Clone LD13436 Report

Search the DGRC for LD13436

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:134
Well:36
Vector:pBS SK-
Associated Gene/TranscriptCG12042-RA
Protein status:LD13436.pep: gold
Preliminary Size:1906
Sequenced Size:1800

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12042 2001-01-01 Release 2 assignment
CG12042 2001-11-09 Blastp of sequenced clone
CG12042 2003-01-01 Sim4 clustering to Release 3
CG12042 2008-04-29 Release 5.5 accounting
CG12042 2008-08-15 Release 5.9 accounting
CG12042 2008-12-18 5.12 accounting

Clone Sequence Records

LD13436.complete Sequence

1800 bp (1800 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069420

> LD13436.complete
ATATAACAGCTGTCGTCATTACTGCAAGAAGAGGACAAATTTGCAAATTT
ACTAAGAAACCAGGAGAAAACTAGCGTCGTCAAGATGAGCTTCATGCAAC
CGAGTCCCGTTAAGTACGCGTGCTCCTGCGGCATACTGAACCCGATCAAC
ACGCTGTTCTTCTGCCGCCACTGCCCCAAGCTGCGCTGTGGCTTCTGCGT
GACGCATGAGATCGAGTCGCACTTCTGCTCCAACTGCCTGGAAAACATTC
CCTCCACAGAGGCGCGCCACAAGAAGAACTGTTGTGCGAACTGCTTCGAC
TGTCCTTGCTGCCAGCACACCCTTTCCGCCAGAGCATCTACCGTTCCGGT
GGTGCGCAAGTCGGAGGAGGCGAAGGAACCAAAGGATGGCGACTCCAAGG
GCGAAGCCACGCCCCCAGTCCCGGCGAGCAGCAAGCCCTCTGCGGTGCCC
ACCACAAAAAAGATGTACTATTTGTCGTGCTTGTCCTGCCGATGGACCAC
GCGAGATGTGGGCATTCCCGACCAAGGCGTGGCCACGGGCACCTGGCCGG
ATAACGAGTGCTTGTACCAGGCGCGATTTAATGCTCTGGTCGAGTACTTC
CAGGCGGTGGTGCTGCAGGAGAAGCAGGAGAAACTGGAGTTCATGCGGCG
CAAGGCACCCAAGCAGCACAAGTTTCCCAGTCTGACGGATCGCACTGGAC
TAACCGTCTCACTTATTCGCCGCCAAATCGGCTGGAACGACAAGGCTCCC
AAGGCTAAAGCCGTGATAACGCCGGCAGAGGCCACGGCGGAGGTGGAGGG
CCTGCCGGAGAACATTTTCACGGAACCCTTGAACTTGCGGAATGTGACAA
CCATCACCCAGCGACATAGCCAGCCGGCGGACCAGCCCACGGCCGTTGGG
AGTCTTTATCCTCAGCGCAGGTCCCTGTGGATTAAGCGGTCGCTTCGTTG
CCGCCAGTGCGAGCACAATCTAATCAAACCGGAGTACCATCCCACATCGA
TAAAGTACCGCATTCAGCACTTCGCCAGCTACCATGTTCCTGAAGTGGTG
ATGGTGCGCTGCGAGCAGCCACTGGTGGCAGGAAAAAGCAACGCCATTTT
GCTGAAGCTCACGAATCCGACTATATACGATATGACAATTCGACTGTTGA
CTGCATCTCCTCCTGAGGATCCACAGCTGTCAACAGAGGCCACTCGTGTT
GCGAAAGAGGAACCCATTTCTTCGTCCCCACTTCTAAAAGCAGTGGGCAT
CACACTGTCGCGTCAAAACTCAACACGGGAGGTAAAACGAGATGTGATTG
ATATATCCAATGCCGAAATAGTTCCGTTGGAGAGCGAGTTCGTTCTGAAC
CAGCGCGATGACTCGAAAGAGTTCGACGAGGACGTGCAACTGTCCACCGA
GGAGCCCAAGTTTATTGTCTGGCGGAAGGGCAACAAGGTGCTTTTGCGGC
TACAGTTTACCCCAGCAGAGGAGCTGTCCGGATTAGCAGACGTCGTTCTG
GGCTTCTATATGCAGTACACATACGTCAACACCGTAAACAATGCGCAAGA
GAAGAGGGAACCCACAACCCATGTGCTCCACTCCAGGGTGTTTATCACGG
CGGGAGCAACTGAGCAGAAAGCCAACTAAACTGGAAACTTATTAGCCAAC
AGGCGTACTAATCGACTTATGCGAAATATGAAATATGCTTTATGAAAGCT
AGAGAAATATGTATTTATTTATTAATCCGTTCGTGAAACAGCAGCTAGTA
TTCAAGTATAATAAAAGGCTTGTTCTAACACTAAAAAAAAAAAAAAAAAA

LD13436.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12042-RA 1789 CG12042-RA 1..1783 1..1783 8915 100 Plus
CG2064.c 1225 CG2064.c 1120..1225 1783..1678 530 100 Minus
CG2064.a 1238 CG2064.a 1133..1238 1783..1678 530 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3554555..3556336 1782..1 8895 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7667247..7669029 1783..1 8915 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7668446..7670228 1783..1 8915 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:29:19 has no hits.

LD13436.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:30:26 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3554555..3556336 1..1782 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:37 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1545 85..1629 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:49 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1545 85..1629 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:53:23 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1545 85..1629 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:25 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1545 85..1629 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:37:11 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1545 85..1629 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:30 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:49 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:23 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:25 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:11 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
CG12042-RA 1..1782 1..1782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:26 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7667248..7669029 1..1782 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:26 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7667248..7669029 1..1782 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:26 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7667248..7669029 1..1782 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:23 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3554753..3556534 1..1782 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:43 Download gff for LD13436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7668447..7670228 1..1782 100   Minus

LD13436.pep Sequence

Translation from 84 to 1628

> LD13436.pep
MSFMQPSPVKYACSCGILNPINTLFFCRHCPKLRCGFCVTHEIESHFCSN
CLENIPSTEARHKKNCCANCFDCPCCQHTLSARASTVPVVRKSEEAKEPK
DGDSKGEATPPVPASSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGVA
TGTWPDNECLYQARFNALVEYFQAVVLQEKQEKLEFMRRKAPKQHKFPSL
TDRTGLTVSLIRRQIGWNDKAPKAKAVITPAEATAEVEGLPENIFTEPLN
LRNVTTITQRHSQPADQPTAVGSLYPQRRSLWIKRSLRCRQCEHNLIKPE
YHPTSIKYRIQHFASYHVPEVVMVRCEQPLVAGKSNAILLKLTNPTIYDM
TIRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLSRQNSTREV
KRDVIDISNAEIVPLESEFVLNQRDDSKEFDEDVQLSTEEPKFIVWRKGN
KVLLRLQFTPAEELSGLADVVLGFYMQYTYVNTVNNAQEKREPTTHVLHS
RVFITAGATEQKAN*

LD13436.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11704-PA 514 GF11704-PA 1..514 1..514 2208 82.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10724-PA 514 GG10724-PA 1..514 1..514 2636 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20017-PA 513 GH20017-PA 1..509 1..511 2191 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
DCTN4-p62-PA 514 CG12042-PA 1..514 1..514 2722 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19197-PA 512 GI19197-PA 1..504 1..507 2113 78.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10533-PA 519 GL10533-PA 1..517 1..511 2310 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11356-PA 519 GA11356-PA 1..517 1..511 2306 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20771-PA 514 GM20771-PA 1..514 1..514 2733 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10231-PA 514 GD10231-PA 1..514 1..514 2738 98.8 Plus
Dsim\GD15304-PA 340 GD15304-PA 1..317 127..443 1672 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20263-PA 512 GJ20263-PA 1..504 1..507 2193 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17803-PA 518 GK17803-PA 1..518 1..512 2117 76.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23750-PA 514 GE23750-PA 1..514 1..514 2632 94.7 Plus

LD13436.hyp Sequence

Translation from 84 to 1628

> LD13436.hyp
MSFMQPSPVKYACSCGILNPINTLFFCRHCPKLRCGFCVTHEIESHFCSN
CLENIPSTEARHKKNCCANCFDCPCCQHTLSARASTVPVVRKSEEAKEPK
DGDSKGEATPPVPASSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGVA
TGTWPDNECLYQARFNALVEYFQAVVLQEKQEKLEFMRRKAPKQHKFPSL
TDRTGLTVSLIRRQIGWNDKAPKAKAVITPAEATAEVEGLPENIFTEPLN
LRNVTTITQRHSQPADQPTAVGSLYPQRRSLWIKRSLRCRQCEHNLIKPE
YHPTSIKYRIQHFASYHVPEVVMVRCEQPLVAGKSNAILLKLTNPTIYDM
TIRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLSRQNSTREV
KRDVIDISNAEIVPLESEFVLNQRDDSKEFDEDVQLSTEEPKFIVWRKGN
KVLLRLQFTPAEELSGLADVVLGFYMQYTYVNTVNNAQEKREPTTHVLHS
RVFITAGATEQKAN*

LD13436.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12042-PA 514 CG12042-PA 1..514 1..514 2722 100 Plus