Clone LD13390 Report

Search the DGRC for LD13390

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:133
Well:90
Vector:pBS SK-
Associated Gene/Transcriptpyd3-RA
Protein status:LD13390.pep: gold
Preliminary Size:1531
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3027 2001-01-01 Release 2 assignment
CG3027 2003-01-01 Sim4 clustering to Release 3
CG3027 2003-03-27 Blastp of sequenced clone
pyd3 2008-04-29 Release 5.5 accounting
pyd3 2008-08-15 Release 5.9 accounting
pyd3 2008-12-18 5.12 accounting

Clone Sequence Records

LD13390.complete Sequence

1353 bp (1353 high quality bases) assembled on 2003-03-27

GenBank Submission: BT011121

> LD13390.complete
GAGAAGGTTGTTCTATCAATTGAGTCCGATAATTGATGAGATATTTTGTT
GCTGTAAAATTGGAAAAATGTCAGCATTTGAACTGAAAAATTTAAATGAT
TGCTTGGAAAAGCATTTACCACCCGATGAACTAAAGGAGGTTAAGAGAAT
TTTGTACGGCGTAGAAGAAGATCAAACGCTTGAGCTGCCCACAAGTGCGA
AAGATATTGCCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACG
GCGCGAGAGGAGCAAACTCGCAAGCGCCGGATAGTCAGAGTTGGCGCCAT
CCAAAACTCTATCGTAATCCCTACTACGGCGCCCATTGAAAAACAACGAG
AGGCCATCTGGAACAAAGTGAAGACTATGATCAAGGCGGCAGCGGAAGCC
GGATGCAACATTGTTTGCACCCAAGAAGCGTGGACCATGCCCTTTGCCTT
CTGCACTCGCGAGAAGTTTCCTTGGTGTGAGTTTGCCGAAGAAGCCGAAA
ACGGTCCCACAACCAAGATGCTCGCAGAGCTGGCCAAGGCTTACAACATG
GTTATCATCCACTCGATTCTGGAGCGAGATATGGAGCATGGCGAGACCAT
TTGGAATACGGCAGTGGTCATCTCGAACAGTGGTCGCTACCTGGGCAAGC
ACCGCAAGAACCACATTCCCCGGGTGGGTGACTTCAATGAGTCCACCTAC
TACATGGAGGGGAACACCGGTCATCCGGTTTTCGAGACGGAGTTCGGCAA
GCTGGCTGTGAACATATGCTACGGGCGCCATCACCCACAGAACTGGATGA
TGTTCGGTCTGAATGGAGCCGAGATTGTCTTTAATCCCTCGGCTACGATC
GGCCGCCTATCGGAGCCATTGTGGAGCATTGAGGCACGTAACGCTGCCAT
CGCCAATAGCTACTTTACGGTTCCGATTAATCGCGTGGGAACCGAGCAGT
TCCCGAACGAATACACATCTGGTGATGGCAACAAGGCGCATAAGGAGTTT
GGTCCCTTCTACGGATCTTCTTATGTCGCAGCTCCTGACGGCTCAAGGAC
ACCGAGCTTATCGCGGGACAAAGACGGCTTGCTTGTCGTTGAACTCGATC
TGAACCTGTGTCGCCAGGTGAAGGACTTCTGGGGCTTCCGCATGACGCAG
AGAGTTCCGCTGTATGCGGAGTCCTTCAAAAAGGCATCCGAACATGGCTT
CAAGCCGCAGATCATCAAGGAAACATAAGAGAAAAGAGTATTTTACGATT
GACTTTGTTGATTAGCGGAATTGATTTTGAAGAAAATTGCATTTTGATTT
GGACTTTAAATAAAGATAAGCTCATTTTAACACATAAAAAAAAAAAAAAA
AAA

LD13390.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
pyd3-RA 1439 pyd3-RA 26..1361 1..1336 6680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3574314..3574933 1054..435 3100 100 Minus
chr3R 27901430 chr3R 3573973..3574254 1335..1054 1410 100 Minus
chr3R 27901430 chr3R 3575010..3575272 434..172 1315 100 Minus
chr3R 27901430 chr3R 3575943..3576113 171..1 855 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7748254..7748873 1054..435 3100 100 Minus
3R 32079331 3R 7747912..7748194 1336..1054 1415 100 Minus
3R 32079331 3R 7748950..7749212 434..172 1315 100 Minus
3R 32079331 3R 7749883..7750053 171..1 855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7489085..7489704 1054..435 3100 100 Minus
3R 31820162 3R 7488743..7489025 1336..1054 1415 100 Minus
3R 31820162 3R 7489781..7490043 434..172 1315 100 Minus
3R 31820162 3R 7490714..7490884 171..1 855 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:14:07 has no hits.

LD13390.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:15:02 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3575943..3576113 1..171 100   Minus
chr3R 3573973..3574253 1055..1335 100 <- Minus
chr3R 3574314..3574933 435..1054 100 <- Minus
chr3R 3575010..3575272 172..434 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:33 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 1..1161 68..1228 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:48 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 1..1161 68..1228 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:11 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 1..1161 68..1228 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:14 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 1..1161 68..1228 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:55 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 1..1161 68..1228 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:56:59 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 24..1358 1..1335 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:48 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 24..1358 1..1335 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:11 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 27..1361 1..1335 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:14 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 24..1358 1..1335 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:55 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
pyd3-RA 27..1361 1..1335 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:02 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7747913..7748193 1055..1335 100 <- Minus
3R 7748254..7748873 435..1054 100 <- Minus
3R 7748950..7749212 172..434 100 <- Minus
3R 7749883..7750053 1..171 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:02 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7747913..7748193 1055..1335 100 <- Minus
3R 7748254..7748873 435..1054 100 <- Minus
3R 7748950..7749212 172..434 100 <- Minus
3R 7749883..7750053 1..171 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:02 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7747913..7748193 1055..1335 100 <- Minus
3R 7748254..7748873 435..1054 100 <- Minus
3R 7748950..7749212 172..434 100 <- Minus
3R 7749883..7750053 1..171 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:11 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3573635..3573915 1055..1335 100 <- Minus
arm_3R 3573976..3574595 435..1054 100 <- Minus
arm_3R 3574672..3574934 172..434 100 <- Minus
arm_3R 3575605..3575775 1..171 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:19 Download gff for LD13390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7488744..7489024 1055..1335 100 <- Minus
3R 7489085..7489704 435..1054 100 <- Minus
3R 7489781..7490043 172..434 100 <- Minus
3R 7490714..7490884 1..171 100   Minus

LD13390.hyp Sequence

Translation from 0 to 1227

> LD13390.hyp
RRLFYQLSPIIDEIFCCCKIGKMSAFELKNLNDCLEKHLPPDELKEVKRI
LYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAI
QNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF
CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETI
WNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGK
LAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAI
ANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRT
PSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGF
KPQIIKET*

LD13390.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
pyd3-PA 386 CG3027-PA 1..386 23..408 2057 100 Plus

LD13390.pep Sequence

Translation from 67 to 1227

> LD13390.pep
MSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQ
NGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNK
VKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK
MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHI
PRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNG
AEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYT
SGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQ
VKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET*

LD13390.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17288-PA 386 GF17288-PA 1..386 1..386 1960 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25017-PA 386 GG25017-PA 1..386 1..386 2022 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21956-PA 386 GH21956-PA 1..385 1..385 1854 87.5 Plus
Dgri\GH19038-PA 283 GH19038-PA 25..281 97..371 151 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
pyd3-PA 386 CG3027-PA 1..386 1..386 2057 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19662-PA 386 GI19662-PA 1..385 1..385 1841 86.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17748-PA 146 GL17748-PA 43..130 36..123 369 78.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10462-PA 386 GM10462-PA 1..386 1..386 2087 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19466-PA 386 GD19466-PA 1..386 1..386 2082 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15027-PA 385 GJ15027-PA 1..385 1..385 1881 88.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10205-PA 386 GK10205-PA 1..386 1..386 1876 87.3 Plus
Dwil\GK10953-PA 282 GK10953-PA 24..280 97..371 155 23.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11136-PA 386 GE11136-PA 1..386 1..386 2043 97.4 Plus
Dyak\GE25776-PA 386 GE25776-PA 1..386 1..386 2039 97.2 Plus