BDGP Sequence Production Resources |
Search the DGRC for LD13641
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 136 |
Well: | 41 |
Vector: | pBS SK- |
Associated Gene/Transcript | a6-RA |
Protein status: | LD13641.pep: gold |
Preliminary Size: | 2070 |
Sequenced Size: | 2120 |
Gene | Date | Evidence |
---|---|---|
CG3771 | 2001-01-01 | Release 2 assignment |
CG3771 | 2001-11-02 | Blastp of sequenced clone |
CG3771 | 2003-01-01 | Sim4 clustering to Release 3 |
a6 | 2008-04-29 | Release 5.5 accounting |
a6 | 2008-08-15 | Release 5.9 accounting |
a6 | 2008-12-18 | 5.12 accounting |
2120 bp (2120 high quality bases) assembled on 2001-11-02
GenBank Submission: AY069426
> LD13641.complete AGTACAACAAAAGCACAAATTAAGCAGCTGCCGCGCGAAAAAACAACCAT CTCGGCCCCGCTCGCATCTCGGCATGTCCAGCGGCGGGAGGCGCAGCGCC TAGTCCCGCGCCTCCGCTCCTCTCAAGGAAATCCCCCTGCGCCGCCACGC AATTATGCAAGTTGCAGCAGTGGATCTAACTGTACTCGCCGCCAGTGGAA CAGCAAGAGGAGGAGGAGGAGGAGCCCCACGGGCCCGAGCCCATGACCCT TGACAACCCGTGGCAGGCACCGCCACCGCTAGAAGACGAGTCCACACACT CGACATGAACCAGAAACATTCCGAACCATTCTACATATCGCCCCGGCTGT TCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGGATGGAACGCCTG CTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGACCAAGTGGCTCT CGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGCGGCGCCATGTCG CCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTGTCGGATGACGAT GAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCACAATCGCCTCCT GATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCAGAAGGCAGGCGC CGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGACAGCATCCTGATA ACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAGCACGGCAAGAGT GCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCGCACCGCTCACAC AGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTGCCGCGCACCTCC ACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCCCAAGCCGTGTCG AGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCGAAGGCGGAGAGG GCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTGGGCGGAGGCATC ACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGTCATCGCAAACCG TATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCCTGGCTTTTAGTG GAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAGCTGCAGAAACTG TCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGCTCCCTCGCCGCC CACGCCCATCTCCCTAAAACTGTCCAGCGACCTCAGCATATCACTGATCT CAGACGAAGACGATTGCGAAAGCACCGGTCCACATGTCAACGGAGGAGTC GGCACCGAACCGGTGCACCCCGTCGTGGTGGCTGCGGCGGAGGCACACGC TGCCGCCAAGCTGCTCAAGCAGCAGCAGCCACAGCTCTCGGTGGTGCAGC ATCTGCAGTACGTCGGCGGCGGACTCGCAGCTCCAGTGGCTCTTGCCCTT CCGGTGATGGCAGCAAATCCGACCTCGTCTGCTTCCGTTGTTGCCTTGCC GCTGCAGCTGCCGCGGCGCCGAAAACTGGGATGAGCTGGATGACTGATGA CCGATGACCCGCCAGAACCGAGTCCCCATCGCCATAATATCATTCCCCGA GCCGGAAGCACGGCATAGACTTTAACTAGCAGTGGCTAGAAGTGCAAATA TGAACGTAGGTTTAGCGACAACACATCACTATTTCCCAGTTATCCTTGAA TCCAGGACTAGTCCTTGTCCGGTCGATTTTTGTATCCTTCCCCTTTCCCA AGCACCTTCTCTCCATCTCACTCAGTTGCCCATTAATCTCCCTGTCTCTG TCATTCTCATATTTTAAGCTTTAAATGAAACGAGACGACAACGTACAAAT GAAAGTAGAAAAGCATCAACCCATATACATTGTTGAGCAAAAAACACAAA TTTCAAAAGATTATAAGAGGGAGTAGAAAATTTGAAGCGAGTGAGAAAGG TGAGCCCAATATTTATAAAGTACAAGTAGCTAGCTTAAGATATACTATGT ATATGTACATTTGATTTAGTGTATCATATATTACATGGCTGAATCACGTC GTGTAATCCGTCGCAGTCCGCCGTCTGTATTACATTAGCTGATCACCAAA AAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1635..1741 | 1890..1998 | 116 | 58.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1587526..1589320 | 303..2097 | 100 | <- | Minus |
chrX | 1589386..1589687 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 1..1230 | 305..1534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 1..1230 | 305..1534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 1..1230 | 305..1534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 1..1230 | 305..1534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 1..1230 | 305..1534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 49..2145 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 49..2145 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 49..2145 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 49..2145 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
a6-RA | 49..2145 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1693680..1695474 | 303..2097 | 100 | <- | Minus |
X | 1695540..1695841 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1693680..1695474 | 303..2097 | 100 | <- | Minus |
X | 1695540..1695841 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1693680..1695474 | 303..2097 | 100 | <- | Minus |
X | 1695540..1695841 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1587713..1589507 | 303..2097 | 100 | <- | Minus |
arm_X | 1589573..1589874 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1701778..1703572 | 303..2097 | 100 | <- | Minus |
X | 1703638..1703939 | 1..302 | 100 | Minus |
Translation from 304 to 1533
> LD13641.hyp MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL QLPRRRKLG*
Translation from 304 to 1533
> LD13641.pep MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL QLPRRRKLG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22007-PA | 420 | GF22007-PA | 1..420 | 1..409 | 947 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12686-PA | 412 | GG12686-PA | 1..412 | 1..409 | 1695 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24444-PA | 451 | GH24444-PA | 2..451 | 1..409 | 656 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
a6-PC | 409 | CG3771-PC | 1..409 | 1..409 | 2092 | 100 | Plus |
a6-PB | 409 | CG3771-PB | 1..409 | 1..409 | 2092 | 100 | Plus |
a6-PA | 409 | CG3771-PA | 1..409 | 1..409 | 2092 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16033-PA | 441 | GI16033-PA | 1..441 | 1..409 | 701 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14365-PA | 434 | GL14365-PA | 1..434 | 1..409 | 1020 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17676-PA | 434 | GA17676-PA | 1..434 | 1..409 | 1023 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18959-PA | 409 | GM18959-PA | 1..409 | 1..409 | 1741 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24632-PA | 409 | GD24632-PA | 1..409 | 1..409 | 1744 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15543-PA | 418 | GJ15543-PA | 1..418 | 1..409 | 720 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10094-PA | 475 | GK10094-PA | 1..310 | 1..301 | 577 | 49.6 | Plus |
Dwil\GK10094-PA | 475 | GK10094-PA | 378..475 | 323..409 | 159 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16517-PA | 412 | GE16517-PA | 1..412 | 1..409 | 1644 | 91.3 | Plus |