Clone LD13846 Report

Search the DGRC for LD13846

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:138
Well:46
Vector:pBS SK-
Associated Gene/Transcriptl(1)G0334-RB
Protein status:LD13846.pep: gold
Preliminary Size:2200
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7010 2001-01-01 Release 2 assignment
CG7010 2003-01-01 Sim4 clustering to Release 3
CG7010 2003-05-20 Blastp of sequenced clone
l(1)G0334 2008-04-29 Release 5.5 accounting
l(1)G0334 2008-08-15 Release 5.9 accounting
l(1)G0334 2008-12-18 5.12 accounting

Clone Sequence Records

LD13846.complete Sequence

1980 bp (1980 high quality bases) assembled on 2003-05-20

GenBank Submission: BT010068

> LD13846.complete
TGATAAACTAATCTCGCTACCTTTTTTTCCGATTGTTTAACTTACAACGA
CGCGCGGCGGTGCGACTGAGACACCAGATATATAGCGTGCGATTCTAGAT
CCGGACAATCCGCATATAGAAAGCCCCCATTCACATCCAATTTCTGTCAG
TCGAACGAGAATAACACAGCGAAAATGTTGCGTACTCTGTCACGCGTTAG
CGAATTGCCCATTATTGTTAAGCAACTGCAAAAAGTACGTAATCCCAATC
CCGCTTTGCACCCACTAACATTTCTAATTGTTGTCACTAAAAATGCAATT
GAACAAATCCATTCGATAATGAAAACACTAAAAGCGTTGCCATAACAACA
ACAACAACAACATCATCATCAGCGGATGTCGGATACTTAGCAACAACAAC
AACAACAGCAGCATCGATATCATCAGGAATGGGAGATATTCATCGTCGTT
TTTCGGTTTATTCCAGAATGCAGCCCAAGCAGGTGTTTCGAAAACCAACA
ATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGCCCTTCAAGCTGCAC
CGCCTGGACGAAGGACCCGCCACGGAAGTGAAGCTGACCAAGGATCAGGC
CCTCAAGTACTACACACAGATGCAGACGATCCGTCGGTTGGAGACGGCCG
CCGGTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGTAT
TCCGGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGATGT
GGACAACATCATCTCGGCGTACCGTGTCCACGGATGGACCTACCTGATGG
GCGTCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGC
TGTGCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTCTA
CGGAGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTG
GCTTGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCTAC
GGTGATGGTGCCGCCAATCAAGGACAGGTGTTCGAGGCTTACAACATGGC
CTACCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTACG
GAATGGGCACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATACC
CGCGGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTGGC
CGTGCGCAGCGCCACCGAGTTCGCCATCAACTATGTGAACACTCACGGAC
CTTTGGTGATGGAGACGAACACGTACCGATACTCTGGACACTCCATGTCC
GATCCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCA
GAAGCGTGATCCCATCACCTCCTTCAAGGAGCTGTGCATCGAGCTGGGTC
TGATTACCACCGATGAAGTTAAGGCCATCGATCTGAAGGTACGCAAGGAG
GTCGACGAGGCCACCGCCTTCGCCAAGTCCGATGCCGAGCTGGGCGTGAG
CCACCTCTGGACGGACGTGTACTCCAACAATCTGGAGCCCAAGCTGCGCG
GCACCATCGCCTACGATATTGATCACATCCAGGAGCGCAAGGGCGTCAAT
CACTAAGTCATCGGGCCAACGAATCTGATTCGGGAACTCACAAGAACCTT
AAACGAAACAAGAAAACCGAACAGCAAACACAAATCACTGACAGACAGAC
AAGAAGACACAATAACTCAGAAACTTGGACACAAGCGAAATCTCTAGATC
ATAAGCCGAAAGTTGAACGATGAGAACCCCGTAGAACGGAACGGATCCGA
AGAGACCCACAAAAAGCTTAGCTAATCGGAGCACTCCAACCACACATCGT
AGCGCACCACATAACTCTGGGGTACTGCATTGGATATTATATTGCGAACG
TGTTCAATAAGGATAAAGCGAGGTGTAAATTGTTGAAAATATAAAAATCT
AGAAAAATTAAAAAAAAAAAAAAAAAAAAA

LD13846.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0334-RB 2024 l(1)G0334-RB 59..2019 1..1961 9805 100 Plus
l(1)G0334-RC 2048 l(1)G0334-RC 304..1935 330..1961 8145 99.9 Plus
l(1)G0334-RA 1939 l(1)G0334-RA 321..1815 467..1961 7475 100 Plus
l(1)G0334-RC 2048 l(1)G0334-RC 75..308 1..234 1170 100 Plus
l(1)G0334-RA 1939 l(1)G0334-RA 87..320 1..234 1170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4596337..4596903 535..1101 2760 99.1 Plus
chrX 22417052 chrX 4597369..4597906 1422..1959 2690 100 Plus
chrX 22417052 chrX 4595146..4595675 1..535 2490 98.5 Plus
chrX 22417052 chrX 4596977..4597301 1100..1424 1610 99.7 Plus
chrX 22417052 chrX 4599247..4599578 990..1321 265 72 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4703554..4704120 535..1101 2835 100 Plus
X 23542271 X 4704586..4705125 1422..1961 2700 100 Plus
X 23542271 X 4702358..4702892 1..535 2675 100 Plus
X 23542271 X 4704194..4704518 1100..1424 1625 100 Plus
X 23542271 X 4706459..4706790 990..1321 265 72 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4711652..4712218 535..1101 2835 100 Plus
X 23527363 X 4712684..4713223 1422..1961 2700 100 Plus
X 23527363 X 4710456..4710990 1..535 2675 100 Plus
X 23527363 X 4712292..4712616 1100..1424 1625 100 Plus
X 23527363 X 4714557..4714627 990..1060 160 81.6 Plus
Blast to na_te.dros performed on 2019-03-16 21:42:44 has no hits.

LD13846.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:41 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4595146..4595487 1..341 99 == Plus
chrX 4595566..4595675 426..535 100 -> Plus
chrX 4596338..4596902 536..1100 99 -> Plus
chrX 4596978..4597300 1101..1423 99 -> Plus
chrX 4597371..4597906 1424..1959 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:03 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 56..1332 330..1606 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:48 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 56..1332 330..1606 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:50 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 56..1332 330..1606 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:49 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 56..1332 330..1606 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:19 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 56..1332 330..1606 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:40:16 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RB 1..1957 3..1959 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:47 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RB 1..1957 3..1959 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:50 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RB 34..1992 1..1959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:50 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RB 1..1957 3..1959 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:19 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RB 34..1992 1..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:41 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702358..4702892 1..535 100 -> Plus
X 4703555..4704119 536..1100 100 -> Plus
X 4704195..4704517 1101..1423 100 -> Plus
X 4704588..4705123 1424..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:41 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702358..4702892 1..535 100 -> Plus
X 4703555..4704119 536..1100 100 -> Plus
X 4704195..4704517 1101..1423 100 -> Plus
X 4704588..4705123 1424..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:41 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702358..4702892 1..535 100 -> Plus
X 4703555..4704119 536..1100 100 -> Plus
X 4704195..4704517 1101..1423 100 -> Plus
X 4704588..4705123 1424..1959 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:50 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4596391..4596925 1..535 100 -> Plus
arm_X 4597588..4598152 536..1100 100 -> Plus
arm_X 4598228..4598550 1101..1423 100 -> Plus
arm_X 4598621..4599156 1424..1959 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:49:17 Download gff for LD13846.complete
Subject Subject Range Query Range Percent Splice Strand
X 4710456..4710990 1..535 100 -> Plus
X 4711653..4712217 536..1100 100 -> Plus
X 4712293..4712615 1101..1423 100 -> Plus
X 4712686..4713221 1424..1959 100   Plus

LD13846.pep Sequence

Translation from 619 to 1605

> LD13846.pep
MQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISA
YRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIV
GAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLP
VIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATE
FAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPIT
SFKELCIELGLITTDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDV
YSNNLEPKLRGTIAYDIDHIQERKGVNH*

LD13846.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22274-PA 399 GF22274-PA 72..399 1..328 1741 97.6 Plus
Dana\GF15055-PA 403 GF15055-PA 76..399 1..324 1106 62 Plus
Dana\GF22275-PA 520 GF22275-PA 82..401 1..320 1071 60.3 Plus
Dana\GF18476-PA 439 GF18476-PA 128..412 29..306 280 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18722-PA 440 GG18722-PA 113..440 1..328 1778 100 Plus
Dere\GG18723-PA 480 GG18723-PA 70..390 1..321 1079 60.4 Plus
Dere\GG16874-PA 439 GG16874-PA 128..408 29..302 271 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12828-PA 399 GH12828-PA 72..399 1..328 1693 94.5 Plus
Dgri\GH20215-PA 513 GH20215-PA 66..384 1..319 1105 62.4 Plus
Dgri\GH18279-PA 439 GH18279-PA 127..412 28..306 298 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pdha-PB 328 CG7010-PB 1..328 1..328 1744 100 Plus
Pdha-PD 399 CG7010-PD 72..399 1..328 1744 100 Plus
Pdha-PA 399 CG7010-PA 72..399 1..328 1744 100 Plus
Pdha-PC 443 CG7010-PC 116..443 1..328 1744 100 Plus
CG7024-PA 479 CG7024-PA 70..390 1..321 1075 61.1 Plus
CG8199-PA 439 CG8199-PA 128..388 29..278 262 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14910-PA 399 GI14910-PA 72..399 1..328 1672 94.2 Plus
Dmoj\GI14124-PA 420 GI14124-PA 91..419 1..328 1187 63.5 Plus
Dmoj\GI14911-PA 461 GI14911-PA 35..353 1..319 1093 60.8 Plus
Dmoj\GI24087-PA 435 GI24087-PA 124..405 29..303 302 31.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13094-PA 399 GL13094-PA 72..399 1..328 1709 95.4 Plus
Dper\GL18702-PA 414 GL18702-PA 88..412 1..325 1106 64 Plus
Dper\GL13095-PA 540 GL13095-PA 92..410 1..319 1089 62.1 Plus
Dper\GL22326-PA 439 GL22326-PA 128..412 29..306 279 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20028-PA 399 GA20028-PA 72..399 1..328 1701 95.1 Plus
Dpse\GA25763-PA 414 GA25763-PA 88..412 1..325 1115 64.3 Plus
Dpse\GA20040-PA 533 GA20040-PA 92..410 1..319 1086 61.8 Plus
Dpse\GA20891-PA 439 GA20891-PA 128..412 29..306 279 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12361-PA 441 GM12361-PA 114..441 1..328 1777 100 Plus
Dsec\GM12362-PA 475 GM12362-PA 69..389 1..321 1097 61.1 Plus
Dsec\GM23814-PA 439 GM23814-PA 128..388 29..278 254 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16702-PA 392 GD16702-PA 72..392 1..328 1712 97.3 Plus
Dsim\GD16703-PA 476 GD16703-PA 70..390 1..321 1096 61.1 Plus
Dsim\GD18623-PA 439 GD18623-PA 128..388 29..278 254 30.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18942-PA 399 GJ18942-PA 72..399 1..328 1661 93.3 Plus
Dvir\GJ17759-PA 420 GJ17759-PA 94..419 4..328 1179 63.5 Plus
Dvir\GJ18943-PA 548 GJ18943-PA 81..399 1..319 1121 62.7 Plus
Dvir\GJ10905-PA 437 GJ10905-PA 126..405 29..301 286 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25306-PA 474 GK25306-PA 147..474 1..328 1752 97 Plus
Dwil\GK15549-PA 430 GK15549-PA 104..426 1..323 1169 65.3 Plus
Dwil\GK25307-PA 632 GK25307-PA 89..409 1..321 1103 61.7 Plus
Dwil\GK11824-PA 439 GK11824-PA 128..412 29..306 283 29.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16361-PA 438 GE16361-PA 111..438 1..328 1775 100 Plus
Dyak\GE16362-PA 485 GE16362-PA 70..390 1..321 1077 59.5 Plus
Dyak\GE25960-PA 439 GE25960-PA 128..408 29..302 270 29.9 Plus

LD13846.hyp Sequence

Translation from 619 to 1605

> LD13846.hyp
MQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISA
YRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIV
GAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLP
VIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATE
FAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPIT
SFKELCIELGLITTDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDV
YSNNLEPKLRGTIAYDIDHIQERKGVNH*

LD13846.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0334-PB 328 CG7010-PB 1..328 1..328 1744 100 Plus
l(1)G0334-PD 399 CG7010-PD 72..399 1..328 1744 100 Plus
l(1)G0334-PA 399 CG7010-PA 72..399 1..328 1744 100 Plus
l(1)G0334-PC 443 CG7010-PC 116..443 1..328 1744 100 Plus
CG7024-PA 479 CG7024-PA 70..390 1..321 1075 61.1 Plus