309..21511613 | 561..865 | 100 | -> | Plus |
3L | 21511670..21512749 | 866..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21509881..21510280 | 1..400 | 100 | -> | Plus |
3L | 21511091..21511250 | 401..560 | 100 | -> | Plus |
3L | 21511309..21511613 | 561..865 | 100 | -> | Plus |
3L | 21511670..21512749 | 866..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21509881..21510280 | 1..400 | 100 | -> | Plus |
3L | 21511091..21511250 | 401..560 | 100 | -> | Plus |
3L | 21511309..21511613 | 561..865 | 100 | -> | Plus |
3L | 21511670..21512749 | 866..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21504409..21504713 | 561..865 | 100 | -> | Plus |
arm_3L | 21502981..21503380 | 1..400 | 100 | -> | Plus |
arm_3L | 21504191..21504350 | 401..560 | 100 | -> | Plus |
arm_3L | 21504770..21505849 | 866..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21502981..21503380 | 1..400 | 100 | -> | Plus |
3L | 21504191..21504350 | 401..560 | 100 | -> | Plus |
3L | 21504409..21504713 | 561..865 | 100 | -> | Plus |
3L | 21504770..21505849 | 866..1945 | 100 | Plus |
Translation from 198 to 1142
> LD13050.hyp MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN LNELEYSATSKDRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
M6-PB | 314 | CG7540-PB | 1..314 | 1..314 | 1659 | 100 | Plus |
M6-PC | 319 | CG7540-PC | 6..319 | 1..314 | 1659 | 100 | Plus |
M6-PF | 368 | CG7540-PF | 55..368 | 1..314 | 1659 | 100 | Plus |
M6-PE | 297 | CG7540-PE | 44..297 | 61..314 | 1305 | 98 | Plus |
M6-PD | 248 | CG7540-PD | 2..248 | 68..314 | 1295 | 100 | Plus |
Translation from 198 to 1142
> LD13050.pep MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN LNELEYSATSKDRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23719-PA | 317 | GF23719-PA | 1..317 | 1..314 | 1639 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16192-PA | 314 | GG16192-PA | 1..314 | 1..314 | 1681 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16745-PA | 311 | GH16745-PA | 1..311 | 1..314 | 1552 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
M6-PF | 368 | CG7540-PF | 55..368 | 1..314 | 1659 | 100 | Plus |
M6-PC | 319 | CG7540-PC | 6..319 | 1..314 | 1659 | 100 | Plus |
M6-PB | 314 | CG7540-PB | 1..314 | 1..314 | 1659 | 100 | Plus |
M6-PE | 297 | CG7540-PE | 44..297 | 61..314 | 1305 | 98 | Plus |
M6-PD | 248 | CG7540-PD | 2..248 | 68..314 | 1295 | 100 | Plus |
M6-PG | 187 | CG7540-PG | 2..180 | 68..240 | 817 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13470-PA | 312 | GI13470-PA | 1..312 | 1..314 | 1566 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11885-PA | 315 | GL11885-PA | 1..315 | 1..314 | 1574 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20425-PA | 315 | GA20425-PA | 1..315 | 1..314 | 1574 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22375-PA | 314 | GM22375-PA | 1..314 | 1..314 | 1684 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14966-PA | 314 | GD14966-PA | 1..314 | 1..314 | 1692 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11833-PA | 312 | GJ11833-PA | 1..312 | 1..314 | 1561 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20404-PA | 322 | GK20404-PA | 1..322 | 1..314 | 1557 | 92.9 | Plus |