BDGP Sequence Production Resources |
Search the DGRC for LD13601
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 136 |
Well: | 1 |
Vector: | pBS SK- |
Associated Gene/Transcript | UGP-RA |
Protein status: | LD13601.pep: gold |
Preliminary Size: | 2049 |
Sequenced Size: | 2029 |
Gene | Date | Evidence |
---|---|---|
CG4347 | 2001-11-29 | Blastp of sequenced clone |
UGP | 2008-04-29 | Release 5.5 accounting |
UGP | 2008-08-15 | Release 5.9 accounting |
UGP | 2008-12-18 | 5.12 accounting |
2029 bp (2029 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069422
> LD13601.complete CGGAGAGCTTCGTTTTGGCGTCAATCTTCTCTCTCGTTCTTTCGTTCCTA ACGCGAGTGCATAGCCAAACACTAGAAAAGTTGAGATTCTCACTGTGAGA TATTGTTATATAGTGCTCCATAGTTCACAATGCCCTCCGGTATAAGACCC ATCGATGTTCTGCTGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACC GTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTC TGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGC CAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACG TTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGC TGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAAC GAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCT GAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGA TTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATC GAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATGAA CTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAG GATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATT AGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGA TATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTTCC GCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGT TTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCTGAACATCCT CAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCA TGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGGTACTCTCATT CAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGA GCATGTGGATGACTTTAAGTCGGTTAAGACCTTCAAGTTCTTTAACACCA ACAACATTTGGGCCAACCTGGCAGCCATTGATCGCGTTTTGCGTGAGCGT ACCTTAAACATGGAAATTATTGTGAACAACAAGACGCTGGAGAACGGAAC CCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCGGCCATGAAGTGCTTTG ATGGCGCCATCGGCATCAATGTGCCGCGTTCCCGTTTCTTGCCCGTGAAG AAATCTTCAGATCTGCTGCTGGTCATGTCAAATTTATATACGCTTAAGAA CGGCAGCCTGGTAATGTCGCCACAGCGAATGTTCCCTACCACGCCGCTCG TCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAAGGAGTTCCTGGGTCGC TTTGCCAACATCCCGGACATCATTGAGCTGGATCACTTGACCGTGAGCGG AGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGCGGCACTGTGATCATCA TTGCTAACCATGGCGATCGTATCGATATCCCAGCTGGAGCCATTCTGGAG AACAAGATTGTATCTGGCAATATGCGCATCTTGGACCACTAAATCAAATC CTGTACAATTGGATATCGTCTCACTAACTGTAGTCTAATTGTCTAAGTTT TATGTAGTAGCCATGTTCGCGTTTCAAATTTCCAATAACGAATTTCATTT AGCCAATTGTTGTAAGCACAAAGTGTGTCATCTGTATATATCGTTAAGTA GAAATCAGTCAGGGTTTTTAATCAAAATCGAATTGCAATATGTTTTCAAA AATGTTAGTTGTAGTCGTTCAAATGAGATATAAAAGATAGCAGCTGTTGA AACTCAATAAAGGCATGTTTATTTCTATAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9343846..9344258 | 1585..1173 | 2050 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 9343386..9343779 | 1978..1585 | 1940 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 9344811..9345159 | 809..461 | 1745 | 100 | Minus |
chr3L | 24539361 | chr3L | 9344530..9344756 | 1036..810 | 1135 | 100 | Minus |
chr3L | 24539361 | chr3L | 9345817..9346003 | 364..178 | 905 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 9349497..9349675 | 179..1 | 895 | 100 | Minus |
chr3L | 24539361 | chr3L | 9344334..9344474 | 1174..1034 | 705 | 100 | Minus |
chr3L | 24539361 | chr3L | 9345667..9345760 | 456..363 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9351917..9352329 | 1585..1173 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 9351454..9351850 | 1981..1585 | 1985 | 100 | Minus |
3L | 28110227 | 3L | 9352882..9353230 | 809..461 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 9352601..9352827 | 1036..810 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 9353888..9354074 | 364..178 | 935 | 100 | Minus |
3L | 28110227 | 3L | 9357581..9357759 | 179..1 | 895 | 100 | Minus |
3L | 28110227 | 3L | 9352405..9352545 | 1174..1034 | 705 | 100 | Minus |
3L | 28110227 | 3L | 9353738..9353831 | 456..363 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9345017..9345429 | 1585..1173 | 2065 | 100 | Minus |
3L | 28103327 | 3L | 9344554..9344950 | 1981..1585 | 1985 | 100 | Minus |
3L | 28103327 | 3L | 9345982..9346330 | 809..461 | 1745 | 100 | Minus |
3L | 28103327 | 3L | 9345701..9345927 | 1036..810 | 1135 | 100 | Minus |
3L | 28103327 | 3L | 9346988..9347174 | 364..178 | 935 | 100 | Minus |
3L | 28103327 | 3L | 9350681..9350859 | 179..1 | 895 | 100 | Minus |
3L | 28103327 | 3L | 9345505..9345645 | 1174..1034 | 705 | 100 | Minus |
3L | 28103327 | 3L | 9346838..9346931 | 456..363 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1293..1366 | 1816..1746 | 118 | 67.6 | Minus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 50..101 | 1934..1883 | 116 | 69.2 | Minus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 4919..4970 | 1934..1883 | 116 | 69.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9343386..9343779 | 1585..1978 | 99 | <- | Minus |
chr3L | 9343847..9344256 | 1175..1584 | 99 | <- | Minus |
chr3L | 9344334..9344472 | 1036..1174 | 100 | <- | Minus |
chr3L | 9344531..9344756 | 810..1035 | 100 | <- | Minus |
chr3L | 9344811..9345157 | 463..809 | 100 | <- | Minus |
chr3L | 9345658..9345758 | 365..462 | 96 | <- | Minus |
chr3L | 9345817..9346003 | 178..364 | 98 | <- | Minus |
chr3L | 9349499..9349675 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 1..1563 | 130..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 1..1563 | 130..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 1..1563 | 130..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 1..1563 | 130..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 1..1563 | 130..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 133..2110 | 1..1978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 133..2110 | 1..1978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 125..2102 | 1..1978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 133..2110 | 1..1978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RA | 125..2102 | 1..1978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9357583..9357759 | 1..177 | 100 | Minus | |
3L | 9353888..9354074 | 178..364 | 100 | <- | Minus |
3L | 9351457..9351850 | 1585..1978 | 100 | <- | Minus |
3L | 9351918..9352327 | 1175..1584 | 100 | <- | Minus |
3L | 9352405..9352543 | 1036..1174 | 100 | <- | Minus |
3L | 9352602..9352827 | 810..1035 | 100 | <- | Minus |
3L | 9352882..9353228 | 463..809 | 100 | <- | Minus |
3L | 9353729..9353829 | 365..462 | 96 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9357583..9357759 | 1..177 | 100 | Minus | |
3L | 9353888..9354074 | 178..364 | 100 | <- | Minus |
3L | 9351457..9351850 | 1585..1978 | 100 | <- | Minus |
3L | 9351918..9352327 | 1175..1584 | 100 | <- | Minus |
3L | 9352405..9352543 | 1036..1174 | 100 | <- | Minus |
3L | 9352602..9352827 | 810..1035 | 100 | <- | Minus |
3L | 9352882..9353228 | 463..809 | 100 | <- | Minus |
3L | 9353729..9353829 | 365..462 | 96 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9357583..9357759 | 1..177 | 100 | Minus | |
3L | 9353888..9354074 | 178..364 | 100 | <- | Minus |
3L | 9351457..9351850 | 1585..1978 | 100 | <- | Minus |
3L | 9351918..9352327 | 1175..1584 | 100 | <- | Minus |
3L | 9352405..9352543 | 1036..1174 | 100 | <- | Minus |
3L | 9352602..9352827 | 810..1035 | 100 | <- | Minus |
3L | 9352882..9353228 | 463..809 | 100 | <- | Minus |
3L | 9353729..9353829 | 365..462 | 96 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9350683..9350859 | 1..177 | 100 | Minus | |
arm_3L | 9344557..9344950 | 1585..1978 | 100 | <- | Minus |
arm_3L | 9345018..9345427 | 1175..1584 | 100 | <- | Minus |
arm_3L | 9345505..9345643 | 1036..1174 | 100 | <- | Minus |
arm_3L | 9345702..9345927 | 810..1035 | 100 | <- | Minus |
arm_3L | 9345982..9346328 | 463..809 | 100 | <- | Minus |
arm_3L | 9346829..9346929 | 365..462 | 96 | <- | Minus |
arm_3L | 9346988..9347174 | 178..364 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9350683..9350859 | 1..177 | 100 | Minus | |
3L | 9344557..9344950 | 1585..1978 | 100 | <- | Minus |
3L | 9345018..9345427 | 1175..1584 | 100 | <- | Minus |
3L | 9345505..9345643 | 1036..1174 | 100 | <- | Minus |
3L | 9345702..9345927 | 810..1035 | 100 | <- | Minus |
3L | 9345982..9346328 | 463..809 | 100 | <- | Minus |
3L | 9346829..9346929 | 365..462 | 96 | <- | Minus |
3L | 9346988..9347174 | 178..364 | 100 | <- | Minus |
Translation from 129 to 1691
> LD13601.hyp MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS NLKSPKNEQVCRIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTF LDLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTF NQSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKF IEEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRA DVKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAA IDRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVP RSRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFS KVKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRID IPAGAILENKIVSGNMRILDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
UGP-PE | 518 | CG4347-PE | 1..518 | 1..521 | 2661 | 99.4 | Plus |
UGP-PA | 520 | CG4347-PA | 1..520 | 1..521 | 2660 | 99.4 | Plus |
UGP-PD | 511 | CG4347-PD | 8..511 | 15..521 | 2583 | 99.2 | Plus |
UGP-PC | 513 | CG4347-PC | 8..513 | 15..521 | 2582 | 99.2 | Plus |
Translation from 129 to 1691
> LD13601.pep MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS NLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFL DLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFN QSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFI EEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRAD VKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAI DRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPR SRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSK VKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDI PAGAILENKIVSGNMRILDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23744-PA | 529 | GF23744-PA | 10..529 | 1..520 | 2711 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14051-PA | 513 | GG14051-PA | 8..513 | 15..520 | 2669 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16268-PA | 511 | GH16268-PA | 6..511 | 13..520 | 2576 | 95.3 | Plus |
Dgri\GH22478-PA | 493 | GH22478-PA | 1..493 | 1..520 | 2472 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
UGP-PA | 520 | CG4347-PA | 1..520 | 1..520 | 2686 | 100 | Plus |
UGP-PE | 518 | CG4347-PE | 1..518 | 1..520 | 2662 | 99.6 | Plus |
UGP-PC | 513 | CG4347-PC | 8..513 | 15..520 | 2608 | 99.8 | Plus |
UGP-PD | 511 | CG4347-PD | 8..511 | 15..520 | 2584 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13203-PA | 520 | GI13203-PA | 1..520 | 1..520 | 2686 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18418-PA | 513 | GL18418-PA | 10..513 | 17..520 | 2605 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18125-PA | 513 | GA18125-PA | 10..513 | 17..520 | 2605 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24885-PA | 513 | GM24885-PA | 8..513 | 15..520 | 2685 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12937-PA | 531 | GD12937-PA | 12..531 | 1..520 | 2765 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11980-PA | 529 | GJ11980-PA | 10..529 | 1..520 | 2695 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24300-PA | 513 | GK24300-PA | 6..513 | 13..520 | 2599 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21254-PA | 520 | GE21254-PA | 1..520 | 1..520 | 2763 | 99.8 | Plus |