LD13504.complete Sequence
1416 bp (1416 high quality bases) assembled on 2001-11-09
GenBank Submission: AY070881
> LD13504.complete
TATAAGCACCCAACAGAACACACTTTGAACAGTTGAATAAAGAACCTCAT
AAAGAGCAGAAGCTCTTCTCTTGTTATTTAAAGTGTACTTTAGCAAAATA
CTAATATCTCCTAAATATCAAACATTACACAAGGAAAGTACTCTTCTGGC
TGCAATGGACCCGCAAAACTTTTAGTCCTTTCTAATGTACCGAGCTTGAG
AAATTATGGAGACCACGAGCGCTAATCAATGGCGCTGGGTTCCGACGAAG
CTAAACGTAGCAGACTTGGCAACAAAGTTCATTTCTAAACCCTAAGCGTC
GCCTAATGTATTAATGGTCCGCTGTTTCTTCGATAACCAGACAAGCACAC
TGGACGCACCGTTTCGGATAGCGAGCGAAACGAGATTCGAAAAACGAACT
TGGTGGTAAAGATATCAAACATACAAGCGATCCAAGTAAACGACGAGGGT
TTTTTTTATATAGAGCCACCGCTACGTTTCTCCTATACGTAGCCAGCCAC
CCTTCGAACTAGATGCAAACTTGAAAAAATTGTGAAGACTGTAACCTTTG
AACAAATTAAGTACGCTAAGGGTATACAGTTCAGAGAAGCTCAACGAGAT
ACCGTATATAAATCGGTCCGAAAATGTTGTCAGAGATGTAAAAACAATTC
CGCCAAAATGTCACCATTGCCACCTGCCAGGGTCGCCATGAAGCCATTTA
CCTACACCGGGGTAGATTTTTTGGATATATCCTCGTGACCGTGGGAAAAA
CGTTCAATTAGAAATATACTACAGCTTGGATACCAGCTCTTGTGCGATGT
GTCTTACTAACTTAATGTCTCGACGAGCAACACCGAAGAAAATATTCTCA
GATAATGGCACAAATTTCAACGGAGAAGGTGGGGAAGGAAGAACTAAAAA
GGTGGACTTTGGAAAACTTCTTGTTAAATATGACCAGATTAAGTTGCCCA
AGAGAGAGTTGTAATGCGATATCAACGGAATGATTTTTTAAAGCTCTTAA
AAATGTTCTAAATCTAGTTTTCGACCTTGTTGCGAATTTTTAATCTAAAT
GTTTCTTGAAGATCAACGATCAGAACATGAAGAACGTAATCGTCCGCTAT
TATATATTACAGTCGCCTTGCATTTTAACAATGTCAATATGTCAAGAGTA
AGATGGAACTTACAGCAAACTGGCGCAAATTAGGGGCAACAGTCCGTTAC
TCACCTATATCCGCGCTCAAATACAACTATATTTGCAATCTTGTATGGTA
AACAAACGTAATTTGCAATTTTCATTGCACCTTGTTTAAAAATTGTCAAA
ATTTTGTAGTCCTGAAAACGCTCTCTGTAGCTAAAGTGATTTAATAAATT
TTTAAATAAATGTGTATGATTTGCACTGAGAATTGTTTATGCAGAAAAAA
AAAAAAAAAAAAAAAA
LD13504.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 19:57:43 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 508726..510119 | 1394..1 | 6970 | 100 | Minus |
chrU | 10048995 | chrU | 8760161..8760289 | 129..1 | 615 | 98.4 | Minus |
chr2RHet | 3288813 | chr2RHet | 346981..347109 | 129..1 | 615 | 98.4 | Minus |
chr2L | 23010047 | chr2L | 22400729..22400857 | 129..1 | 615 | 98.4 | Minus |
chr2RHet | 3288813 | chr2RHet | 351896..352026 | 1..131 | 610 | 97.7 | Plus |
chrU | 10048995 | chrU | 1030008..1030136 | 1..129 | 600 | 97.7 | Plus |
chr2RHet | 3288813 | chr2RHet | 356182..356310 | 129..1 | 600 | 97.7 | Minus |
chr3RHet | 2517486 | chr3RHet | 95931..96059 | 1..129 | 600 | 97.7 | Plus |
chr3RHet | 2517486 | chr3RHet | 104185..104313 | 1..129 | 570 | 96.1 | Plus |
chr2RHet | 3288813 | chr2RHet | 624505..624632 | 129..1 | 535 | 96.1 | Minus |
chr3RHet | 2517486 | chr3RHet | 92703..92830 | 1..129 | 535 | 96.1 | Plus |
chr2RHet | 3288813 | chr2RHet | 628682..628804 | 129..1 | 460 | 92.2 | Minus |
chr2RHet | 3288813 | chr2RHet | 2626655..2626756 | 102..1 | 375 | 91.2 | Minus |
chr2RHet | 3288813 | chr2RHet | 2619805..2619906 | 102..1 | 360 | 90.2 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4621115..4622511 | 1397..1 | 6985 | 100 | Minus |
2R | 25286936 | 2R | 1220314..1220442 | 129..1 | 615 | 98.4 | Minus |
U | 3151297 | U | 895393..895521 | 129..1 | 615 | 98.4 | Minus |
Y | 3667352 | Y | 3648884..3649012 | 1..129 | 615 | 98.4 | Plus |
3CEN | 744266 | 3CEN | 118513..118641 | 129..1 | 615 | 98.4 | Minus |
2L | 23513712 | 2L | 22402220..22402348 | 129..1 | 615 | 98.4 | Minus |
2R | 25286936 | 2R | 1225229..1225359 | 1..131 | 610 | 97.7 | Plus |
2R | 25286936 | 2R | 1229515..1229643 | 129..1 | 600 | 97.7 | Minus |
X | 23542271 | X | 21918953..21919081 | 129..1 | 600 | 97.7 | Minus |
3R | 32079331 | 3R | 1338323..1338451 | 129..1 | 600 | 97.7 | Minus |
3R | 32079331 | 3R | 1330069..1330197 | 129..1 | 570 | 96.1 | Minus |
2R | 25286936 | 2R | 1881370..1881497 | 129..1 | 535 | 96.1 | Minus |
3R | 32079331 | 3R | 1341552..1341679 | 129..1 | 535 | 96.1 | Minus |
2R | 25286936 | 2R | 1885547..1885669 | 129..1 | 460 | 92.2 | Minus |
3L | 28110227 | 3L | 28094477..28094578 | 1..102 | 375 | 91.2 | Plus |
3L | 28110227 | 3L | 28101327..28101428 | 1..102 | 360 | 90.2 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 4622314..4623710 | 1397..1 | 6985 | 100 | Minus |
2R | 25260384 | 2R | 1220314..1220442 | 129..1 | 615 | 98.4 | Minus |
Unmapped_scaffold_31 | 87365 | Unmapped_scaffold_31 | 30106..30234 | 129..1 | 615 | 98.4 | Minus |
Y | 3410481 | Y | 2846172..2846300 | 1..129 | 615 | 98.4 | Plus |
2L | 23513712 | 2L | 22402220..22402348 | 129..1 | 615 | 98.4 | Minus |
2R | 25260384 | 2R | 1225229..1225359 | 1..131 | 610 | 97.7 | Plus |
2R | 25260384 | 2R | 1229515..1229643 | 129..1 | 600 | 97.6 | Minus |
3R | 31820162 | 3R | 1135901..1136029 | 129..1 | 600 | 97.6 | Minus |
X | 23527363 | X | 21904045..21904173 | 129..1 | 600 | 97.6 | Minus |
3R | 31820162 | 3R | 1127647..1127775 | 129..1 | 570 | 96.1 | Minus |
2R | 25260384 | 2R | 1881370..1881497 | 129..1 | 545 | 96.1 | Minus |
3R | 31820162 | 3R | 1139130..1139257 | 129..1 | 545 | 96.1 | Minus |
3L | 28103327 | 3L | 28087577..28087705 | 1..129 | 390 | 89.2 | Plus |
3L | 28103327 | 3L | 28094427..28094555 | 1..129 | 375 | 88.4 | Plus |
2R | 25260384 | 2R | 1885598..1885669 | 72..1 | 330 | 97.2 | Minus |
2R | 25260384 | 2R | 1885547..1885599 | 129..77 | 235 | 96.2 | Minus |
Blast to na_te.dros performed 2019-03-16 15:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rooA | 7621 | rooA ROOA_LTR 7621bp | 5135..5188 | 822..875 | 134 | 76.4 | Plus |
LD13504.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:21 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 508726..510119 | 1..1394 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:57:26 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 19:57:26 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4621118..4622511 | 1..1394 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4621118..4622511 | 1..1394 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:21 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4621118..4622511 | 1..1394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 508623..510016 | 1..1394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 508623..510016 | 1..1394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:47 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 508623..510016 | 1..1394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:44 Download gff for
LD13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4622317..4623710 | 1..1394 | 100 | | Minus |
LD13504.pep Sequence
Translation from 796 to 963
> LD13504.pep
MCLTNLMSRRATPKKIFSDNGTNFNGEGGEGRTKKVDFGKLLVKYDQIKL
PKREL*
Sequence LD13504.pep has no blast hits.
LD13504.hyp Sequence
Translation from 796 to 963
> LD13504.hyp
MCLTNLMSRRATPKKIFSDNGTNFNGEGGEGRTKKVDFGKLLVKYDQIKL
PKREL*
Sequence LD13504.hyp has no blast hits.