Clone LD13641 Report

Search the DGRC for LD13641

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:136
Well:41
Vector:pBS SK-
Associated Gene/Transcripta6-RA
Protein status:LD13641.pep: gold
Preliminary Size:2070
Sequenced Size:2120

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3771 2001-01-01 Release 2 assignment
CG3771 2001-11-02 Blastp of sequenced clone
CG3771 2003-01-01 Sim4 clustering to Release 3
a6 2008-04-29 Release 5.5 accounting
a6 2008-08-15 Release 5.9 accounting
a6 2008-12-18 5.12 accounting

Clone Sequence Records

LD13641.complete Sequence

2120 bp (2120 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069426

> LD13641.complete
AGTACAACAAAAGCACAAATTAAGCAGCTGCCGCGCGAAAAAACAACCAT
CTCGGCCCCGCTCGCATCTCGGCATGTCCAGCGGCGGGAGGCGCAGCGCC
TAGTCCCGCGCCTCCGCTCCTCTCAAGGAAATCCCCCTGCGCCGCCACGC
AATTATGCAAGTTGCAGCAGTGGATCTAACTGTACTCGCCGCCAGTGGAA
CAGCAAGAGGAGGAGGAGGAGGAGCCCCACGGGCCCGAGCCCATGACCCT
TGACAACCCGTGGCAGGCACCGCCACCGCTAGAAGACGAGTCCACACACT
CGACATGAACCAGAAACATTCCGAACCATTCTACATATCGCCCCGGCTGT
TCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGGATGGAACGCCTG
CTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGACCAAGTGGCTCT
CGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGCGGCGCCATGTCG
CCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTGTCGGATGACGAT
GAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCACAATCGCCTCCT
GATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCAGAAGGCAGGCGC
CGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGACAGCATCCTGATA
ACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAGCACGGCAAGAGT
GCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCGCACCGCTCACAC
AGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTGCCGCGCACCTCC
ACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCCCAAGCCGTGTCG
AGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCGAAGGCGGAGAGG
GCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTGGGCGGAGGCATC
ACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGTCATCGCAAACCG
TATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCCTGGCTTTTAGTG
GAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAGCTGCAGAAACTG
TCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGCTCCCTCGCCGCC
CACGCCCATCTCCCTAAAACTGTCCAGCGACCTCAGCATATCACTGATCT
CAGACGAAGACGATTGCGAAAGCACCGGTCCACATGTCAACGGAGGAGTC
GGCACCGAACCGGTGCACCCCGTCGTGGTGGCTGCGGCGGAGGCACACGC
TGCCGCCAAGCTGCTCAAGCAGCAGCAGCCACAGCTCTCGGTGGTGCAGC
ATCTGCAGTACGTCGGCGGCGGACTCGCAGCTCCAGTGGCTCTTGCCCTT
CCGGTGATGGCAGCAAATCCGACCTCGTCTGCTTCCGTTGTTGCCTTGCC
GCTGCAGCTGCCGCGGCGCCGAAAACTGGGATGAGCTGGATGACTGATGA
CCGATGACCCGCCAGAACCGAGTCCCCATCGCCATAATATCATTCCCCGA
GCCGGAAGCACGGCATAGACTTTAACTAGCAGTGGCTAGAAGTGCAAATA
TGAACGTAGGTTTAGCGACAACACATCACTATTTCCCAGTTATCCTTGAA
TCCAGGACTAGTCCTTGTCCGGTCGATTTTTGTATCCTTCCCCTTTCCCA
AGCACCTTCTCTCCATCTCACTCAGTTGCCCATTAATCTCCCTGTCTCTG
TCATTCTCATATTTTAAGCTTTAAATGAAACGAGACGACAACGTACAAAT
GAAAGTAGAAAAGCATCAACCCATATACATTGTTGAGCAAAAAACACAAA
TTTCAAAAGATTATAAGAGGGAGTAGAAAATTTGAAGCGAGTGAGAAAGG
TGAGCCCAATATTTATAAAGTACAAGTAGCTAGCTTAAGATATACTATGT
ATATGTACATTTGATTTAGTGTATCATATATTACATGGCTGAATCACGTC
GTGTAATCCGTCGCAGTCCGCCGTCTGTATTACATTAGCTGATCACCAAA
AAAAAAAAAAAAAAAAAAAA

LD13641.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
a6-RA 2296 a6-RA 135..2234 1..2100 10500 100 Plus
CG14798.a 882 CG14798.a 716..882 2100..1934 835 100 Minus
CG14798-RA 911 CG14798-RA 745..911 2100..1934 835 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1587526..1589321 2097..302 8980 100 Minus
chrX 22417052 chrX 1589386..1589687 302..1 1510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693677..1695475 2100..302 8995 100 Minus
X 23542271 X 1695540..1695841 302..1 1510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1701775..1703573 2100..302 8995 100 Minus
X 23527363 X 1703638..1703939 302..1 1510 100 Minus
Blast to na_te.dros performed 2019-03-16 10:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1635..1741 1890..1998 116 58.7 Plus

LD13641.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:26 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1587526..1589320 303..2097 100 <- Minus
chrX 1589386..1589687 1..302 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:47 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 1..1230 305..1534 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:33 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 1..1230 305..1534 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:42:17 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 1..1230 305..1534 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:06 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 1..1230 305..1534 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:20 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 1..1230 305..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:32 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 49..2145 1..2097 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:33 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 49..2145 1..2097 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:17 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 49..2145 1..2097 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:06 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 49..2145 1..2097 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:20 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
a6-RA 49..2145 1..2097 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:26 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
X 1693680..1695474 303..2097 100 <- Minus
X 1695540..1695841 1..302 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:26 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
X 1693680..1695474 303..2097 100 <- Minus
X 1695540..1695841 1..302 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:26 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
X 1693680..1695474 303..2097 100 <- Minus
X 1695540..1695841 1..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:17 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587713..1589507 303..2097 100 <- Minus
arm_X 1589573..1589874 1..302 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:15 Download gff for LD13641.complete
Subject Subject Range Query Range Percent Splice Strand
X 1701778..1703572 303..2097 100 <- Minus
X 1703638..1703939 1..302 100   Minus

LD13641.hyp Sequence

Translation from 304 to 1533

> LD13641.hyp
MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA
SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI
PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR
SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA
STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI
YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT
PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA
AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL
QLPRRRKLG*

LD13641.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
a6-PC 409 CG3771-PC 1..409 1..409 2092 100 Plus
a6-PB 409 CG3771-PB 1..409 1..409 2092 100 Plus
a6-PA 409 CG3771-PA 1..409 1..409 2092 100 Plus

LD13641.pep Sequence

Translation from 304 to 1533

> LD13641.pep
MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA
SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI
PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR
SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA
STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI
YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT
PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA
AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL
QLPRRRKLG*

LD13641.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22007-PA 420 GF22007-PA 1..420 1..409 947 59.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12686-PA 412 GG12686-PA 1..412 1..409 1695 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24444-PA 451 GH24444-PA 2..451 1..409 656 46.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
a6-PC 409 CG3771-PC 1..409 1..409 2092 100 Plus
a6-PB 409 CG3771-PB 1..409 1..409 2092 100 Plus
a6-PA 409 CG3771-PA 1..409 1..409 2092 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16033-PA 441 GI16033-PA 1..441 1..409 701 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14365-PA 434 GL14365-PA 1..434 1..409 1020 60.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17676-PA 434 GA17676-PA 1..434 1..409 1023 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18959-PA 409 GM18959-PA 1..409 1..409 1741 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24632-PA 409 GD24632-PA 1..409 1..409 1744 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15543-PA 418 GJ15543-PA 1..418 1..409 720 49.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10094-PA 475 GK10094-PA 1..310 1..301 577 49.6 Plus
Dwil\GK10094-PA 475 GK10094-PA 378..475 323..409 159 53.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16517-PA 412 GE16517-PA 1..412 1..409 1644 91.3 Plus