Clone LD13476 Report

Search the DGRC for LD13476

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:134
Well:76
Vector:pBS SK-
Associated Gene/TranscriptCG4880-RA
Protein status:LD13476.pep: gold
Sequenced Size:1559

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4880 2008-04-29 Release 5.5 accounting
CG4880 2008-04-29 Picked prior to 5.5
CG4880 2008-08-15 Release 5.9 accounting
CG4880 2008-12-18 5.12 accounting

Clone Sequence Records

LD13476.complete Sequence

1559 bp assembled on 2007-11-15

GenBank Submission: BT031254

> LD13476.complete
TCGAGCACAAGTCAGCCAAAAATATCCAGTTGCTAACGAAACAAGGCTTA
ATAAAATGGTCACATACAATACTCTAATACAGAACGAAAAGAATGAAAAT
GTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGGAGGACTGAGAT
TCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGTGTGCAAACACC
ATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCATGGCGGAATTGG
GCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATGTTATTGCAGTT
CACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAGCTACAAAAACC
AGTACCACTCGATCGTCCACAACCAGGACAACTACTGCAATCCCTCCCGA
CGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTACTCAACCAGGA
TCTTGCATTGAACCAGCTAGAACTGGCACTGGACAACACCACCAATGAGG
CAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCCACACTGCGCGA
ATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAATACACTCTCCTG
GACCGGCAGTTCTTCTTTGGGCCGAGTGAAGAGCATGCTATCCGGCCTGA
CATATTGCGGACAGAATATGATCTTGATTGATAACATGACGCCGAAGGAT
GCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAGGGCGAAAAGAG
CGCCAACCACACTGAGCATCCGCAACAGAAGCGGTTGACCATTGTGTTTA
TCTTTAATGTGAATAGCATGCAGCCCGGCGAGGAGTTTGAGATGGATATG
GAGATCCTTAGAAATATGCCACACACCCAGTTGGTCACCTTTGCGACTCT
GGATCCCACCCATCTGGTCGACTGCATCCGCAGGGAAGCCGCCATCGCAA
TGGTGCACCTGGAAGACGAGCACGTAGAAGAGATAATCAAAAGTATCGAT
GCTAGCGCTTCTGGCTGCAAGTCGATTTTGGCCAAGGTCCTGCTCTACGG
CAAACCAATAATCGCAGACTCCCAGGATACTGACCAAGTCCTTCCAGTAG
GTTCCTTTTAGTAGGTTTTTAAAGTTTACGTTTTAGACAATTCTGCAAAC
CAGTCGTGATAAATTTAAAAGCAGGTTGGCAAAAACTATTAGGCTAGCAT
CCGTGGAATATCAGCAAACAAAGTTTAATGTTGTAAATCAAAAACCAATG
TTTTATTCCTGTGTATCGTACATGTACATACATATATGGCCAATACTTTG
CTATTTTTGTACTACCATATGTGTAAATGAAATTAAGACGACAAATGACA
AAATTTTTGTAAAAGAAAACCAATGGTATCATATAAGAATAAATTTAAAT
GAACGAATTATATTTAAATTGTAAGTTGACAGCATTCAACCACGATATTA
AGTAAATGTGATTAAAATTGCCATATGTGTATAAGAGTCTAGAATCAAGT
TCTTATAAATATACTATTTTTTTATTTTAAAAATAAGAAAAAAAAAAAAA
AAAAAAAAA

LD13476.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-RA 1723 CG4880-RA 118..1661 1..1544 7720 100 Plus
CG4880.a 1651 CG4880.a 543..1589 498..1544 5235 100 Plus
CG4880.a 1651 CG4880.a 109..545 1..437 2185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16777248..16778299 498..1537 4920 98.5 Plus
chrX 22417052 chrX 16776539..16777038 1..500 2470 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16887621..16888667 498..1544 5235 100 Plus
X 23542271 X 16886912..16887411 1..500 2500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16895719..16896765 498..1544 5235 100 Plus
X 23527363 X 16895010..16895509 1..500 2500 100 Plus
Blast to na_te.dros performed 2019-03-16 15:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3175..3247 1323..1397 117 65.3 Plus
accord2 7650 accord2 QBERT 7650bp 764..846 1413..1335 117 63.9 Minus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 391..509 1292..1416 115 59.5 Plus

LD13476.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:32:34 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16776539..16777037 1..499 99 -> Plus
chrX 16777250..16778261 500..1499 98 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:38 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 56..1111 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:03 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 56..1111 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:40 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 56..1111 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:43 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 56..1111 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:48:25 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 56..1111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:55:14 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 83..1619 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:03 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 83..1619 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:40 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 95..1631 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:44 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 83..1619 1..1537 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:48:25 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 95..1631 1..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:34 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886912..16887410 1..499 100 -> Plus
X 16887623..16888660 500..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:34 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886912..16887410 1..499 100 -> Plus
X 16887623..16888660 500..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:34 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886912..16887410 1..499 100 -> Plus
X 16887623..16888660 500..1537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:40 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16780945..16781443 1..499 100 -> Plus
arm_X 16781656..16782693 500..1537 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:08 Download gff for LD13476.complete
Subject Subject Range Query Range Percent Splice Strand
X 16895010..16895508 1..499 100 -> Plus
X 16895721..16896758 500..1537 100   Plus

LD13476.hyp Sequence

Translation from 0 to 1110

> LD13476.hyp
RAQVSQKYPVANETRLNKMVTYNTLIQNEKNENVVAPISRPFARKRRTEI
RRLQSNRRLNKKVCKHHLDIAHCTQKKAPWRNWAYLILALAAGIGMLLQF
TDKLSTVSGFLESYKNQYHSIVHNQDNYCNPSRRLGDMVLHARHQVLNQD
LALNQLELALDNTTNEAIVLVGTSGVGKSHTARILRETFPWPENVNTLSW
TGSSSLGRVKSMLSGLTYCGQNMILIDNMTPKDAHFVPIINEMISEGEKS
ANHTEHPQQKRLTIVFIFNVNSMQPGEEFEMDMEILRNMPHTQLVTFATL
DPTHLVDCIRREAAIAMVHLEDEHVEEIIKSIDASASGCKSILAKVLLYG
KPIIADSQDTDQVLPVGSF*

LD13476.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-PA 351 CG4880-PA 1..351 19..369 1825 100 Plus
CG4880-PB 330 CG4880-PB 1..330 19..369 1691 94 Plus
CG7557-PB 336 CG7557-PB 104..333 122..350 297 32.5 Plus
CG7557-PA 355 CG7557-PA 123..352 122..350 297 32.5 Plus

LD13476.pep Sequence

Translation from 55 to 1110

> LD13476.pep
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF
NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV
HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS
F*

LD13476.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25262-PA 350 GF25262-PA 100..348 91..334 298 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19088-PA 337 GG19088-PA 10..337 13..343 1203 70.1 Plus
Dere\GG15502-PA 335 GG15502-PA 105..334 104..332 312 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12792-PA 368 GH12792-PA 91..368 67..335 467 35.3 Plus
Dgri\GH16649-PA 345 GH16649-PA 134..341 127..332 250 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-PA 351 CG4880-PA 1..351 1..351 1825 100 Plus
CG4880-PB 330 CG4880-PB 1..330 1..351 1691 94 Plus
CG7557-PB 336 CG7557-PB 104..333 104..332 297 32.5 Plus
CG7557-PA 355 CG7557-PA 123..352 104..332 297 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15233-PA 323 GI15233-PA 24..308 65..338 545 36.1 Plus
Dmoj\GI11610-PA 351 GI11610-PA 139..346 127..332 295 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22398-PA 348 GL22398-PA 72..341 65..334 563 42.6 Plus
Dper\GL21187-PA 329 GL21187-PA 97..323 110..341 243 31 Plus
Dper\GL23177-PA 338 GL23177-PA 109..329 110..333 235 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18498-PA 348 GA18498-PA 72..341 65..334 588 43.4 Plus
Dpse\GA22535-PA 319 GA22535-PA 97..316 110..332 246 31.3 Plus
Dpse\GA27176-PA 338 GA27176-PA 109..325 110..329 226 29.8 Plus
Dpse\GA28203-PA 292 GA28203-PA 98..276 123..297 149 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13475-PA 363 GM13475-PA 1..347 1..347 1647 88.2 Plus
Dsec\GM25271-PA 330 GM25271-PA 98..327 104..332 291 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17318-PA 351 GD17318-PA 1..349 1..347 1633 87.4 Plus
Dsim\GD14305-PA 329 GD14305-PA 111..326 117..332 276 31.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18837-PA 386 GJ18837-PA 94..374 67..344 554 38.6 Plus
Dvir\GJ11287-PA 351 GJ11287-PA 122..338 110..324 288 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14642-PA 225 GK14642-PA 1..219 120..332 375 36.8 Plus
Dwil\GK17024-PA 341 GK17024-PA 98..336 91..332 298 32.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17633-PA 340 GE17633-PA 51..335 57..344 1101 71.2 Plus
Dyak\GE21810-PA 339 GE21810-PA 107..333 104..330 328 33.8 Plus