BDGP Sequence Production Resources |
Search the DGRC for LD13662
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 136 |
Well: | 62 |
Vector: | pBS SK- |
Associated Gene/Transcript | RpS9-RA |
Protein status: | LD13662.pep: gold |
Sequenced Size: | 732 |
Gene | Date | Evidence |
---|---|---|
RpS9-RD | 2009-06-18 | Manual selection by Ken Wan |
732 bp assembled on 2009-07-27
GenBank Submission: BT088955.1
> LD13662.complete AAAACCTGCTCGGTTGAATTGTCGGAACCATGGTGAACGGCCGCATACCC TCGGTCTTCTCGAAGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGC GCGTCTGGACCAGGAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACA AGCGCGAAGTGTGGCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCC GCTCGTGAGCTGCTGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCA GGGTAATGCCCTGCTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGT CCCGCATGAAGCTCGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTG GAGCGTCGTCTGCAGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCAT CCATCATGCTCGCGTCCTGATCCGTCAGCGTCACATTCGTGTCCGCAAGC AGGTGGTCAACATCCCGTCGTTCGTCGTGCGCCTGGACTCCCAGAAGCAC ATCGACTTCTCCCTGAAGTCGCCCTTCGGCGGCGGCCGTCCCGGTCGCGT CAAGAGGAAGAACCTGAAGAAGAACCAGGGCGGTGGCGGTGGAGCTGCTG AAGAGGAGGAGGACTAAGCAGTGGTAGCCAGCTGTAGCCAAGACAAATAC ATGGCGCAGACTTGATAAAAATCCGTTTGCTTTACACAAATAAATGTAAA AATACACGAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS9-RA | 922 | RpS9-RA | 106..815 | 1..710 | 3550 | 100 | Plus |
RpS9-RD | 967 | RpS9-RD | 169..872 | 7..710 | 3520 | 100 | Plus |
RpS9-RB | 928 | RpS9-RB | 38..476 | 1..439 | 2195 | 100 | Plus |
RpS9-RB | 928 | RpS9-RB | 660..928 | 440..708 | 1345 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9501755..9502024 | 708..439 | 1350 | 100 | Minus |
chr3L | 24539361 | chr3L | 9502917..9503166 | 256..7 | 1250 | 100 | Minus |
chr3L | 24539361 | chr3L | 9502330..9502517 | 439..252 | 940 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9501755..9502023 | 440..708 | 100 | <- | Minus |
chr3L | 9502330..9502516 | 253..439 | 100 | <- | Minus |
chr3L | 9502921..9503166 | 7..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RD | 1..588 | 30..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RD | 1..588 | 30..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 1..588 | 30..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 1..588 | 30..617 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 38..745 | 1..708 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 38..745 | 1..708 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 27..734 | 1..708 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS9-RA | 27..734 | 1..708 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9509890..9510158 | 440..708 | 100 | <- | Minus |
3L | 9510465..9510651 | 253..439 | 100 | <- | Minus |
3L | 9511056..9511301 | 7..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9509890..9510158 | 440..708 | 100 | <- | Minus |
3L | 9510465..9510651 | 253..439 | 100 | <- | Minus |
3L | 9511056..9511301 | 7..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9509890..9510158 | 440..708 | 100 | <- | Minus |
3L | 9510465..9510651 | 253..439 | 100 | <- | Minus |
3L | 9511056..9511301 | 7..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9502990..9503258 | 440..708 | 100 | <- | Minus |
arm_3L | 9503565..9503751 | 253..439 | 100 | <- | Minus |
arm_3L | 9504156..9504401 | 7..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9502990..9503258 | 440..708 | 100 | <- | Minus |
3L | 9503565..9503751 | 253..439 | 100 | <- | Minus |
3L | 9504156..9504401 | 7..252 | 100 | Minus |
Translation from 29 to 616
> LD13662.pep MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVV RLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGGGGAAEEEED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24655-PA | 195 | GF24655-PA | 1..195 | 1..195 | 994 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14025-PA | 195 | GG14025-PA | 1..195 | 1..195 | 998 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15146-PA | 195 | GH15146-PA | 1..195 | 1..195 | 980 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS9-PE | 195 | CG3395-PE | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PD | 195 | CG3395-PD | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PA | 195 | CG3395-PA | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12083-PA | 195 | GI12083-PA | 1..195 | 1..195 | 986 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20135-PA | 195 | GL20135-PA | 1..195 | 1..195 | 972 | 97.4 | Plus |
Dper\GL21280-PA | 195 | GL21280-PA | 1..195 | 1..195 | 972 | 97.4 | Plus |
Dper\GL17960-PA | 195 | GL17960-PA | 1..195 | 1..195 | 972 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28351-PA | 195 | GA28351-PA | 1..195 | 1..195 | 972 | 97.4 | Plus |
Dpse\GA29203-PA | 84 | GA29203-PA | 2..76 | 14..114 | 277 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24860-PA | 195 | GM24860-PA | 1..195 | 1..195 | 998 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12912-PA | 195 | GD12912-PA | 1..195 | 1..195 | 998 | 100 | Plus |
Dsim\GD17704-PA | 138 | GD17704-PA | 91..138 | 148..195 | 168 | 91.7 | Plus |
Dsim\GD17704-PA | 138 | GD17704-PA | 54..105 | 43..99 | 158 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13353-PA | 195 | GJ13353-PA | 1..195 | 1..195 | 994 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17575-PA | 195 | GK17575-PA | 1..195 | 1..195 | 994 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\RpS9-PA | 195 | GE21228-PA | 1..195 | 1..195 | 998 | 100 | Plus |
Translation from 29 to 616
> LD13662.hyp MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVV RLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGGGGAAEEEED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS9-PE | 195 | CG3395-PE | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PD | 195 | CG3395-PD | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PA | 195 | CG3395-PA | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |