Clone LD13601 Report

Search the DGRC for LD13601

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:136
Well:1
Vector:pBS SK-
Associated Gene/TranscriptUGP-RA
Protein status:LD13601.pep: gold
Preliminary Size:2049
Sequenced Size:2029

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4347 2001-11-29 Blastp of sequenced clone
UGP 2008-04-29 Release 5.5 accounting
UGP 2008-08-15 Release 5.9 accounting
UGP 2008-12-18 5.12 accounting

Clone Sequence Records

LD13601.complete Sequence

2029 bp (2029 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069422

> LD13601.complete
CGGAGAGCTTCGTTTTGGCGTCAATCTTCTCTCTCGTTCTTTCGTTCCTA
ACGCGAGTGCATAGCCAAACACTAGAAAAGTTGAGATTCTCACTGTGAGA
TATTGTTATATAGTGCTCCATAGTTCACAATGCCCTCCGGTATAAGACCC
ATCGATGTTCTGCTGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACC
GTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTC
TGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGC
CAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACG
TTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGC
TGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAAC
GAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCT
GAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGA
TTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATC
GAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATGAA
CTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAG
GATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATT
AGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGA
TATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTTCC
GCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGT
TTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCTGAACATCCT
CAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCA
TGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGGTACTCTCATT
CAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGA
GCATGTGGATGACTTTAAGTCGGTTAAGACCTTCAAGTTCTTTAACACCA
ACAACATTTGGGCCAACCTGGCAGCCATTGATCGCGTTTTGCGTGAGCGT
ACCTTAAACATGGAAATTATTGTGAACAACAAGACGCTGGAGAACGGAAC
CCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCGGCCATGAAGTGCTTTG
ATGGCGCCATCGGCATCAATGTGCCGCGTTCCCGTTTCTTGCCCGTGAAG
AAATCTTCAGATCTGCTGCTGGTCATGTCAAATTTATATACGCTTAAGAA
CGGCAGCCTGGTAATGTCGCCACAGCGAATGTTCCCTACCACGCCGCTCG
TCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAAGGAGTTCCTGGGTCGC
TTTGCCAACATCCCGGACATCATTGAGCTGGATCACTTGACCGTGAGCGG
AGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGCGGCACTGTGATCATCA
TTGCTAACCATGGCGATCGTATCGATATCCCAGCTGGAGCCATTCTGGAG
AACAAGATTGTATCTGGCAATATGCGCATCTTGGACCACTAAATCAAATC
CTGTACAATTGGATATCGTCTCACTAACTGTAGTCTAATTGTCTAAGTTT
TATGTAGTAGCCATGTTCGCGTTTCAAATTTCCAATAACGAATTTCATTT
AGCCAATTGTTGTAAGCACAAAGTGTGTCATCTGTATATATCGTTAAGTA
GAAATCAGTCAGGGTTTTTAATCAAAATCGAATTGCAATATGTTTTCAAA
AATGTTAGTTGTAGTCGTTCAAATGAGATATAAAAGATAGCAGCTGTTGA
AACTCAATAAAGGCATGTTTATTTCTATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD13601.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RA 2110 UGP-RA 133..2110 1..1978 9890 100 Plus
UGP-RE 2731 UGP-RE 170..2144 1..1981 9790 99.6 Plus
UGP-RD 2197 UGP-RD 329..2126 178..1981 8905 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9343846..9344258 1585..1173 2050 99.8 Minus
chr3L 24539361 chr3L 9343386..9343779 1978..1585 1940 99.5 Minus
chr3L 24539361 chr3L 9344811..9345159 809..461 1745 100 Minus
chr3L 24539361 chr3L 9344530..9344756 1036..810 1135 100 Minus
chr3L 24539361 chr3L 9345817..9346003 364..178 905 98.9 Minus
chr3L 24539361 chr3L 9349497..9349675 179..1 895 100 Minus
chr3L 24539361 chr3L 9344334..9344474 1174..1034 705 100 Minus
chr3L 24539361 chr3L 9345667..9345760 456..363 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9351917..9352329 1585..1173 2065 100 Minus
3L 28110227 3L 9351454..9351850 1981..1585 1985 100 Minus
3L 28110227 3L 9352882..9353230 809..461 1745 100 Minus
3L 28110227 3L 9352601..9352827 1036..810 1135 100 Minus
3L 28110227 3L 9353888..9354074 364..178 935 100 Minus
3L 28110227 3L 9357581..9357759 179..1 895 100 Minus
3L 28110227 3L 9352405..9352545 1174..1034 705 100 Minus
3L 28110227 3L 9353738..9353831 456..363 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9345017..9345429 1585..1173 2065 100 Minus
3L 28103327 3L 9344554..9344950 1981..1585 1985 100 Minus
3L 28103327 3L 9345982..9346330 809..461 1745 100 Minus
3L 28103327 3L 9345701..9345927 1036..810 1135 100 Minus
3L 28103327 3L 9346988..9347174 364..178 935 100 Minus
3L 28103327 3L 9350681..9350859 179..1 895 100 Minus
3L 28103327 3L 9345505..9345645 1174..1034 705 100 Minus
3L 28103327 3L 9346838..9346931 456..363 470 100 Minus
Blast to na_te.dros performed 2019-03-16 09:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1293..1366 1816..1746 118 67.6 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 50..101 1934..1883 116 69.2 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 4919..4970 1934..1883 116 69.2 Minus

LD13601.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:10:59 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9343386..9343779 1585..1978 99 <- Minus
chr3L 9343847..9344256 1175..1584 99 <- Minus
chr3L 9344334..9344472 1036..1174 100 <- Minus
chr3L 9344531..9344756 810..1035 100 <- Minus
chr3L 9344811..9345157 463..809 100 <- Minus
chr3L 9345658..9345758 365..462 96 <- Minus
chr3L 9345817..9346003 178..364 98 <- Minus
chr3L 9349499..9349675 1..177 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:42 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 130..1692 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:00 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 130..1692 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:19 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 130..1692 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:49 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 130..1692 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:53 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 130..1692 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:15 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 133..2110 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:00 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 133..2110 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:19 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 125..2102 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:49 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 133..2110 1..1978 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:53 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 125..2102 1..1978 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:59 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9357583..9357759 1..177 100   Minus
3L 9353888..9354074 178..364 100 <- Minus
3L 9351457..9351850 1585..1978 100 <- Minus
3L 9351918..9352327 1175..1584 100 <- Minus
3L 9352405..9352543 1036..1174 100 <- Minus
3L 9352602..9352827 810..1035 100 <- Minus
3L 9352882..9353228 463..809 100 <- Minus
3L 9353729..9353829 365..462 96 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:59 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9357583..9357759 1..177 100   Minus
3L 9353888..9354074 178..364 100 <- Minus
3L 9351457..9351850 1585..1978 100 <- Minus
3L 9351918..9352327 1175..1584 100 <- Minus
3L 9352405..9352543 1036..1174 100 <- Minus
3L 9352602..9352827 810..1035 100 <- Minus
3L 9352882..9353228 463..809 100 <- Minus
3L 9353729..9353829 365..462 96 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:59 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9357583..9357759 1..177 100   Minus
3L 9353888..9354074 178..364 100 <- Minus
3L 9351457..9351850 1585..1978 100 <- Minus
3L 9351918..9352327 1175..1584 100 <- Minus
3L 9352405..9352543 1036..1174 100 <- Minus
3L 9352602..9352827 810..1035 100 <- Minus
3L 9352882..9353228 463..809 100 <- Minus
3L 9353729..9353829 365..462 96 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:19 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9350683..9350859 1..177 100   Minus
arm_3L 9344557..9344950 1585..1978 100 <- Minus
arm_3L 9345018..9345427 1175..1584 100 <- Minus
arm_3L 9345505..9345643 1036..1174 100 <- Minus
arm_3L 9345702..9345927 810..1035 100 <- Minus
arm_3L 9345982..9346328 463..809 100 <- Minus
arm_3L 9346829..9346929 365..462 96 <- Minus
arm_3L 9346988..9347174 178..364 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:09 Download gff for LD13601.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9350683..9350859 1..177 100   Minus
3L 9344557..9344950 1585..1978 100 <- Minus
3L 9345018..9345427 1175..1584 100 <- Minus
3L 9345505..9345643 1036..1174 100 <- Minus
3L 9345702..9345927 810..1035 100 <- Minus
3L 9345982..9346328 463..809 100 <- Minus
3L 9346829..9346929 365..462 96 <- Minus
3L 9346988..9347174 178..364 100 <- Minus

LD13601.hyp Sequence

Translation from 129 to 1691

> LD13601.hyp
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQVCRIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTF
LDLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTF
NQSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKF
IEEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRA
DVKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAA
IDRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVP
RSRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFS
KVKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRID
IPAGAILENKIVSGNMRILDH*

LD13601.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PE 518 CG4347-PE 1..518 1..521 2661 99.4 Plus
UGP-PA 520 CG4347-PA 1..520 1..521 2660 99.4 Plus
UGP-PD 511 CG4347-PD 8..511 15..521 2583 99.2 Plus
UGP-PC 513 CG4347-PC 8..513 15..521 2582 99.2 Plus

LD13601.pep Sequence

Translation from 129 to 1691

> LD13601.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFL
DLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFN
QSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFI
EEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRAD
VKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAI
DRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPR
SRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSK
VKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDI
PAGAILENKIVSGNMRILDH*

LD13601.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23744-PA 529 GF23744-PA 10..529 1..520 2711 97.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14051-PA 513 GG14051-PA 8..513 15..520 2669 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16268-PA 511 GH16268-PA 6..511 13..520 2576 95.3 Plus
Dgri\GH22478-PA 493 GH22478-PA 1..493 1..520 2472 90.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PA 520 CG4347-PA 1..520 1..520 2686 100 Plus
UGP-PE 518 CG4347-PE 1..518 1..520 2662 99.6 Plus
UGP-PC 513 CG4347-PC 8..513 15..520 2608 99.8 Plus
UGP-PD 511 CG4347-PD 8..511 15..520 2584 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13203-PA 520 GI13203-PA 1..520 1..520 2686 96.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18418-PA 513 GL18418-PA 10..513 17..520 2605 96.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18125-PA 513 GA18125-PA 10..513 17..520 2605 96.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24885-PA 513 GM24885-PA 8..513 15..520 2685 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12937-PA 531 GD12937-PA 12..531 1..520 2765 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11980-PA 529 GJ11980-PA 10..529 1..520 2695 97.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24300-PA 513 GK24300-PA 6..513 13..520 2599 95.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21254-PA 520 GE21254-PA 1..520 1..520 2763 99.8 Plus