Clone LD13710 Report

Search the DGRC for LD13710

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:137
Well:10
Vector:pBS SK-
Associated Gene/Transcriptnesd-RA
Protein status:LD13710.pep: gold
Preliminary Size:2042
Sequenced Size:1934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10722 2001-01-01 Release 2 assignment
CG10722 2003-01-01 Sim4 clustering to Release 3
CG10722 2003-03-27 Blastp of sequenced clone
CG10722 2008-04-29 Release 5.5 accounting
CG10722 2008-08-15 Release 5.9 accounting
CG10722 2008-12-18 5.12 accounting

Clone Sequence Records

LD13710.complete Sequence

1934 bp (1934 high quality bases) assembled on 2003-03-27

GenBank Submission: BT011118

> LD13710.complete
TTCATTCAAAAGGGGAAAATGGAAGTGTTTACCTTTGAGAAATCGTACTT
GGAGCGCCTAAAAGAAGCGGAGGCGGTGCTTTCGTGGGAGGGAGCCGTGA
TGCCCGCATCCCAGGTTCGATCCGAGTGGAAATCCTACGTCGAATTAAAA
ATTGAGCCTGCAGGATGGCAGGCAATTTGGAAAATTCCACGCGTTATTTG
CGAGGATCTGAAACTACGCTATCCCACCATTGTTTACGGCTACGTGGAGC
AGGTGATCTTTGACGAGCTCAAGGCGGTATTTGTGGTGACCGCCGTGCAG
GATAGCGATGTCCACCTGCCGGAGAGTAATGAAGTATCGCTAGTGGAGCT
GTGGCCCACTGTGCAGCAGGAGAACGCAGCTCTAAATGTGGATACCACCG
CTGAATGCATCGATCGTTTGCGGTTCTTCTATACGCATGTGTGGATGCCT
TGGGACAAGGACTACGACGATGATCGCGACTGGGTGCAACAGCATCTGCA
GGCTCGTATCCAACTAGTGTGCGATCTCAGCAAGAACCGACTGCCCCGTC
CGTTGGCCCTGCACATGCGCACCCTGCTCGCCGAAGCCAAATACATTCAG
CAGCGTCTGGACTACTTGGAACTGGATCTCAGTGATGCCGAGAGCGACGA
CGAGGCTGTGGAACTCAATGACAGCGTAGCAGAGCCCGCTAGAAAGCAAT
CTAAAGCGGGCAGTGCCAATGGCTGTCTCAATGTGTCCAGTCTGCCGGTT
ACAGATCTGATGTGCCTGCACCTGCGCATGGCCATCATAAGGAGCGAGTT
CGAGATCCTTGAAAATCCTGAAATGAGGCGAGCCTACAGCGAGCTACAGT
CTAATAGCCTCAAGCGGCTTCGCTGCTCCTCAGGAAGAACCAGACAATCG
GAGGATCTCTTGGTAGAGCGGAATTCCATAAGCCATGTGGTAACCTTGCC
GGGAAAACTGCAGCAGCAGCTGGAACTGCTAAAGCTGGCCCAGACGCTGG
TCAAGCCGGAATCGAAAGTGCAGCTGTCCAATACGTTGCAGGATGTCCTG
AGCATCTGTCAGAGCAACGATGATATTCTACTTTCGCCCGGCGAGCATAC
AATCAAATTCTTGGAGCACCTCAACGATAATGGCAGCCTAAGGGGACTCA
CTCAGCCGGAAGCCATACTAAGTCCTGCTGCAGATCTTTCCCTGCTGCCT
GTGGTGTGCTCGAGCGATGAGGATAGCACCCTGCTGGTCATTGATGGCGA
CTATACCTTGTCGGAATTGGTTTTGGATTGTCGTCATGTCCGTAGAGGGA
TCCTGCTGCGCAACGGAACGTTGACCATGCGAGGGTGTCGCTTGCTGGGC
GATGGGAGCTCCAGCACCCAAGAGGGTATTGTCTGCATGCCAGGCGCCAG
CGTGGAACTCAAAAGTTGCCTAATTGAAAACTTTGCTGTGGGTGTATCGA
TGCGACCGAAATCTAGTGCTGAGCTGGGAAGCGTCCAGTTTAAAACATGC
AAGACTGGACTGGAGTTGCTGGAGAAATCCGCTTCGGTTAATCTGCAGGG
TAGCAAGTGCAGTTTTGAAAACTGTGCTTTAGGAATCCTGGCCGATGGTT
TCGTATTGGGAGAGCAAAGAACAGAGAAGGTCCTGGTTCTAAACAAATTC
AGCGAACTTCAGCGTTACAACGAGGACAACTTGCTAGGTAATTGCAGCTT
TTACAACTGCAAGAAAAATGTGCGAGTTTTTAACGAATCCGGTCAGCTGC
TGGCTCAGCGATCGCATCAACAACTCCTCGAGGACGAACTCGGAGGGGAG
AACAAGGAAAATATTCAATTGGTCTAGGGGTACATTGTGTACACATAGTG
TTTATAAATTAAAATTTAGCGCTAACCGAAAATCCTATTGATATGCGTCA
ATAAATAATACGGGCAAAAAAAAAAAAAAAAAAA

LD13710.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10722-RB 2270 CG10722-RB 264..2181 1..1918 9590 100 Plus
CG10722-RA 2234 CG10722-RA 228..2145 1..1918 9590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20092846..20094348 162..1664 7455 99.7 Plus
chr2L 23010047 chr2L 20094411..20094662 1664..1915 1215 98.8 Plus
chr2L 23010047 chr2L 20092600..20092763 1..164 820 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20094437..20095939 162..1664 7515 100 Plus
2L 23513712 2L 20096002..20096256 1664..1918 1275 100 Plus
2L 23513712 2L 20094191..20094354 1..164 820 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20094437..20095939 162..1664 7515 100 Plus
2L 23513712 2L 20096002..20096256 1664..1918 1275 100 Plus
2L 23513712 2L 20094191..20094354 1..164 820 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:18:27 has no hits.

LD13710.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:31 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20092600..20092762 1..163 100 -> Plus
chr2L 20092848..20094348 164..1664 99 -> Plus
chr2L 20094412..20094662 1665..1915 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:47:53 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 1..1809 19..1827 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:49 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 1..1809 19..1827 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:42:52 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
nesd-RB 1..1809 19..1827 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:15 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 1..1809 19..1827 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:36 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
nesd-RB 1..1809 19..1827 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:01 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 228..2142 1..1915 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:49 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 228..2142 1..1915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:52 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
nesd-RB 97..2011 1..1915 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:15 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
CG10722-RA 228..2142 1..1915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:36 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
nesd-RB 97..2011 1..1915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:31 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20094191..20094353 1..163 100 -> Plus
2L 20094439..20095939 164..1664 100 -> Plus
2L 20096003..20096253 1665..1915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:31 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20094191..20094353 1..163 100 -> Plus
2L 20094439..20095939 164..1664 100 -> Plus
2L 20096003..20096253 1665..1915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:31 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20094191..20094353 1..163 100 -> Plus
2L 20094439..20095939 164..1664 100 -> Plus
2L 20096003..20096253 1665..1915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:52 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20094191..20094353 1..163 100 -> Plus
arm_2L 20094439..20095939 164..1664 100 -> Plus
arm_2L 20096003..20096253 1665..1915 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:21 Download gff for LD13710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20094439..20095939 164..1664 100 -> Plus
2L 20096003..20096253 1665..1915 100   Plus
2L 20094191..20094353 1..163 100 -> Plus

LD13710.hyp Sequence

Translation from 0 to 1826

> LD13710.hyp
FIQKGKMEVFTFEKSYLERLKEAEAVLSWEGAVMPASQVRSEWKSYVELK
IEPAGWQAIWKIPRVICEDLKLRYPTIVYGYVEQVIFDELKAVFVVTAVQ
DSDVHLPESNEVSLVELWPTVQQENAALNVDTTAECIDRLRFFYTHVWMP
WDKDYDDDRDWVQQHLQARIQLVCDLSKNRLPRPLALHMRTLLAEAKYIQ
QRLDYLELDLSDAESDDEAVELNDSVAEPARKQSKAGSANGCLNVSSLPV
TDLMCLHLRMAIIRSEFEILENPEMRRAYSELQSNSLKRLRCSSGRTRQS
EDLLVERNSISHVVTLPGKLQQQLELLKLAQTLVKPESKVQLSNTLQDVL
SICQSNDDILLSPGEHTIKFLEHLNDNGSLRGLTQPEAILSPAADLSLLP
VVCSSDEDSTLLVIDGDYTLSELVLDCRHVRRGILLRNGTLTMRGCRLLG
DGSSSTQEGIVCMPGASVELKSCLIENFAVGVSMRPKSSAELGSVQFKTC
KTGLELLEKSASVNLQGSKCSFENCALGILADGFVLGEQRTEKVLVLNKF
SELQRYNEDNLLGNCSFYNCKKNVRVFNESGQLLAQRSHQQLLEDELGGE
NKENIQLV*

LD13710.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
nesd-PA 602 CG10722-PA 1..602 7..608 3082 100 Plus
nesd-PB 602 CG10722-PB 1..602 7..608 3082 100 Plus

LD13710.pep Sequence

Translation from 18 to 1826

> LD13710.pep
MEVFTFEKSYLERLKEAEAVLSWEGAVMPASQVRSEWKSYVELKIEPAGW
QAIWKIPRVICEDLKLRYPTIVYGYVEQVIFDELKAVFVVTAVQDSDVHL
PESNEVSLVELWPTVQQENAALNVDTTAECIDRLRFFYTHVWMPWDKDYD
DDRDWVQQHLQARIQLVCDLSKNRLPRPLALHMRTLLAEAKYIQQRLDYL
ELDLSDAESDDEAVELNDSVAEPARKQSKAGSANGCLNVSSLPVTDLMCL
HLRMAIIRSEFEILENPEMRRAYSELQSNSLKRLRCSSGRTRQSEDLLVE
RNSISHVVTLPGKLQQQLELLKLAQTLVKPESKVQLSNTLQDVLSICQSN
DDILLSPGEHTIKFLEHLNDNGSLRGLTQPEAILSPAADLSLLPVVCSSD
EDSTLLVIDGDYTLSELVLDCRHVRRGILLRNGTLTMRGCRLLGDGSSST
QEGIVCMPGASVELKSCLIENFAVGVSMRPKSSAELGSVQFKTCKTGLEL
LEKSASVNLQGSKCSFENCALGILADGFVLGEQRTEKVLVLNKFSELQRY
NEDNLLGNCSFYNCKKNVRVFNESGQLLAQRSHQQLLEDELGGENKENIQ
LV*

LD13710.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15454-PA 604 GF15454-PA 1..604 1..602 2553 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21222-PA 602 GG21222-PA 1..602 1..602 2888 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13238-PA 602 GH13238-PA 1..601 1..599 2229 70.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
nesd-PA 602 CG10722-PA 1..602 1..602 3082 100 Plus
nesd-PB 602 CG10722-PB 1..602 1..602 3082 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12495-PA 604 GI12495-PA 1..603 1..599 2309 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26670-PA 603 GL26670-PA 1..600 1..599 2510 80.2 Plus
Dper\GL15104-PA 200 GL15104-PA 1..191 1..191 907 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10522-PA 603 GA10522-PA 1..600 1..599 2513 80.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17393-PA 602 GM17393-PA 1..602 1..602 3096 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24245-PA 466 GD24245-PA 154..466 290..602 1612 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17888-PA 604 GJ17888-PA 1..603 1..599 2333 74.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23804-PA 602 GK23804-PA 1..585 1..583 2092 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13297-PA 602 GE13297-PA 1..601 1..601 2972 94 Plus