BDGP Sequence Production Resources |
Search the DGRC for LD13476
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 134 |
Well: | 76 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4880-RA |
Protein status: | LD13476.pep: gold |
Sequenced Size: | 1559 |
Gene | Date | Evidence |
---|---|---|
CG4880 | 2008-04-29 | Release 5.5 accounting |
CG4880 | 2008-04-29 | Picked prior to 5.5 |
CG4880 | 2008-08-15 | Release 5.9 accounting |
CG4880 | 2008-12-18 | 5.12 accounting |
1559 bp assembled on 2007-11-15
GenBank Submission: BT031254
> LD13476.complete TCGAGCACAAGTCAGCCAAAAATATCCAGTTGCTAACGAAACAAGGCTTA ATAAAATGGTCACATACAATACTCTAATACAGAACGAAAAGAATGAAAAT GTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGGAGGACTGAGAT TCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGTGTGCAAACACC ATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCATGGCGGAATTGG GCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATGTTATTGCAGTT CACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAGCTACAAAAACC AGTACCACTCGATCGTCCACAACCAGGACAACTACTGCAATCCCTCCCGA CGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTACTCAACCAGGA TCTTGCATTGAACCAGCTAGAACTGGCACTGGACAACACCACCAATGAGG CAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCCACACTGCGCGA ATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAATACACTCTCCTG GACCGGCAGTTCTTCTTTGGGCCGAGTGAAGAGCATGCTATCCGGCCTGA CATATTGCGGACAGAATATGATCTTGATTGATAACATGACGCCGAAGGAT GCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAGGGCGAAAAGAG CGCCAACCACACTGAGCATCCGCAACAGAAGCGGTTGACCATTGTGTTTA TCTTTAATGTGAATAGCATGCAGCCCGGCGAGGAGTTTGAGATGGATATG GAGATCCTTAGAAATATGCCACACACCCAGTTGGTCACCTTTGCGACTCT GGATCCCACCCATCTGGTCGACTGCATCCGCAGGGAAGCCGCCATCGCAA TGGTGCACCTGGAAGACGAGCACGTAGAAGAGATAATCAAAAGTATCGAT GCTAGCGCTTCTGGCTGCAAGTCGATTTTGGCCAAGGTCCTGCTCTACGG CAAACCAATAATCGCAGACTCCCAGGATACTGACCAAGTCCTTCCAGTAG GTTCCTTTTAGTAGGTTTTTAAAGTTTACGTTTTAGACAATTCTGCAAAC CAGTCGTGATAAATTTAAAAGCAGGTTGGCAAAAACTATTAGGCTAGCAT CCGTGGAATATCAGCAAACAAAGTTTAATGTTGTAAATCAAAAACCAATG TTTTATTCCTGTGTATCGTACATGTACATACATATATGGCCAATACTTTG CTATTTTTGTACTACCATATGTGTAAATGAAATTAAGACGACAAATGACA AAATTTTTGTAAAAGAAAACCAATGGTATCATATAAGAATAAATTTAAAT GAACGAATTATATTTAAATTGTAAGTTGACAGCATTCAACCACGATATTA AGTAAATGTGATTAAAATTGCCATATGTGTATAAGAGTCTAGAATCAAGT TCTTATAAATATACTATTTTTTTATTTTAAAAATAAGAAAAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3175..3247 | 1323..1397 | 117 | 65.3 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 764..846 | 1413..1335 | 117 | 63.9 | Minus |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 391..509 | 1292..1416 | 115 | 59.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16776539..16777037 | 1..499 | 99 | -> | Plus |
chrX | 16777250..16778261 | 500..1499 | 98 | <- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 56..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 56..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 56..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 56..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 56..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 83..1619 | 1..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 83..1619 | 1..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 95..1631 | 1..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 83..1619 | 1..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 95..1631 | 1..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886912..16887410 | 1..499 | 100 | -> | Plus |
X | 16887623..16888660 | 500..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886912..16887410 | 1..499 | 100 | -> | Plus |
X | 16887623..16888660 | 500..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886912..16887410 | 1..499 | 100 | -> | Plus |
X | 16887623..16888660 | 500..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16780945..16781443 | 1..499 | 100 | -> | Plus |
arm_X | 16781656..16782693 | 500..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16895010..16895508 | 1..499 | 100 | -> | Plus |
X | 16895721..16896758 | 500..1537 | 100 | Plus |
Translation from 0 to 1110
> LD13476.hyp RAQVSQKYPVANETRLNKMVTYNTLIQNEKNENVVAPISRPFARKRRTEI RRLQSNRRLNKKVCKHHLDIAHCTQKKAPWRNWAYLILALAAGIGMLLQF TDKLSTVSGFLESYKNQYHSIVHNQDNYCNPSRRLGDMVLHARHQVLNQD LALNQLELALDNTTNEAIVLVGTSGVGKSHTARILRETFPWPENVNTLSW TGSSSLGRVKSMLSGLTYCGQNMILIDNMTPKDAHFVPIINEMISEGEKS ANHTEHPQQKRLTIVFIFNVNSMQPGEEFEMDMEILRNMPHTQLVTFATL DPTHLVDCIRREAAIAMVHLEDEHVEEIIKSIDASASGCKSILAKVLLYG KPIIADSQDTDQVLPVGSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4880-PA | 351 | CG4880-PA | 1..351 | 19..369 | 1825 | 100 | Plus |
CG4880-PB | 330 | CG4880-PB | 1..330 | 19..369 | 1691 | 94 | Plus |
CG7557-PB | 336 | CG7557-PB | 104..333 | 122..350 | 297 | 32.5 | Plus |
CG7557-PA | 355 | CG7557-PA | 123..352 | 122..350 | 297 | 32.5 | Plus |
Translation from 55 to 1110
> LD13476.pep MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS F*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25262-PA | 350 | GF25262-PA | 100..348 | 91..334 | 298 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19088-PA | 337 | GG19088-PA | 10..337 | 13..343 | 1203 | 70.1 | Plus |
Dere\GG15502-PA | 335 | GG15502-PA | 105..334 | 104..332 | 312 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12792-PA | 368 | GH12792-PA | 91..368 | 67..335 | 467 | 35.3 | Plus |
Dgri\GH16649-PA | 345 | GH16649-PA | 134..341 | 127..332 | 250 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4880-PA | 351 | CG4880-PA | 1..351 | 1..351 | 1825 | 100 | Plus |
CG4880-PB | 330 | CG4880-PB | 1..330 | 1..351 | 1691 | 94 | Plus |
CG7557-PB | 336 | CG7557-PB | 104..333 | 104..332 | 297 | 32.5 | Plus |
CG7557-PA | 355 | CG7557-PA | 123..352 | 104..332 | 297 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15233-PA | 323 | GI15233-PA | 24..308 | 65..338 | 545 | 36.1 | Plus |
Dmoj\GI11610-PA | 351 | GI11610-PA | 139..346 | 127..332 | 295 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22398-PA | 348 | GL22398-PA | 72..341 | 65..334 | 563 | 42.6 | Plus |
Dper\GL21187-PA | 329 | GL21187-PA | 97..323 | 110..341 | 243 | 31 | Plus |
Dper\GL23177-PA | 338 | GL23177-PA | 109..329 | 110..333 | 235 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18498-PA | 348 | GA18498-PA | 72..341 | 65..334 | 588 | 43.4 | Plus |
Dpse\GA22535-PA | 319 | GA22535-PA | 97..316 | 110..332 | 246 | 31.3 | Plus |
Dpse\GA27176-PA | 338 | GA27176-PA | 109..325 | 110..329 | 226 | 29.8 | Plus |
Dpse\GA28203-PA | 292 | GA28203-PA | 98..276 | 123..297 | 149 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13475-PA | 363 | GM13475-PA | 1..347 | 1..347 | 1647 | 88.2 | Plus |
Dsec\GM25271-PA | 330 | GM25271-PA | 98..327 | 104..332 | 291 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17318-PA | 351 | GD17318-PA | 1..349 | 1..347 | 1633 | 87.4 | Plus |
Dsim\GD14305-PA | 329 | GD14305-PA | 111..326 | 117..332 | 276 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18837-PA | 386 | GJ18837-PA | 94..374 | 67..344 | 554 | 38.6 | Plus |
Dvir\GJ11287-PA | 351 | GJ11287-PA | 122..338 | 110..324 | 288 | 32 | Plus |