Clone LD13195 Report

Search the DGRC for LD13195

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:131
Well:95
Vector:pBS SK-
Associated Gene/TranscriptMapmodulin-RA
Protein status:LD13195.pep: gold
Preliminary Size:1424
Sequenced Size:1295

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5784 2001-01-01 Release 2 assignment
CG5784 2002-05-30 Blastp of sequenced clone
CG5784 2003-01-01 Sim4 clustering to Release 3
Mapmodulin 2008-04-29 Release 5.5 accounting
Mapmodulin 2008-08-15 Release 5.9 accounting
Mapmodulin 2008-12-18 5.12 accounting

Clone Sequence Records

LD13195.complete Sequence

1295 bp (1295 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118324

> LD13195.complete
AGGTATCGAACAATCATCAACTGAAGTGCCAGCTCTAGCGTTTTGCTTTG
GTTGAAAATACAATTAAAAATTGATTCTGAAGTATTTAAATATTCTGCAT
CGCCAGCCATAAAAATCTGCGAAAACCAAACGGTGGCGGCATCGAAAATA
CCGAAAGAAGCACAAAAAGAAAAATTTGCAAGGCTGCGTCTGTGTTAGTG
AGCGTGCGCTGTTTCTCGTGTGGAGCCCAAAGGAAGAAAAACACACAAAA
ATACAAGGAATCCGCTAAGGAAAAAAGCGTAACCAAAAAGAACATCCAAA
ACAAACAAGTGCCGCTGCAATGGAGAAGAGAATAGAACTGGAAAGACGCG
CACGCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGT
ACAAGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAG
CTTGATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCA
ATTTAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAAC
TATCTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAA
GATAAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGG
TTGTTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGC
GAGAAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGA
TTGCAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCA
ACGGCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGC
GATGATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTA
CAATGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGG
CTGGCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGT
GATGCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGA
AAAGGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATG
GTTAAAACCCTGATCTGTCGGTATAGCGTCTTTGTACGTTATAAATTTAA
ATATACACCCACACACAAAACAAAAACACACACACACATCATATTTTGAT
AGAAAAAGATGATAAATCCTTTAGGAAACCCACAATTTGTTTCTCTAAAA
TGTAAGCTAATGAAAGAAGAAATCGACAAAAAAAAAAAAAAAAAA

LD13195.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2470 Mapmodulin-RA 535..1622 202..1289 5425 99.9 Plus
Mapmodulin.b 2937 Mapmodulin.b 1002..2089 202..1289 5425 99.9 Plus
Mapmodulin.a 2500 Mapmodulin.a 274..899 202..827 3130 100 Plus
Mapmodulin.a 2500 Mapmodulin.a 1206..1667 828..1289 2295 99.7 Plus
Mapmodulin-RA 2470 Mapmodulin-RA 262..467 1..206 1030 100 Plus
Mapmodulin.b 2937 Mapmodulin.b 729..934 1..206 1030 100 Plus
Mapmodulin.a 2500 Mapmodulin.a 1..206 1..206 1030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13755631..13756009 744..366 1865 99.5 Minus
chr2R 21145070 chr2R 13754524..13754759 1061..826 1165 99.6 Minus
chr2R 21145070 chr2R 13754228..13754446 1277..1059 1065 99.1 Minus
chr2R 21145070 chr2R 13758528..13758693 367..202 830 100 Minus
chr2R 21145070 chr2R 13759106..13759211 106..1 530 100 Minus
chr2R 21145070 chr2R 13758763..13758864 206..105 510 100 Minus
chr2R 21145070 chr2R 13755486..13755569 827..744 405 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 744..366 1895 100 Minus
2R 25286936 2R 17867326..17867561 1061..826 1180 100 Minus
2R 25286936 2R 17867026..17867256 1289..1059 1140 99.6 Minus
2R 25286936 2R 17871329..17871494 367..202 830 100 Minus
2R 25286936 2R 17871905..17872010 106..1 530 100 Minus
2R 25286936 2R 17871562..17871663 206..105 510 100 Minus
2R 25286936 2R 17868287..17868370 827..744 420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17869631..17870009 744..366 1895 100 Minus
2R 25260384 2R 17868525..17868760 1061..826 1180 100 Minus
2R 25260384 2R 17868225..17868455 1289..1059 1140 99.5 Minus
2R 25260384 2R 17872528..17872693 367..202 830 100 Minus
2R 25260384 2R 17873104..17873209 106..1 530 100 Minus
2R 25260384 2R 17872761..17872862 206..105 510 100 Minus
2R 25260384 2R 17869486..17869569 827..744 420 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:15:24 has no hits.

LD13195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:15 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13754228..13754443 1062..1277 99 <- Minus
chr2R 13754524..13754757 828..1061 99 <- Minus
chr2R 13755486..13755568 745..827 98 <- Minus
chr2R 13755631..13756007 368..744 99 <- Minus
chr2R 13758528..13758708 183..367 94 <- Minus
chr2R 13758787..13758862 107..182 100 <- Minus
chr2R 13759106..13759211 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:23 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 1..786 320..1105 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:09 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 1..786 320..1105 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:41 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 1..786 320..1105 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:46 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 1..786 320..1105 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:40 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 1..786 320..1105 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:31 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 1..1280 1..1277 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:09 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 1..1280 1..1277 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:41 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 6..1285 1..1277 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:46 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 1..1280 1..1277 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:40 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 6..1285 1..1277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:15 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17871329..17871495 204..367 98 <- Minus
2R 17871565..17871661 107..203 100 <- Minus
2R 17871905..17872010 1..106 100   Minus
2R 17868432..17868808 368..744 100 <- Minus
2R 17867038..17867253 1062..1277 100 <- Minus
2R 17867326..17867559 828..1061 100 <- Minus
2R 17868287..17868369 745..827 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:15 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17871329..17871495 204..367 98 <- Minus
2R 17871565..17871661 107..203 100 <- Minus
2R 17871905..17872010 1..106 100   Minus
2R 17868432..17868808 368..744 100 <- Minus
2R 17867038..17867253 1062..1277 100 <- Minus
2R 17867326..17867559 828..1061 100 <- Minus
2R 17868287..17868369 745..827 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:15 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17871329..17871495 204..367 98 <- Minus
2R 17871565..17871661 107..203 100 <- Minus
2R 17871905..17872010 1..106 100   Minus
2R 17868432..17868808 368..744 100 <- Minus
2R 17867038..17867253 1062..1277 100 <- Minus
2R 17867326..17867559 828..1061 100 <- Minus
2R 17868287..17868369 745..827 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:41 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754543..13754758 1062..1277 100 <- Minus
arm_2R 13754831..13755064 828..1061 100 <- Minus
arm_2R 13755792..13755874 745..827 100 <- Minus
arm_2R 13755937..13756313 368..744 100 <- Minus
arm_2R 13758834..13759000 204..367 98 <- Minus
arm_2R 13759070..13759166 107..203 100 <- Minus
arm_2R 13759410..13759515 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:20 Download gff for LD13195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17872528..17872694 204..367 98 <- Minus
2R 17872764..17872860 107..203 100 <- Minus
2R 17873104..17873209 1..106 100   Minus
2R 17868237..17868452 1062..1277 100 <- Minus
2R 17868525..17868758 828..1061 100 <- Minus
2R 17869486..17869568 745..827 100 <- Minus
2R 17869631..17870007 368..744 100 <- Minus

LD13195.pep Sequence

Translation from 319 to 1104

> LD13195.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDG*

LD13195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13217-PA 366 GF13217-PA 1..167 1..167 835 95.2 Plus
Dana\GF13217-PA 366 GF13217-PA 291..366 185..261 197 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21011-PA 260 GG21011-PA 1..260 1..261 1075 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21742-PA 261 GH21742-PA 1..261 1..261 1008 88.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PA 261 CG5784-PA 1..261 1..261 1342 100 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..261 1342 100 Plus
Mapmodulin-PD 363 CG5784-PD 1..363 1..261 888 57.3 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..261 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 852..968 146..260 192 34.2 Plus
l(2)01289-PM 1193 CG9432-PM 852..968 146..260 192 34.2 Plus
l(2)01289-PG 1191 CG9432-PG 796..915 144..261 177 31.7 Plus
l(2)01289-PM 1193 CG9432-PM 796..915 144..261 177 31.7 Plus
l(2)01289-PG 1191 CG9432-PG 765..851 141..250 173 39.1 Plus
l(2)01289-PM 1193 CG9432-PM 765..851 141..250 173 39.1 Plus
l(2)01289-PG 1191 CG9432-PG 823..940 147..260 168 33.9 Plus
l(2)01289-PM 1193 CG9432-PM 823..940 147..260 168 33.9 Plus
l(2)01289-PG 1191 CG9432-PG 796..916 141..260 165 30.6 Plus
l(2)01289-PM 1193 CG9432-PM 796..916 141..260 165 30.6 Plus
l(2)01289-PG 1191 CG9432-PG 871..983 146..257 164 31.9 Plus
l(2)01289-PM 1193 CG9432-PM 871..983 146..257 164 31.9 Plus
l(2)01289-PG 1191 CG9432-PG 730..824 155..251 158 34.3 Plus
l(2)01289-PG 1191 CG9432-PG 810..929 141..260 158 33.1 Plus
l(2)01289-PM 1193 CG9432-PM 730..824 155..251 158 34.3 Plus
l(2)01289-PM 1193 CG9432-PM 810..929 141..260 158 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19290-PA 372 GI19290-PA 1..172 1..177 823 90.4 Plus
Dmoj\GI19290-PA 372 GI19290-PA 296..372 185..261 173 73.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17265-PA 263 GL17265-PA 1..263 1..261 978 81.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19125-PA 263 GA19125-PA 1..263 1..261 978 81.5 Plus
Dpse\GA19125-PB 292 GA19125-PB 1..292 1..261 952 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19943-PA 262 GM19943-PA 1..262 1..261 1278 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25433-PA 262 GD25433-PA 1..262 1..261 1278 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22166-PA 258 GJ22166-PA 1..258 1..261 989 83.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22070-PA 259 GK22070-PA 1..259 1..261 978 82.5 Plus
Dwil\GK22069-PA 767 GK22069-PA 1..165 1..167 799 92.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13954-PA 263 GE13954-PA 1..263 1..261 1065 93.9 Plus

LD13195.hyp Sequence

Translation from 319 to 1104

> LD13195.hyp
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDG*

LD13195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PA 261 CG5784-PA 1..261 1..261 1342 100 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..261 1342 100 Plus
Mapmodulin-PD 363 CG5784-PD 1..363 1..261 888 57.3 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..261 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 852..968 146..260 192 34.2 Plus