Clone LD13611 Report

Search the DGRC for LD13611

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:136
Well:11
Vector:pBS SK-
Associated Gene/TranscriptCG10802-RA
Protein status:LD13611.pep: gold
Preliminary Size:1602
Sequenced Size:1468

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10802 2001-01-01 Release 2 assignment
CG10802 2001-11-09 Blastp of sequenced clone
CG10802 2003-01-01 Sim4 clustering to Release 3
CG10802 2008-04-29 Release 5.5 accounting
CG10802 2008-08-15 Release 5.9 accounting
CG10802 2008-12-18 5.12 accounting

Clone Sequence Records

LD13611.complete Sequence

1468 bp (1468 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069424

> LD13611.complete
CATAAATTGTTTATGATTTCGATACGTGAACGGGGAATTGCGTGGATTCA
TAGAAACGATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGAAGGAGTTC
AAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGGACAGATCC
CAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTGCGAGGACA
CGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACGGAACCTTA
GGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACGGCTGTACA
TTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGTCCTTCTGA
CACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACTCAGGACAG
CACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGATACCACCTC
GTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTACGCCTCATT
TGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCAACGATCTG
ATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCCGAGGTGGC
GCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAAGGATCACG
AGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCAACATGTGC
TGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATTAAGCTGCT
CTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGTCGTCGGCG
AGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAACAGCAGCTA
ACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGGAGCTTGTCCAGAA
GCTACAGCAAAATGTGAAGGGCAGTCGAAAGTACTTCCAGCAGCTGCTTA
AACGTTACGCCACCGCCGAAGCCGAGCGTCTCTGCGATTTGCCCAAAAAG
GATCGTCCGAAATATTTCTCTCTCCATCGACGCGATGGCATCGAGGTGGA
CTTCATCAACACATTCTTGCGGGCGGCTCCGGAAGGAATCTTCTACTTTC
TCACTGTTTCCGAGAGCGTTTTTGCTGGCAGCAGTGCCAAAGGACATCTG
GTGCTGCGCGGAGATCCAGAAATTGTCGGGAAACTCGGTCCCCAATTTAT
GGAAATTCTCGAGGGCAAGGGAAACGGCAAAGAGGACAATTTCCAGGGAA
AAATCAACAACTTGGCTAGACTGCAGGAATGCCAAGAGCTGCTGGAGGCG
GAGTTTAAACCAAAGAGGATCATCGAAGCCGCTCCTGCAAATGGAGCTCA
ACTGGAGGCAGAGGAATGAAGTATTTTTGTAGTGTTCGAATATACAATAT
TTGTATGCGCTACGAAAATTCATAAAATAAATATTGCCTAGTTTTATAAC
AAAAAAAAAAAAAAAAAA

LD13611.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-RA 1618 CG10802-RA 104..1556 1..1453 7265 100 Plus
nc_21742.a 666 nc_21742.a 1..613 839..1453 3020 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3376673..3377441 96..864 3785 99.5 Plus
chrX 22417052 chrX 3377499..3378084 865..1450 2840 99 Plus
chrX 22417052 chrX 3376516..3376612 1..97 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3483144..3483912 96..864 3845 100 Plus
X 23542271 X 3483970..3484558 865..1453 2945 100 Plus
X 23542271 X 3482987..3483083 1..97 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3491242..3492010 96..864 3845 100 Plus
X 23527363 X 3492068..3492656 865..1453 2945 100 Plus
X 23527363 X 3491085..3491181 1..97 485 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:19:49 has no hits.

LD13611.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:20:51 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3376516..3376612 1..97 100 -> Plus
chrX 3376675..3377441 98..864 99 -> Plus
chrX 3377499..3378084 865..1450 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:44 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 59..1369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:42 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 59..1369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:14:45 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 59..1369 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:19 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 59..1369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:44 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 59..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:20 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 19..1468 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:41 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 19..1468 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:14:45 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 23..1472 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:19 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 19..1468 1..1450 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:44 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 23..1472 1..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:20:51 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
X 3482987..3483083 1..97 100 -> Plus
X 3483146..3483912 98..864 100 -> Plus
X 3483970..3484555 865..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:20:51 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
X 3482987..3483083 1..97 100 -> Plus
X 3483146..3483912 98..864 100 -> Plus
X 3483970..3484555 865..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:20:51 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
X 3482987..3483083 1..97 100 -> Plus
X 3483146..3483912 98..864 100 -> Plus
X 3483970..3484555 865..1450 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:14:45 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3377020..3377116 1..97 100 -> Plus
arm_X 3377179..3377945 98..864 100 -> Plus
arm_X 3378003..3378588 865..1450 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:35 Download gff for LD13611.complete
Subject Subject Range Query Range Percent Splice Strand
X 3491244..3492010 98..864 100 -> Plus
X 3492068..3492653 865..1450 100   Plus
X 3491085..3491181 1..97 100 -> Plus

LD13611.pep Sequence

Translation from 58 to 1368

> LD13611.pep
MVFKCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTIL
FPEGGGQPCDYGTLGGFPVKNVQRKGSTAVHFVESPTSFEQDAEVLLTLD
YQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVSYIQLSTPHLIS
RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGL
ARVVRIEGIESNMCCGTHVTNLSQLQCIKLLYAEKVKANVLVHFVVGERV
LVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRY
ATAEAERLCDLPKKDRPKYFSLHRRDGIEVDFINTFLRAAPEGIFYFLTV
SESVFAGSSAKGHLVLRGDPEIVGKLGPQFMEILEGKGNGKEDNFQGKIN
NLARLQECQELLEAEFKPKRIIEAAPANGAQLEAEE*

LD13611.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21792-PA 451 GF21792-PA 1..422 1..422 1940 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18657-PA 436 GG18657-PA 1..436 1..436 2197 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12380-PA 433 GH12380-PA 1..433 1..430 1769 76.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-PA 436 CG10802-PA 1..436 1..436 2252 100 Plus
CG10802-PB 412 CG10802-PB 1..412 1..436 2088 94.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14436-PA 431 GI14436-PA 1..422 1..420 1804 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13126-PA 434 GL13126-PA 1..434 1..430 1769 78.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10567-PA 434 GA10567-PA 1..434 1..430 1767 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12293-PA 436 GM12293-PA 1..436 1..436 2230 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16642-PA 436 GD16642-PA 1..436 1..436 2256 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18773-PA 431 GJ18773-PA 1..431 1..430 1791 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24978-PA 432 GK24978-PA 1..432 1..428 1703 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16301-PA 436 GE16301-PA 1..436 1..436 2186 93.8 Plus

LD13611.hyp Sequence

Translation from 58 to 1368

> LD13611.hyp
MVFKCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTIL
FPEGGGQPCDYGTLGGFPVKNVQRKGSTAVHFVESPTSFEQDAEVLLTLD
YQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVSYIQLSTPHLIS
RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGL
ARVVRIEGIESNMCCGTHVTNLSQLQCIKLLYAEKVKANVLVHFVVGERV
LVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRY
ATAEAERLCDLPKKDRPKYFSLHRRDGIEVDFINTFLRAAPEGIFYFLTV
SESVFAGSSAKGHLVLRGDPEIVGKLGPQFMEILEGKGNGKEDNFQGKIN
NLARLQECQELLEAEFKPKRIIEAAPANGAQLEAEE*

LD13611.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-PA 436 CG10802-PA 1..436 1..436 2252 100 Plus
CG10802-PB 412 CG10802-PB 1..412 1..436 2088 94.3 Plus