Clone LD13504 Report

Search the DGRC for LD13504

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:135
Well:4
Vector:pBS SK-
Associated Gene/TranscriptCG40280-RA
Protein status:LD13504.pep: validated full length
Preliminary Size:1613
Sequenced Size:1416

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17478 2001-01-01 Release 2 assignment
CG40280 2001-11-09 Blastp of sequenced clone
CG17478 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LD13504.complete Sequence

1416 bp (1416 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070881

> LD13504.complete
TATAAGCACCCAACAGAACACACTTTGAACAGTTGAATAAAGAACCTCAT
AAAGAGCAGAAGCTCTTCTCTTGTTATTTAAAGTGTACTTTAGCAAAATA
CTAATATCTCCTAAATATCAAACATTACACAAGGAAAGTACTCTTCTGGC
TGCAATGGACCCGCAAAACTTTTAGTCCTTTCTAATGTACCGAGCTTGAG
AAATTATGGAGACCACGAGCGCTAATCAATGGCGCTGGGTTCCGACGAAG
CTAAACGTAGCAGACTTGGCAACAAAGTTCATTTCTAAACCCTAAGCGTC
GCCTAATGTATTAATGGTCCGCTGTTTCTTCGATAACCAGACAAGCACAC
TGGACGCACCGTTTCGGATAGCGAGCGAAACGAGATTCGAAAAACGAACT
TGGTGGTAAAGATATCAAACATACAAGCGATCCAAGTAAACGACGAGGGT
TTTTTTTATATAGAGCCACCGCTACGTTTCTCCTATACGTAGCCAGCCAC
CCTTCGAACTAGATGCAAACTTGAAAAAATTGTGAAGACTGTAACCTTTG
AACAAATTAAGTACGCTAAGGGTATACAGTTCAGAGAAGCTCAACGAGAT
ACCGTATATAAATCGGTCCGAAAATGTTGTCAGAGATGTAAAAACAATTC
CGCCAAAATGTCACCATTGCCACCTGCCAGGGTCGCCATGAAGCCATTTA
CCTACACCGGGGTAGATTTTTTGGATATATCCTCGTGACCGTGGGAAAAA
CGTTCAATTAGAAATATACTACAGCTTGGATACCAGCTCTTGTGCGATGT
GTCTTACTAACTTAATGTCTCGACGAGCAACACCGAAGAAAATATTCTCA
GATAATGGCACAAATTTCAACGGAGAAGGTGGGGAAGGAAGAACTAAAAA
GGTGGACTTTGGAAAACTTCTTGTTAAATATGACCAGATTAAGTTGCCCA
AGAGAGAGTTGTAATGCGATATCAACGGAATGATTTTTTAAAGCTCTTAA
AAATGTTCTAAATCTAGTTTTCGACCTTGTTGCGAATTTTTAATCTAAAT
GTTTCTTGAAGATCAACGATCAGAACATGAAGAACGTAATCGTCCGCTAT
TATATATTACAGTCGCCTTGCATTTTAACAATGTCAATATGTCAAGAGTA
AGATGGAACTTACAGCAAACTGGCGCAAATTAGGGGCAACAGTCCGTTAC
TCACCTATATCCGCGCTCAAATACAACTATATTTGCAATCTTGTATGGTA
AACAAACGTAATTTGCAATTTTCATTGCACCTTGTTTAAAAATTGTCAAA
ATTTTGTAGTCCTGAAAACGCTCTCTGTAGCTAAAGTGATTTAATAAATT
TTTAAATAAATGTGTATGATTTGCACTGAGAATTGTTTATGCAGAAAAAA
AAAAAAAAAAAAAAAA

LD13504.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 19:57:43 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 508726..510119 1394..1 6970 100 Minus
chrU 10048995 chrU 8760161..8760289 129..1 615 98.4 Minus
chr2RHet 3288813 chr2RHet 346981..347109 129..1 615 98.4 Minus
chr2L 23010047 chr2L 22400729..22400857 129..1 615 98.4 Minus
chr2RHet 3288813 chr2RHet 351896..352026 1..131 610 97.7 Plus
chrU 10048995 chrU 1030008..1030136 1..129 600 97.7 Plus
chr2RHet 3288813 chr2RHet 356182..356310 129..1 600 97.7 Minus
chr3RHet 2517486 chr3RHet 95931..96059 1..129 600 97.7 Plus
chr3RHet 2517486 chr3RHet 104185..104313 1..129 570 96.1 Plus
chr2RHet 3288813 chr2RHet 624505..624632 129..1 535 96.1 Minus
chr3RHet 2517486 chr3RHet 92703..92830 1..129 535 96.1 Plus
chr2RHet 3288813 chr2RHet 628682..628804 129..1 460 92.2 Minus
chr2RHet 3288813 chr2RHet 2626655..2626756 102..1 375 91.2 Minus
chr2RHet 3288813 chr2RHet 2619805..2619906 102..1 360 90.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4621115..4622511 1397..1 6985 100 Minus
2R 25286936 2R 1220314..1220442 129..1 615 98.4 Minus
U 3151297 U 895393..895521 129..1 615 98.4 Minus
Y 3667352 Y 3648884..3649012 1..129 615 98.4 Plus
3CEN 744266 3CEN 118513..118641 129..1 615 98.4 Minus
2L 23513712 2L 22402220..22402348 129..1 615 98.4 Minus
2R 25286936 2R 1225229..1225359 1..131 610 97.7 Plus
2R 25286936 2R 1229515..1229643 129..1 600 97.7 Minus
X 23542271 X 21918953..21919081 129..1 600 97.7 Minus
3R 32079331 3R 1338323..1338451 129..1 600 97.7 Minus
3R 32079331 3R 1330069..1330197 129..1 570 96.1 Minus
2R 25286936 2R 1881370..1881497 129..1 535 96.1 Minus
3R 32079331 3R 1341552..1341679 129..1 535 96.1 Minus
2R 25286936 2R 1885547..1885669 129..1 460 92.2 Minus
3L 28110227 3L 28094477..28094578 1..102 375 91.2 Plus
3L 28110227 3L 28101327..28101428 1..102 360 90.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4622314..4623710 1397..1 6985 100 Minus
2R 25260384 2R 1220314..1220442 129..1 615 98.4 Minus
Unmapped_scaffold_31 87365 Unmapped_scaffold_31 30106..30234 129..1 615 98.4 Minus
Y 3410481 Y 2846172..2846300 1..129 615 98.4 Plus
2L 23513712 2L 22402220..22402348 129..1 615 98.4 Minus
2R 25260384 2R 1225229..1225359 1..131 610 97.7 Plus
2R 25260384 2R 1229515..1229643 129..1 600 97.6 Minus
3R 31820162 3R 1135901..1136029 129..1 600 97.6 Minus
X 23527363 X 21904045..21904173 129..1 600 97.6 Minus
3R 31820162 3R 1127647..1127775 129..1 570 96.1 Minus
2R 25260384 2R 1881370..1881497 129..1 545 96.1 Minus
3R 31820162 3R 1139130..1139257 129..1 545 96.1 Minus
3L 28103327 3L 28087577..28087705 1..129 390 89.2 Plus
3L 28103327 3L 28094427..28094555 1..129 375 88.4 Plus
2R 25260384 2R 1885598..1885669 72..1 330 97.2 Minus
2R 25260384 2R 1885547..1885599 129..77 235 96.2 Minus
Blast to na_te.dros performed 2019-03-16 15:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 5135..5188 822..875 134 76.4 Plus

LD13504.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:21 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 508726..510119 1..1394 100   Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:57:26 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 19:57:26 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4621118..4622511 1..1394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4621118..4622511 1..1394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4621118..4622511 1..1394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 508623..510016 1..1394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 508623..510016 1..1394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 508623..510016 1..1394 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:44 Download gff for LD13504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4622317..4623710 1..1394 100   Minus

LD13504.pep Sequence

Translation from 796 to 963

> LD13504.pep
MCLTNLMSRRATPKKIFSDNGTNFNGEGGEGRTKKVDFGKLLVKYDQIKL
PKREL*
Sequence LD13504.pep has no blast hits.

LD13504.hyp Sequence

Translation from 796 to 963

> LD13504.hyp
MCLTNLMSRRATPKKIFSDNGTNFNGEGGEGRTKKVDFGKLLVKYDQIKL
PKREL*
Sequence LD13504.hyp has no blast hits.