Clone LD13649 Report

Search the DGRC for LD13649

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:136
Well:49
Vector:pBS SK-
Associated Gene/TranscriptCG7997-RA
Protein status:LD13649.pep: gold
Preliminary Size:1833
Sequenced Size:1743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7997 2001-01-01 Release 2 assignment
CG7997 2001-11-09 Blastp of sequenced clone
CG7997 2003-01-01 Sim4 clustering to Release 3
CG7997 2008-04-29 Release 5.5 accounting
CG7997 2008-08-15 Release 5.9 accounting
CG7997 2008-12-18 5.12 accounting

Clone Sequence Records

LD13649.complete Sequence

1743 bp (1743 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069427

> LD13649.complete
CTGTTCTCGGTCTCTCCTCGATTTTCTCTATTTGCTCCCTGTGATCGCTG
TGAACTTGGCGTGATAAGGGGCTCCGGCTCCTCCTGCAATCGAGAAAGCC
CGCTGTTTGCGCCACCCGGCGAACACCAATCAGTCGATGGGAGTACTCCG
CTGCAATAGCAATTAGCCACTAACCTTCTGTCAGCTCTTCAGGTGCCATT
CCCCTACCTCCAGCTCCTCAGGTGCCCCTGCCAAACAGAGTTATCTGGAG
TGCCGCCCGCTGGAGAATATAAATTCCCTGGGTGCCCAAAGGCCAGGATT
CAGTCGGTGCCACTAGCTCGCCATGTACGGAACGTGGGGCGTCTTTCTGG
GCGGGATTCTTCTGCTGCAGGTTCTGCAATTATCCATGGGCCTCGATAAT
GGCCTGGCACTAAAGCCACCTATGGGCTGGATGTCCTGGGAGCGATTCCG
TTGCATCACCGACTGTAAACTGTATCCGGATGAGTGCATCAGTGAAAAAC
TTTTCCAAAGACATGCGGATCTCCTGGTTTCTGAAGGATATGCGGATGCT
GGCTACGAGTACGTCATCATAGATGACTGCTGGCTGGAGAAGAATCGCGA
CAACGATACCCAGAAGCTGGTTCCGGACAGAAAGCGCTTTCCCAACGGCC
TAAATGCTTTATCCGATCATATCCACAACCAGGGTCTGAAGTTTGGCTTG
TATCAGGATTACGGCACCAACACCTGCGCTGGCTATCCCGGAGTGATCAA
GCATATGAAGCTGGACGCCCAAACCTTTGCGGATTGGGATGTGGACTACG
TGAAGCTGGACGGCTGTTATGCCAATATCAGCGACATGGCCTCGGGCTAT
CCGGAGTTCGGACGCCTGCTCAATGAAACTGGTCGACCGATGGTATACTC
CTGCAGTTGGCCCGCGTATCAGGAGGATGCAGGAGAAATGCCCGATTATG
AGTCACTCAAGCAGCACTGTAATCTGTGGCGCAACTGGGACGACATCGAA
GACTCGCTCGAGTCCCTTATGCAGATCATTGACTACTTTGCCAAGAATCA
GGACAGGATTCAGCCGCATGGCGGACCAGGACATTGGAACGATCCAGATA
TGCTGCTGCTGGGAAACTACGGCTTGAGCTACGATCAAAGCAAGCTGCAG
ATGGCGATTTGGGCCATTATGGCAGCTCCTCTAATTATGTCCAATGATCT
GGCTGCAGTGCGTCCCGAGATCAAGGCTATACTCCAGAATCGTGCGGTTA
TTGCTGTGGACCAGGATGAGCTGGGCATCCAGGGGCGCCGTGTTTTGTCC
CGCAACCAAATCGAAGTCTGGAAGCGTCCCATTACGCCAGTAACCAAGAG
TGGACATCACTCCTATGCTGTCGCCTTTGTCAGTCGCCGAGATGATGGCG
CTCCCTACAGGATCCCCTTCACGGTCAAGGAGCTCGGATTGACGAATCCC
AAGGGTTATAATGTGCAGGATCTGTACGATGCCAGCAGCAAGTTGGGCGT
CTTCCAGTCTGAGAGTCAGTTCATCACACGCGTCAATCCCAATGGCGTAA
CTTTCTACAAGTTTACAGCGTTGTAAGCCCAAGATATGCAAATCAGCCGC
TGCCATCAAATCGAATATGCTCTTATATACACACTATTTCCACATTGTCC
ATTGACGTTGCATCGATGATCTGTGTAATAAGTTAATTCCGACAATAAAT
ACCAGGTAATCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD13649.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-RA 1776 CG7997-RA 58..1774 1..1717 8585 100 Plus
CG7997-RB 1607 CG7997-RB 81..1605 193..1717 7625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12229144..12229715 1242..671 2800 99.3 Minus
chr2R 21145070 chr2R 12230394..12230808 415..1 2045 99.5 Minus
chr2R 21145070 chr2R 12228780..12229083 1545..1242 1505 99.7 Minus
chr2R 21145070 chr2R 12229777..12229958 670..489 910 100 Minus
chr2R 21145070 chr2R 12228551..12228722 1715..1544 860 100 Minus
chr2R 21145070 chr2R 12230023..12230071 492..444 245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16341844..16342415 1242..671 2860 100 Minus
2R 25286936 2R 16343094..16343508 415..1 2075 100 Minus
2R 25286936 2R 16341480..16341783 1545..1242 1520 100 Minus
2R 25286936 2R 16342477..16342658 670..489 910 100 Minus
2R 25286936 2R 16341249..16341422 1717..1544 870 100 Minus
2R 25286936 2R 16342723..16342771 492..444 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16343043..16343614 1242..671 2860 100 Minus
2R 25260384 2R 16344293..16344707 415..1 2075 100 Minus
2R 25260384 2R 16342679..16342982 1545..1242 1520 100 Minus
2R 25260384 2R 16343676..16343857 670..489 910 100 Minus
2R 25260384 2R 16342448..16342621 1717..1544 870 100 Minus
2R 25260384 2R 16343922..16343970 492..444 245 100 Minus
2R 25260384 2R 16344205..16344234 444..415 150 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:03:05 has no hits.

LD13649.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:03:45 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12230023..12230070 445..492 100 <- Minus
chr2R 12230306..12230335 415..444 100 <- Minus
chr2R 12228551..12228721 1545..1715 100 <- Minus
chr2R 12228781..12229082 1243..1544 99 <- Minus
chr2R 12229144..12229715 671..1242 99 <- Minus
chr2R 12229777..12229954 493..670 100 <- Minus
chr2R 12230395..12230808 1..414 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:06 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 1..1254 323..1576 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:27:21 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 1..1254 323..1576 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:42 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 1..1254 323..1576 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:19 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 1..1254 323..1576 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:31 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 51..1765 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:06 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 51..1765 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:21 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 15..1729 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:42 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 51..1765 1..1715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:19 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 15..1729 1..1715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:45 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16341251..16341421 1545..1715 100 <- Minus
2R 16341481..16341782 1243..1544 100 <- Minus
2R 16341844..16342415 671..1242 100 <- Minus
2R 16342477..16342654 493..670 100 <- Minus
2R 16342723..16342770 445..492 100 <- Minus
2R 16343006..16343035 415..444 100 <- Minus
2R 16343095..16343508 1..414 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:45 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16341251..16341421 1545..1715 100 <- Minus
2R 16341481..16341782 1243..1544 100 <- Minus
2R 16341844..16342415 671..1242 100 <- Minus
2R 16342477..16342654 493..670 100 <- Minus
2R 16342723..16342770 445..492 100 <- Minus
2R 16343006..16343035 415..444 100 <- Minus
2R 16343095..16343508 1..414 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:45 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16341251..16341421 1545..1715 100 <- Minus
2R 16341481..16341782 1243..1544 100 <- Minus
2R 16341844..16342415 671..1242 100 <- Minus
2R 16342477..16342654 493..670 100 <- Minus
2R 16342723..16342770 445..492 100 <- Minus
2R 16343006..16343035 415..444 100 <- Minus
2R 16343095..16343508 1..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:21 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12228756..12228926 1545..1715 100 <- Minus
arm_2R 12228986..12229287 1243..1544 100 <- Minus
arm_2R 12229349..12229920 671..1242 100 <- Minus
arm_2R 12229982..12230159 493..670 100 <- Minus
arm_2R 12230228..12230275 445..492 100 <- Minus
arm_2R 12230511..12230540 415..444 100 <- Minus
arm_2R 12230600..12231013 1..414 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:54 Download gff for LD13649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16342680..16342981 1243..1544 100 <- Minus
2R 16343043..16343614 671..1242 100 <- Minus
2R 16343676..16343853 493..670 100 <- Minus
2R 16343922..16343969 445..492 100 <- Minus
2R 16344205..16344234 415..444 100 <- Minus
2R 16344294..16344707 1..414 100   Minus
2R 16342450..16342620 1545..1715 100 <- Minus

LD13649.pep Sequence

Translation from 322 to 1575

> LD13649.pep
MYGTWGVFLGGILLLQVLQLSMGLDNGLALKPPMGWMSWERFRCITDCKL
YPDECISEKLFQRHADLLVSEGYADAGYEYVIIDDCWLEKNRDNDTQKLV
PDRKRFPNGLNALSDHIHNQGLKFGLYQDYGTNTCAGYPGVIKHMKLDAQ
TFADWDVDYVKLDGCYANISDMASGYPEFGRLLNETGRPMVYSCSWPAYQ
EDAGEMPDYESLKQHCNLWRNWDDIEDSLESLMQIIDYFAKNQDRIQPHG
GPGHWNDPDMLLLGNYGLSYDQSKLQMAIWAIMAAPLIMSNDLAAVRPEI
KAILQNRAVIAVDQDELGIQGRRVLSRNQIEVWKRPITPVTKSGHHSYAV
AFVSRRDDGAPYRIPFTVKELGLTNPKGYNVQDLYDASSKLGVFQSESQF
ITRVNPNGVTFYKFTAL*

LD13649.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11268-PA 417 GF11268-PA 1..417 1..417 1944 87.5 Plus
Dana\GF14131-PA 413 GF14131-PA 7..404 13..413 1319 60.1 Plus
Dana\GF23088-PA 419 GF23088-PA 21..416 23..417 1232 55.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22272-PA 417 GG22272-PA 1..417 1..417 2186 96.6 Plus
Dere\GG23972-PA 413 GG23972-PA 7..404 13..413 1314 60.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21921-PA 411 GH21921-PA 19..411 25..417 1765 80.9 Plus
Dgri\GH13861-PA 413 GH13861-PA 18..404 24..413 1309 61.8 Plus
Dgri\GH20142-PA 405 GH20142-PA 4..401 12..416 1110 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-PA 417 CG7997-PA 1..417 1..417 2262 100 Plus
CG7997-PB 417 CG7997-PB 1..417 1..417 2262 100 Plus
CG5731-PA 413 CG5731-PA 18..404 24..413 1320 61.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19628-PA 417 GI19628-PA 23..417 23..417 1701 78.3 Plus
Dmoj\GI19627-PA 413 GI19627-PA 23..413 23..417 1662 76.2 Plus
Dmoj\GI17617-PA 413 GI17617-PA 5..404 12..413 1295 59.3 Plus
Dmoj\GI24374-PA 423 GI24374-PA 25..417 23..414 1233 57.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11348-PA 427 GL11348-PA 1..427 1..417 1868 82.9 Plus
Dper\GL18985-PA 411 GL18985-PA 7..404 13..413 1296 58.9 Plus
Dper\GL12300-PA 424 GL12300-PA 26..420 23..416 1245 57.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20753-PA 417 GA20753-PA 25..417 25..417 1878 86.5 Plus
Dpse\GA27712-PA 411 GA27712-PA 7..404 13..413 1299 58.6 Plus
Dpse\GA26269-PA 424 GA26269-PA 15..420 12..416 1238 55.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20062-PA 417 GM20062-PA 1..417 1..417 2205 97.1 Plus
Dsec\GM11946-PA 413 GM11946-PA 7..404 13..413 1314 60.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25544-PA 417 GD25544-PA 1..417 1..417 2218 98.1 Plus
Dsim\GD22296-PA 413 GD22296-PA 7..404 13..413 1314 60.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14995-PA 419 GJ14995-PA 24..417 23..417 1809 83 Plus
Dvir\GJ18121-PA 409 GJ18121-PA 2..404 9..413 1306 60.1 Plus
Dvir\GJ24381-PA 443 GJ24381-PA 17..440 23..417 1217 54.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21691-PA 417 GK21691-PA 5..417 9..417 1825 80.1 Plus
Dwil\GK15268-PA 412 GK15268-PA 11..404 17..413 1292 59.2 Plus
Dwil\GK12921-PA 424 GK12921-PA 26..421 23..417 1247 56 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14068-PA 417 GE14068-PA 1..417 1..417 2197 97.1 Plus
Dyak\GE26351-PA 413 GE26351-PA 7..404 13..413 1312 60.6 Plus

LD13649.hyp Sequence

Translation from 322 to 1575

> LD13649.hyp
MYGTWGVFLGGILLLQVLQLSMGLDNGLALKPPMGWMSWERFRCITDCKL
YPDECISEKLFQRHADLLVSEGYADAGYEYVIIDDCWLEKNRDNDTQKLV
PDRKRFPNGLNALSDHIHNQGLKFGLYQDYGTNTCAGYPGVIKHMKLDAQ
TFADWDVDYVKLDGCYANISDMASGYPEFGRLLNETGRPMVYSCSWPAYQ
EDAGEMPDYESLKQHCNLWRNWDDIEDSLESLMQIIDYFAKNQDRIQPHG
GPGHWNDPDMLLLGNYGLSYDQSKLQMAIWAIMAAPLIMSNDLAAVRPEI
KAILQNRAVIAVDQDELGIQGRRVLSRNQIEVWKRPITPVTKSGHHSYAV
AFVSRRDDGAPYRIPFTVKELGLTNPKGYNVQDLYDASSKLGVFQSESQF
ITRVNPNGVTFYKFTAL*

LD13649.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-PA 417 CG7997-PA 1..417 1..417 2262 100 Plus
CG7997-PB 417 CG7997-PB 1..417 1..417 2262 100 Plus
CG5731-PA 413 CG5731-PA 18..404 24..413 1320 61.8 Plus