BDGP Sequence Production Resources |
Search the DGRC for LD13390
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 133 |
Well: | 90 |
Vector: | pBS SK- |
Associated Gene/Transcript | pyd3-RA |
Protein status: | LD13390.pep: gold |
Preliminary Size: | 1531 |
Sequenced Size: | 1353 |
Gene | Date | Evidence |
---|---|---|
CG3027 | 2001-01-01 | Release 2 assignment |
CG3027 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3027 | 2003-03-27 | Blastp of sequenced clone |
pyd3 | 2008-04-29 | Release 5.5 accounting |
pyd3 | 2008-08-15 | Release 5.9 accounting |
pyd3 | 2008-12-18 | 5.12 accounting |
1353 bp (1353 high quality bases) assembled on 2003-03-27
GenBank Submission: BT011121
> LD13390.complete GAGAAGGTTGTTCTATCAATTGAGTCCGATAATTGATGAGATATTTTGTT GCTGTAAAATTGGAAAAATGTCAGCATTTGAACTGAAAAATTTAAATGAT TGCTTGGAAAAGCATTTACCACCCGATGAACTAAAGGAGGTTAAGAGAAT TTTGTACGGCGTAGAAGAAGATCAAACGCTTGAGCTGCCCACAAGTGCGA AAGATATTGCCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACG GCGCGAGAGGAGCAAACTCGCAAGCGCCGGATAGTCAGAGTTGGCGCCAT CCAAAACTCTATCGTAATCCCTACTACGGCGCCCATTGAAAAACAACGAG AGGCCATCTGGAACAAAGTGAAGACTATGATCAAGGCGGCAGCGGAAGCC GGATGCAACATTGTTTGCACCCAAGAAGCGTGGACCATGCCCTTTGCCTT CTGCACTCGCGAGAAGTTTCCTTGGTGTGAGTTTGCCGAAGAAGCCGAAA ACGGTCCCACAACCAAGATGCTCGCAGAGCTGGCCAAGGCTTACAACATG GTTATCATCCACTCGATTCTGGAGCGAGATATGGAGCATGGCGAGACCAT TTGGAATACGGCAGTGGTCATCTCGAACAGTGGTCGCTACCTGGGCAAGC ACCGCAAGAACCACATTCCCCGGGTGGGTGACTTCAATGAGTCCACCTAC TACATGGAGGGGAACACCGGTCATCCGGTTTTCGAGACGGAGTTCGGCAA GCTGGCTGTGAACATATGCTACGGGCGCCATCACCCACAGAACTGGATGA TGTTCGGTCTGAATGGAGCCGAGATTGTCTTTAATCCCTCGGCTACGATC GGCCGCCTATCGGAGCCATTGTGGAGCATTGAGGCACGTAACGCTGCCAT CGCCAATAGCTACTTTACGGTTCCGATTAATCGCGTGGGAACCGAGCAGT TCCCGAACGAATACACATCTGGTGATGGCAACAAGGCGCATAAGGAGTTT GGTCCCTTCTACGGATCTTCTTATGTCGCAGCTCCTGACGGCTCAAGGAC ACCGAGCTTATCGCGGGACAAAGACGGCTTGCTTGTCGTTGAACTCGATC TGAACCTGTGTCGCCAGGTGAAGGACTTCTGGGGCTTCCGCATGACGCAG AGAGTTCCGCTGTATGCGGAGTCCTTCAAAAAGGCATCCGAACATGGCTT CAAGCCGCAGATCATCAAGGAAACATAAGAGAAAAGAGTATTTTACGATT GACTTTGTTGATTAGCGGAATTGATTTTGAAGAAAATTGCATTTTGATTT GGACTTTAAATAAAGATAAGCTCATTTTAACACATAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pyd3-RA | 1439 | pyd3-RA | 26..1361 | 1..1336 | 6680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 3574314..3574933 | 1054..435 | 3100 | 100 | Minus |
chr3R | 27901430 | chr3R | 3573973..3574254 | 1335..1054 | 1410 | 100 | Minus |
chr3R | 27901430 | chr3R | 3575010..3575272 | 434..172 | 1315 | 100 | Minus |
chr3R | 27901430 | chr3R | 3575943..3576113 | 171..1 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7748254..7748873 | 1054..435 | 3100 | 100 | Minus |
3R | 32079331 | 3R | 7747912..7748194 | 1336..1054 | 1415 | 100 | Minus |
3R | 32079331 | 3R | 7748950..7749212 | 434..172 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 7749883..7750053 | 171..1 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 7489085..7489704 | 1054..435 | 3100 | 100 | Minus |
3R | 31820162 | 3R | 7488743..7489025 | 1336..1054 | 1415 | 100 | Minus |
3R | 31820162 | 3R | 7489781..7490043 | 434..172 | 1315 | 100 | Minus |
3R | 31820162 | 3R | 7490714..7490884 | 171..1 | 855 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3575943..3576113 | 1..171 | 100 | Minus | |
chr3R | 3573973..3574253 | 1055..1335 | 100 | <- | Minus |
chr3R | 3574314..3574933 | 435..1054 | 100 | <- | Minus |
chr3R | 3575010..3575272 | 172..434 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 1..1161 | 68..1228 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 1..1161 | 68..1228 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 1..1161 | 68..1228 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 1..1161 | 68..1228 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 1..1161 | 68..1228 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 24..1358 | 1..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 24..1358 | 1..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 27..1361 | 1..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 24..1358 | 1..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyd3-RA | 27..1361 | 1..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7747913..7748193 | 1055..1335 | 100 | <- | Minus |
3R | 7748254..7748873 | 435..1054 | 100 | <- | Minus |
3R | 7748950..7749212 | 172..434 | 100 | <- | Minus |
3R | 7749883..7750053 | 1..171 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7747913..7748193 | 1055..1335 | 100 | <- | Minus |
3R | 7748254..7748873 | 435..1054 | 100 | <- | Minus |
3R | 7748950..7749212 | 172..434 | 100 | <- | Minus |
3R | 7749883..7750053 | 1..171 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7747913..7748193 | 1055..1335 | 100 | <- | Minus |
3R | 7748254..7748873 | 435..1054 | 100 | <- | Minus |
3R | 7748950..7749212 | 172..434 | 100 | <- | Minus |
3R | 7749883..7750053 | 1..171 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3573635..3573915 | 1055..1335 | 100 | <- | Minus |
arm_3R | 3573976..3574595 | 435..1054 | 100 | <- | Minus |
arm_3R | 3574672..3574934 | 172..434 | 100 | <- | Minus |
arm_3R | 3575605..3575775 | 1..171 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7488744..7489024 | 1055..1335 | 100 | <- | Minus |
3R | 7489085..7489704 | 435..1054 | 100 | <- | Minus |
3R | 7489781..7490043 | 172..434 | 100 | <- | Minus |
3R | 7490714..7490884 | 1..171 | 100 | Minus |
Translation from 0 to 1227
> LD13390.hyp RRLFYQLSPIIDEIFCCCKIGKMSAFELKNLNDCLEKHLPPDELKEVKRI LYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAI QNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETI WNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGK LAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAI ANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRT PSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGF KPQIIKET*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pyd3-PA | 386 | CG3027-PA | 1..386 | 23..408 | 2057 | 100 | Plus |
Translation from 67 to 1227
> LD13390.pep MSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQ NGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNK VKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHI PRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNG AEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYT SGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQ VKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17288-PA | 386 | GF17288-PA | 1..386 | 1..386 | 1960 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25017-PA | 386 | GG25017-PA | 1..386 | 1..386 | 2022 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21956-PA | 386 | GH21956-PA | 1..385 | 1..385 | 1854 | 87.5 | Plus |
Dgri\GH19038-PA | 283 | GH19038-PA | 25..281 | 97..371 | 151 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pyd3-PA | 386 | CG3027-PA | 1..386 | 1..386 | 2057 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19662-PA | 386 | GI19662-PA | 1..385 | 1..385 | 1841 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17748-PA | 146 | GL17748-PA | 43..130 | 36..123 | 369 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10462-PA | 386 | GM10462-PA | 1..386 | 1..386 | 2087 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19466-PA | 386 | GD19466-PA | 1..386 | 1..386 | 2082 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15027-PA | 385 | GJ15027-PA | 1..385 | 1..385 | 1881 | 88.3 | Plus |