Clone LD13852 Report

Search the DGRC for LD13852

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:138
Well:52
Vector:pBS SK-
Associated Gene/TranscriptSin3A-RB
Protein status:LD13852.pep: gold
Sequenced Size:7460

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8815 2003-01-01 Sim4 clustering to Release 3
CG8815 2004-10-13 Blastp of sequenced clone
Sin3A 2008-04-29 Release 5.5 accounting
Sin3A 2008-08-15 Release 5.9 accounting
Sin3A 2008-12-18 5.12 accounting

Clone Sequence Records

LD13852.complete Sequence

7460 bp assembled on 2007-04-17

GenBank Submission: BT016112

> LD13852.complete
CACACAAACCGAGTTGGGATTTCGTTGTAATTGCTGGTCATTTTTCACGG
CTGTGCGACTAATTAAATTTAACAAGAGAGCCTTAATAAATAAGTGCTAA
AGACCAGACGCAGCGCGCAGTAATTCAAATCATCTAGAAGATCTCGTAAA
ACAAAATTGATATTCAGAAAGAACTCCAAACGCTACGTGGCAGAGGCGAA
TCACCGGCGCAGCAACACCAGCAGCAGATAACCAGCCGTCAGTCCAATTT
CTCTACCTTAGAACTCGAGCGCATTTGCCGCTTGCGGGGCGACCAAATGC
ATAGACAACATATGTCGCATTCACGAGCAGTCCAAGATCAAGAGTTGCGA
CCCCGACCGTTTGTTGCATATTACATACGCTCATAGAGGGCGGCCACTCA
CCTAGAGCAGCCAGAGTCCTTGCACTTGGGCAGGGATCCAGGGAGCAACA
AAGTGCTTAGAAAGAAGAAGCAGCAGCACAGGATTATACGCTCCGCCGAG
GACAGAGCAACAAAAAAGATGATGAAACGCACTCGCGTAGACGAGGTGCA
ATTTGGCACACGACCCGTTCCTCAGACCTCCGGAGGTGTGGGCGTTGGTG
TCGTCGGCGTAACTGGAGGTGGGCCAACATCCGGCGGCGGTGGCACTGCT
ACTGTGGGCGTCAATACGACGGGCGTTACCATTGGTACCGTCGTGCCCAG
TGCTCATAACGCCACCATCAGCGGGATCGGTTCCATTCACCATCGCATCC
TTACTCCACAGCATGGAGGAGCACAAACCATTGCCTATTTGCCGTCCACC
ACGCCGACGGCTACGAATTTGAAGACCACAACCTCGATTGTGGATAGCAC
TACCGCTGGAGGACCAGTAGGAGCAGGAGCACAGGTGGCCGTAGGAGTTG
GCTCTGCAGCCGGCGGAGGAGGCGTGGTGGTCTCCACAGGGAGCACGGGA
ACGCAAACATTACAGTATACAACATCTTATAGTGTGGCTTCGATACAGGC
TGGTGGAACTCTGAAAGCCAACACAGCGGATGGCGCGAACACGGTACAGA
TTCATGTCACAGGAGGAGGAGCTGCAAACAATCCTGCCAGTGCACAGACT
GTTTCCAGCAGCTCACAAACGGGCACAATCCGTCAGCGTACAATCAGCGG
CACCCAGACAGTGGCCACTGCAGTGGGTAATCTAGCCACGATTTCCCAGC
AACAACCGGTTCAACAATCACCTTTGGGCAAGGCCCAAACGCCTCCATCG
TCCGTGGTTGCCAACAGTATCCCAGTGGGTGGAACCACCCCACCACAAGG
ACAGTCGGGAAATGCCACGCCACGCTTAAAAGTGGAGGATGCGTTGAGCT
ACCTGGACCAAGTAAAGTACCAGTATGCAGACCAGCCGCAAATCTACAAC
AACTTCCTCGACATAATGAAGGAATTCAAGTCGCACTGCATCGACACACC
CGGAGTGATTGAGCGAGTCTCCACACTCTTCAAGGGGCACACAGAGCTGA
TATACGGCTTCAACATGTTCTTACCGCCGGGTTACAAGATCGAAATTCAT
TCGGATGCTCTTGGCTGTTCGGTGCCGGTGGTTTCGATGCCCTCACCACC
GGGAGCGCCAACGAGCACAGGAACGGTGCATATGCTCACCGGAAATAGTT
CGATGTCCGGTGCCGGACATATCGCCATCAAGACGACCAATGCTGCGACT
TTAACACCGGCAGCAGGGGCTGGAGCAGCGGCCGCAGCAGCAGCTGTGGC
TCAGATTCAATCCGCTGGAGCTGTAAATCTAATGACCCACGGCGGAGCCT
CGCTTACCCAGACCACTATTCATGCATTGCAACAGGCGACGCCTCCTCAA
TCACAATCTCCAGGCGGAGGTCATGTCCACGTGAGTGTAACAAACTCTAC
GGCAGCAAACGCCGTAGTGCCCGGACAGCCAGGCATCTCCGTATCGGCGC
ACAATGTACCGCAGAACTACTCGAGAGATCGAGAAAGGGCCACCATAACA
CCTACTGGGCAAGTGGCTGGAGCAGCGGCAAACGTGAATGCGTCTGCTAG
TATAGTTGTCGGTGGACCTCCAACGCCCAATTCTCTAAGTGAGCTTAGCC
CTCATGGAGGAGCAGGAGGTGGGCCAGGTGCGGGAGCGGCGCAGCACAAT
CTGCATCACATCCAGCAGGCGCATCAATCGATTTTGCTTGGGGAGACGGG
ACAGCAGAATCAGCCGGTGGAGTTCAATCACGCCATAACCTATGTAAATA
AGATCAAGAATCGTTTCCAAAACCAGCCGGCCAAGTACAAGAAATTCCTC
GAAATTCTGCACGATTATCAGAGGGAGCAAAAGGTGATGAAGGAGGGCAG
CCTGAACCAGGGTAAAATGCTCACCGAGCAGGAGGTATACACGCAGGTGG
CTAAGCTTTTTGGCCAGGATGAGGATTTGCTTAGAGAGTTTGGCCAGTTT
CTTCCTGATGCCACCAACCACCAGTCCGGGCAGTACATGTCCAAGTCAGC
GTCTGTGCACAATGACCATGGCAAGCGTCCCACGGCTACTTTAAGCGGTG
GAGCTCACATAACCATGTCATCTGCTTCGCCAGCGCCAAGTGGATCCCCT
CTGCATTTGGGTGCAACGACTCTTCCGCAGATCGACAAAAGCGCCCATGC
AGCGGCCATAGGAAACCTTTCGGCGGTGAACACTAGTGTCAGCATTAAGA
CGTACAATAATAATCAGCAACAGCAGAATCATGTGATCGGTTCAGGGCTG
AATGCGACGCGGAACGATATTCTCTTTGAGAAGGACTATCACGCGGGTCT
GCAGCAGCAAGCGCATCAGCGAGGAGCTGGAGTTGGAGGCCATCATCATT
TGGCCGGGACTGCAGCGGGCGCCAATATCGGACGGCCTGGAGTGGGAGCC
AGCGTGATGGTGTCGTACGATAAAGAGCATCGAAATAATCATCATGTACA
AAAGTACGTTGGCCACGCGCCAAACCAGAATCTAACGCATGGTCATAACG
CAAAGAAATCACCAAGTTATGGCATTCCTTCGGTGATTGGTTCCATGCCG
CACATTTCGGACAATTCGCTCGACCGCAGTTCACCGGGAATTAGTTACGC
CACGCCACCATTGCCCTCTGGTCCACATGGACAGCATAACTCTGGTTCAG
CTACGAGGAGGCCGGGTGATGACAGTTTAGTCGGACACTATGCTAGTGGA
GCGCCGCCTGCTAAGCGACCGAAGCCTTATTGTCGTGATGTCAGCTTTTC
CGAAGCATCGAGCAAGTGCACCATCTCCGACGCCGCGTTCTTTGACAAGG
TGCGAAAGGCGTTGAGAAGTCCAGAGGTCTACGACAACTTCCTGCGATGC
CTGACCCTTTTTAACCAGGAAATTGTCTCCAAAACGGAACTTCTTGGTCT
GGTATCACCGTTCTTGATGAAGTTCCCCGACCTGCTGAGATGGTTCACCG
ACTTTCTGGGACCGCCCTCTGGTCAACCTGCTGGAGGATTGATTGACGGC
ATGCCCTTAGCCGCAACGCAACGTCAGGGAGGTGGAAGCAGTAATAGTTC
CCATGATCGAGGTACCAGTCACCAGAGTGCCGCCGAGTATGTCCAGGATG
TGGATCTGTCTTCTTGCAAGCGGCTGGGTGCATCCTATTGTGCTTTGCCG
CAGTCCACAGTACCTAAGAAGTGCAGCGGACGGACGGCTCTCTGCCGGGA
AGTGCTCAACGACAAATGGGTATCGTTCCCGACGTGGGCCAGCGAGGACT
CCACTTTTGTTACATCGCGAAAAACTCAGTTCGAGGAGACAATTTACAGA
ACGGAGGACGAGCGATTCGAGCTGGACCTGGTCATCGAGGTTAATAGTGC
CACGATTCGAGTGCTGGAGAACTTACAGAAGAAAATGTCACGAATGTCCA
CCGAGGAATTGAGCAAATTCCATCTGGACGATCATCTGGGCGGCACATCT
CAAACGATACACCAGCGGGCCATTCATCGCATCTACGGCGACAAGTCGGG
AGAGATAATCACGGGAATGAAGAAAAATCCGTTTGTGGCGGTGCCTATTG
TACTGAAGCGACTGAAAGTCAAGGAGGAGGAGTGGCGAGAAGCGCAAAAG
ACCTTCAATAAGCAATGGCGGGAACAGAACGAGAAGTACTACCTCAAGTC
TCTCGATCACCAGGCCATCAACTTTAAGCCCAACGACATGAAAGCCCTGC
GCTCAAAGAGTCTGTTTAACGAAATCGAGACGCTGTACGATGAGCGGCAC
GACCAAGAGGACGACGCCATGGAACCGTTTGGGCCGCATCTGGTGCTGCC
GTACAAGGATAAAACCATTCTGGACGATGCCGCCAACCTGCTGATTCATC
ATGTGAAGCGTCAGACTGGCATCCAGAAGCAGGAGAAGCAAAAGATTAAG
CAGATCATCCGACAATTTGTGCCTGACCTTTTCTTCGCGCCGCGACAGCC
ACTAAGCGATGACGAACGCGATGACGCCTTTCCATTTTTGGTAGATGACA
ATACGAAAATGGACGTGGACTCGCCACTGGGTCGCACGGAGTCTTCGACT
CGAAATGCCAAGAGTACGCCCAGTGAAAGTGCCTCTCCGGCGCGTAGCAA
TGCAAGCACTAGCAGCGTAACACCAGCGGGAATTAAGAAAGAGACTGATG
ACTCGAAAGCGACGACAGGATCTTTTGCACCAGCGTCCTCGGCAACGGCA
TCTTCAGCGACGCCTGTGGACGATGCTACGCCATCAACATCCTCAGCAGC
GGCGGCAGCATCAGCGGCATCGTCATCAACTGTTTCAGGAACCGAAGGCA
AGCCAAAGGATGACCCCCTATCGTCGCACAAGGAAGAAGGAGCCGGTAGC
ACCAGCTCTGGAGTTGCCACGAGTCCCAGGCAAGCCCAAGACACTGCAGG
AGCAGGCGTCGATGTGGAAATCAAACTGGAACATCCTGCGGACTTTTCCA
ATCCAAAGCTTCTACCGCCGCACGCGCACGGGCAACGCGAAGACGAATCC
TACACGCTGTTCTTCGCTAACAACAATTGGTATTTATTCCTGCGGCTACA
TGCGATTCTCTGCGACCGTCTGCATGTTATGTATGAAAGAGCGCGTTTGC
TGGCCATCGAGGAGGAGCGCTGTAGGGTGAATCGAAGGGAGAGCACAGCC
ACGGCGCTGCGGCTAAAGCCCAAACCGGAGATTCAAGTTGAAGACTACTA
CCCCACCTTCCTTGATATGCTCAAGAACGTCCTAGACGGCAACATGGACT
CGAATACGTTCGAGGACACGATGCGTGAAATGTTTGGCATTTATGCCTAC
ATCTCTTTCACGCTGGATAAGGTTGTCTCCAATGCTGTTCGCCAGCTGCA
ATATTGTGTCACAGAACGAGCCGCACTGGATTGTGTAGAGCTGTTTGCAA
CGGAGCAAAGGCGTGGCTGCACCGGAGGATTCTGTCGAGATGCGCACAAG
ACATTTGACAGGGAGATGTCGTATCAGCGGAAAGCTGAGAGCATTCTCAA
CGAGGAGAATTGCTTCAAAGTGTACATTTACAAAATCGATTGCCGTGTAA
CCATAGAGCTGCTTGATTCGGAGCCCGAGGAAGTCGATAAGCCGGCTGCG
TTGAAGGCCCAGAAGTTCAGCAAGTATGTAGAGCGGTTGGCGAATCCTGC
GCTCGGCGGTGGTGGCAATACTGGCCGCTCCGATTCGGCGCTCGGCAATG
ACAGCGTTGTAGATGGGTCCGATATCAAGACGGAGGCGGACGAAGATACT
GCCGAGTTGCGCTACAGAGAAGGTGGAATCGGAGGAGCAGGCAAGGCGCG
CTTTTTGGTGCGCAACAAGCGGAGATCAAAGCTGCTTGAGGAGCAAGTGC
GTCAGTTGTTTGAACATAGGCGGAATCGGATTGAGCAGCATGGTACTGCG
GCCTCACTTGAACCCATCTCCGTTGACAGTGCCATTTCAAGCAACAGCAC
CACCGGCGGTGGCGGCAGCGGCACTAATAACAACAATAATAATAATAATA
ATAACAACAGCTGGGGCGGCAAACGTCTGGAGAGGCTGGGCGCCCCACAG
GTGGGCTTGGCCGAGCAATACGCCTTTAATGATCGCGACGAGATCAGCAC
AAATATCAGCAACGGGCGATGTTTTGTGACCAGCAAGAATCTCAAGCTAC
TTAAGTACGATGCAGTGCGTCGTGCCAAGAAGAGTCATTGCCGCGTAACT
CAGGCGAAATACGCTCACTTCCAAACGTACGTTAACAAGTGGCTTCAGCA
ACATGTCAGCGAGCAACAGCAGCAGAACTGCGTCGACTGGCTGCTGGGCA
AGACGGCAGACCAAATCAATGCCAGCGGCTGGGGATCCGCCAGCAAAACC
AAGACGGTACAGCAGAAGGATACTTCGAAGACACCGTATCGCATCTACAA
CAGATACAGAGTGGTGCAGAGTGCAGTAAGCGGCGGTTTGATGAGTGCCA
CTGCTCCAACTCCAGATGGTTCAGTTCCGGCGGTCAATTCCGCGCCATCA
GGCTCAGTTTCAACGGTGAACAATGTACAGGGCTCGGCGGCAGTATCCTC
AACTTCCCACTCGATGTGCAACAGTAGCATTTTGTCCGCGGACTCCACCA
CCAATACCAATGCGTCAGCACAGCAGCAGCAGCATTGCAACAGTGCAGCA
GCTGCAACAACACCGAATGCAGAGGCACTGCAACAGGTGCGACCCATGGA
GAGCTAACCGACGGGAATGGGAGCAACAACGGCAGTGGTCGCTGCATGGC
CAGATTCTTCATTCACATGACGACAATGAGAAGATGTGGGATGAATTGCC
TGCATTGAAATAAATAGTGTTTTAAATGTGATACCAGTTCCTCGACGCGG
TCATCGAGATTGCAGCTATACCAACGCGCGATCGACTGTTTAATGTCCGG
CATGGCATTGGGCTCTGGAAATTGATTGATGAACGAAGGAAAGCTCTTTT
TCATATTGTACAAAAAGTCATTTAATCTTAGGCGAAAGTGCTCCTAAATA
AGAATTTTATAGTCTTACGTTGCATAAATTTTAGAATTAATTTTACGACG
GCAGCGTCCTGTTTTATTGATGCGCTTTTAGAATTAAGATATAAAGTTTA
TACGCCTAGAGCCACATACACCTTAAACACAATCGCAAGACCACAATTTA
AGTCACGGATATTTTTAACGATTTTGCACTAGAAACCGATCGAGACAGTT
GTGCTAGTAACTAGGAACCAGAACACGTCTGTTTAGTGTTTTAAGATTTT
TTAAAACCAAGCTCTTTTACTTTATCATAAGTGTAACGTATTTTTAATAC
AAAACAAACAAAACACCCACATACAAACCGTGTACAATTCCTTGTGAATA
CTATTGTTTATATATTTTACGCGTTTAAGGTTATTAAGTTAAATTGTAAA
AATGTATTGCGCAGATATTAAAACAAAAGTTTATCAAAAGTGAAAAAAAA
AAAAAAAAAA

LD13852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-RC 7462 Sin3A-RC 19..7462 1..7444 37220 100 Plus
Sin3A-RA 8051 Sin3A-RA 565..6163 158..5756 27995 100 Plus
Sin3A.a 8166 Sin3A.a 597..6195 158..5756 27995 100 Plus
Sin3A-RA 8051 Sin3A-RA 6362..8051 5755..7444 8450 100 Plus
Sin3A.a 8166 Sin3A.a 6450..8139 5755..7444 8450 100 Plus
Sin3A-RA 8051 Sin3A-RA 8..164 1..157 785 100 Plus
Sin3A.a 8166 Sin3A.a 40..196 1..157 785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8469562..8471104 3799..2257 7715 100 Minus
chr2R 21145070 chr2R 8471174..8472456 2258..976 6415 100 Minus
chr2R 21145070 chr2R 8462513..8463774 7442..6181 6280 99.8 Minus
chr2R 21145070 chr2R 8472528..8473345 975..158 4075 99.9 Minus
chr2R 21145070 chr2R 8467388..8467904 4992..4476 2585 100 Minus
chr2R 21145070 chr2R 8463841..8464268 6182..5755 2140 100 Minus
chr2R 21145070 chr2R 8468474..8468851 4476..4099 1890 100 Minus
chr2R 21145070 chr2R 8466995..8467326 5323..4992 1660 100 Minus
chr2R 21145070 chr2R 8468911..8469219 4100..3792 1530 99.7 Minus
chr2R 21145070 chr2R 8466402..8466629 5756..5529 1140 100 Minus
chr2R 21145070 chr2R 8466688..8466896 5528..5320 1045 100 Minus
chr2R 21145070 chr2R 8480005..8480161 157..1 785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:00:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12582289..12583831 3799..2257 7715 100 Minus
2R 25286936 2R 12583901..12585183 2258..976 6415 100 Minus
2R 25286936 2R 12575238..12576501 7444..6181 6320 100 Minus
2R 25286936 2R 12585255..12586072 975..158 4090 100 Minus
2R 25286936 2R 12580115..12580631 4992..4476 2585 100 Minus
2R 25286936 2R 12576568..12576995 6182..5755 2140 100 Minus
2R 25286936 2R 12581202..12581579 4476..4099 1890 100 Minus
2R 25286936 2R 12579722..12580053 5323..4992 1660 100 Minus
2R 25286936 2R 12581639..12581947 4100..3792 1530 99.7 Minus
2R 25286936 2R 12579129..12579356 5756..5529 1140 100 Minus
2R 25286936 2R 12579415..12579623 5528..5320 1045 100 Minus
2R 25286936 2R 12592729..12592885 157..1 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12583488..12585030 3799..2257 7715 100 Minus
2R 25260384 2R 12585100..12586382 2258..976 6415 100 Minus
2R 25260384 2R 12576437..12577700 7444..6181 6320 100 Minus
2R 25260384 2R 12586454..12587271 975..158 4090 100 Minus
2R 25260384 2R 12581314..12581830 4992..4476 2585 100 Minus
2R 25260384 2R 12577767..12578194 6182..5755 2140 100 Minus
2R 25260384 2R 12582401..12582778 4476..4099 1890 100 Minus
2R 25260384 2R 12580921..12581252 5323..4992 1660 100 Minus
2R 25260384 2R 12582838..12583146 4100..3792 1530 99.6 Minus
2R 25260384 2R 12580328..12580555 5756..5529 1140 100 Minus
2R 25260384 2R 12580614..12580822 5528..5320 1045 100 Minus
2R 25260384 2R 12593928..12594084 157..1 785 100 Minus
Blast to na_te.dros performed 2019-03-15 20:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2406 4689..4792 151 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6915 4578..4796 130 55.7 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 671..718 1750..1703 123 72.9 Minus

LD13852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:11:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8466402..8466629 5529..5756 100 <- Minus
chr2R 8466688..8466894 5322..5528 100 <- Minus
chr2R 8462513..8463772 6183..7442 96 <- Minus
chr2R 8463841..8464266 5757..6182 92 <- Minus
chr2R 8466997..8467326 4992..5321 100 <- Minus
chr2R 8467389..8467903 4477..4991 100 <- Minus
chr2R 8468474..8468849 4101..4476 100 <- Minus
chr2R 8468911..8469211 3800..4100 100 <- Minus
chr2R 8469562..8471102 2259..3799 100 <- Minus
chr2R 8471174..8472456 976..2258 100 <- Minus
chr2R 8472528..8473345 158..975 99 <- Minus
chr2R 8480005..8480161 1..157 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:39:16 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RB 1..6189 519..6707 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:47 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RB 1..6189 519..6707 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:49:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 1..6189 519..6707 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:20:08 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RB 1..6189 519..6707 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:15 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 1..6189 519..6707 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:13 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 8..7449 1..7442 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:46 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 8..7449 1..7442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 33..7474 1..7442 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:20:09 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 8..7449 1..7442 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:15 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 33..7474 1..7442 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12581202..12581577 4101..4476 100 <- Minus
2R 12581639..12581939 3800..4100 100 <- Minus
2R 12582289..12583829 2259..3799 100 <- Minus
2R 12575240..12576499 6183..7442 100 <- Minus
2R 12576568..12576993 5757..6182 100 <- Minus
2R 12579129..12579356 5529..5756 100 <- Minus
2R 12579415..12579621 5322..5528 100 <- Minus
2R 12579724..12580053 4992..5321 100 <- Minus
2R 12580116..12580630 4477..4991 100 <- Minus
2R 12583901..12585183 976..2258 100 <- Minus
2R 12585255..12586072 158..975 100 <- Minus
2R 12592729..12592885 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12581202..12581577 4101..4476 100 <- Minus
2R 12581639..12581939 3800..4100 100 <- Minus
2R 12582289..12583829 2259..3799 100 <- Minus
2R 12575240..12576499 6183..7442 100 <- Minus
2R 12576568..12576993 5757..6182 100 <- Minus
2R 12579129..12579356 5529..5756 100 <- Minus
2R 12579415..12579621 5322..5528 100 <- Minus
2R 12579724..12580053 4992..5321 100 <- Minus
2R 12580116..12580630 4477..4991 100 <- Minus
2R 12583901..12585183 976..2258 100 <- Minus
2R 12585255..12586072 158..975 100 <- Minus
2R 12592729..12592885 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12581202..12581577 4101..4476 100 <- Minus
2R 12581639..12581939 3800..4100 100 <- Minus
2R 12582289..12583829 2259..3799 100 <- Minus
2R 12575240..12576499 6183..7442 100 <- Minus
2R 12576568..12576993 5757..6182 100 <- Minus
2R 12579129..12579356 5529..5756 100 <- Minus
2R 12579415..12579621 5322..5528 100 <- Minus
2R 12579724..12580053 4992..5321 100 <- Minus
2R 12580116..12580630 4477..4991 100 <- Minus
2R 12583901..12585183 976..2258 100 <- Minus
2R 12585255..12586072 158..975 100 <- Minus
2R 12592729..12592885 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8462745..8464004 6183..7442 100 <- Minus
arm_2R 8464073..8464498 5757..6182 100 <- Minus
arm_2R 8466634..8466861 5529..5756 100 <- Minus
arm_2R 8466920..8467126 5322..5528 100 <- Minus
arm_2R 8467229..8467558 4992..5321 100 <- Minus
arm_2R 8467621..8468135 4477..4991 100 <- Minus
arm_2R 8468707..8469082 4101..4476 100 <- Minus
arm_2R 8469144..8469444 3800..4100 100 <- Minus
arm_2R 8469794..8471334 2259..3799 100 <- Minus
arm_2R 8471406..8472688 976..2258 100 <- Minus
arm_2R 8472760..8473577 158..975 100 <- Minus
arm_2R 8480234..8480390 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:55:07 Download gff for LD13852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12582838..12583138 3800..4100 100 <- Minus
2R 12582401..12582776 4101..4476 100 <- Minus
2R 12576439..12577698 6183..7442 100 <- Minus
2R 12577767..12578192 5757..6182 100 <- Minus
2R 12580328..12580555 5529..5756 100 <- Minus
2R 12580614..12580820 5322..5528 100 <- Minus
2R 12580923..12581252 4992..5321 100 <- Minus
2R 12581315..12581829 4477..4991 100 <- Minus
2R 12583488..12585028 2259..3799 100 <- Minus
2R 12585100..12586382 976..2258 100 <- Minus
2R 12586454..12587271 158..975 100 <- Minus
2R 12593928..12594084 1..157 100   Minus

LD13852.hyp Sequence

Translation from 518 to 6706

> LD13852.hyp
MMKRTRVDEVQFGTRPVPQTSGGVGVGVVGVTGGGPTSGGGGTATVGVNT
TGVTIGTVVPSAHNATISGIGSIHHRILTPQHGGAQTIAYLPSTTPTATN
LKTTTSIVDSTTAGGPVGAGAQVAVGVGSAAGGGGVVVSTGSTGTQTLQY
TTSYSVASIQAGGTLKANTADGANTVQIHVTGGGAANNPASAQTVSSSSQ
TGTIRQRTISGTQTVATAVGNLATISQQQPVQQSPLGKAQTPPSSVVANS
IPVGGTTPPQGQSGNATPRLKVEDALSYLDQVKYQYADQPQIYNNFLDIM
KEFKSHCIDTPGVIERVSTLFKGHTELIYGFNMFLPPGYKIEIHSDALGC
SVPVVSMPSPPGAPTSTGTVHMLTGNSSMSGAGHIAIKTTNAATLTPAAG
AGAAAAAAAVAQIQSAGAVNLMTHGGASLTQTTIHALQQATPPQSQSPGG
GHVHVSVTNSTAANAVVPGQPGISVSAHNVPQNYSRDRERATITPTGQVA
GAAANVNASASIVVGGPPTPNSLSELSPHGGAGGGPGAGAAQHNLHHIQQ
AHQSILLGETGQQNQPVEFNHAITYVNKIKNRFQNQPAKYKKFLEILHDY
QREQKVMKEGSLNQGKMLTEQEVYTQVAKLFGQDEDLLREFGQFLPDATN
HQSGQYMSKSASVHNDHGKRPTATLSGGAHITMSSASPAPSGSPLHLGAT
TLPQIDKSAHAAAIGNLSAVNTSVSIKTYNNNQQQQNHVIGSGLNATRND
ILFEKDYHAGLQQQAHQRGAGVGGHHHLAGTAAGANIGRPGVGASVMVSY
DKEHRNNHHVQKYVGHAPNQNLTHGHNAKKSPSYGIPSVIGSMPHISDNS
LDRSSPGISYATPPLPSGPHGQHNSGSATRRPGDDSLVGHYASGAPPAKR
PKPYCRDVSFSEASSKCTISDAAFFDKVRKALRSPEVYDNFLRCLTLFNQ
EIVSKTELLGLVSPFLMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAAT
QRQGGGSSNSSHDRGTSHQSAAEYVQDVDLSSCKRLGASYCALPQSTVPK
KCSGRTALCREVLNDKWVSFPTWASEDSTFVTSRKTQFEETIYRTEDERF
ELDLVIEVNSATIRVLENLQKKMSRMSTEELSKFHLDDHLGGTSQTIHQR
AIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWREAQKTFNKQW
REQNEKYYLKSLDHQAINFKPNDMKALRSKSLFNEIETLYDERHDQEDDA
MEPFGPHLVLPYKDKTILDDAANLLIHHVKRQTGIQKQEKQKIKQIIRQF
VPDLFFAPRQPLSDDERDDAFPFLVDDNTKMDVDSPLGRTESSTRNAKST
PSESASPARSNASTSSVTPAGIKKETDDSKATTGSFAPASSATASSATPV
DDATPSTSSAAAAASAASSSTVSGTEGKPKDDPLSSHKEEGAGSTSSGVA
TSPRQAQDTAGAGVDVEIKLEHPADFSNPKLLPPHAHGQREDESYTLFFA
NNNWYLFLRLHAILCDRLHVMYERARLLAIEEERCRVNRRESTATALRLK
PKPEIQVEDYYPTFLDMLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLD
KVVSNAVRQLQYCVTERAALDCVELFATEQRRGCTGGFCRDAHKTFDREM
SYQRKAESILNEENCFKVYIYKIDCRVTIELLDSEPEEVDKPAALKAQKF
SKYVERLANPALGGGGNTGRSDSALGNDSVVDGSDIKTEADEDTAELRYR
EGGIGGAGKARFLVRNKRRSKLLEEQVRQLFEHRRNRIEQHGTAASLEPI
SVDSAISSNSTTGGGGSGTNNNNNNNNNNNSWGGKRLERLGAPQVGLAEQ
YAFNDRDEISTNISNGRCFVTSKNLKLLKYDAVRRAKKSHCRVTQAKYAH
FQTYVNKWLQQHVSEQQQQNCVDWLLGKTADQINASGWGSASKTKTVQQK
DTSKTPYRIYNRYRVVQSAVSGGLMSATAPTPDGSVPAVNSAPSGSVSTV
NNVQGSAAVSSTSHSMCNSSILSADSTTNTNASAQQQQHCNSAAAATTPN
AEALQQVRPMES*

LD13852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-PE 2062 CG8815-PE 1..2062 1..2062 10678 100 Plus
Sin3A-PB 2062 CG8815-PB 1..2062 1..2062 10678 100 Plus
Sin3A-PC 2062 CG8815-PC 1..2062 1..2062 10678 100 Plus
Sin3A-PG 2066 CG8815-PG 1..2066 1..2062 10663 99.8 Plus
Sin3A-PH 2060 CG8815-PH 1..2060 1..2062 10615 99.5 Plus

LD13852.pep Sequence

Translation from 518 to 6706

> LD13852.pep
MMKRTRVDEVQFGTRPVPQTSGGVGVGVVGVTGGGPTSGGGGTATVGVNT
TGVTIGTVVPSAHNATISGIGSIHHRILTPQHGGAQTIAYLPSTTPTATN
LKTTTSIVDSTTAGGPVGAGAQVAVGVGSAAGGGGVVVSTGSTGTQTLQY
TTSYSVASIQAGGTLKANTADGANTVQIHVTGGGAANNPASAQTVSSSSQ
TGTIRQRTISGTQTVATAVGNLATISQQQPVQQSPLGKAQTPPSSVVANS
IPVGGTTPPQGQSGNATPRLKVEDALSYLDQVKYQYADQPQIYNNFLDIM
KEFKSHCIDTPGVIERVSTLFKGHTELIYGFNMFLPPGYKIEIHSDALGC
SVPVVSMPSPPGAPTSTGTVHMLTGNSSMSGAGHIAIKTTNAATLTPAAG
AGAAAAAAAVAQIQSAGAVNLMTHGGASLTQTTIHALQQATPPQSQSPGG
GHVHVSVTNSTAANAVVPGQPGISVSAHNVPQNYSRDRERATITPTGQVA
GAAANVNASASIVVGGPPTPNSLSELSPHGGAGGGPGAGAAQHNLHHIQQ
AHQSILLGETGQQNQPVEFNHAITYVNKIKNRFQNQPAKYKKFLEILHDY
QREQKVMKEGSLNQGKMLTEQEVYTQVAKLFGQDEDLLREFGQFLPDATN
HQSGQYMSKSASVHNDHGKRPTATLSGGAHITMSSASPAPSGSPLHLGAT
TLPQIDKSAHAAAIGNLSAVNTSVSIKTYNNNQQQQNHVIGSGLNATRND
ILFEKDYHAGLQQQAHQRGAGVGGHHHLAGTAAGANIGRPGVGASVMVSY
DKEHRNNHHVQKYVGHAPNQNLTHGHNAKKSPSYGIPSVIGSMPHISDNS
LDRSSPGISYATPPLPSGPHGQHNSGSATRRPGDDSLVGHYASGAPPAKR
PKPYCRDVSFSEASSKCTISDAAFFDKVRKALRSPEVYDNFLRCLTLFNQ
EIVSKTELLGLVSPFLMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAAT
QRQGGGSSNSSHDRGTSHQSAAEYVQDVDLSSCKRLGASYCALPQSTVPK
KCSGRTALCREVLNDKWVSFPTWASEDSTFVTSRKTQFEETIYRTEDERF
ELDLVIEVNSATIRVLENLQKKMSRMSTEELSKFHLDDHLGGTSQTIHQR
AIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWREAQKTFNKQW
REQNEKYYLKSLDHQAINFKPNDMKALRSKSLFNEIETLYDERHDQEDDA
MEPFGPHLVLPYKDKTILDDAANLLIHHVKRQTGIQKQEKQKIKQIIRQF
VPDLFFAPRQPLSDDERDDAFPFLVDDNTKMDVDSPLGRTESSTRNAKST
PSESASPARSNASTSSVTPAGIKKETDDSKATTGSFAPASSATASSATPV
DDATPSTSSAAAAASAASSSTVSGTEGKPKDDPLSSHKEEGAGSTSSGVA
TSPRQAQDTAGAGVDVEIKLEHPADFSNPKLLPPHAHGQREDESYTLFFA
NNNWYLFLRLHAILCDRLHVMYERARLLAIEEERCRVNRRESTATALRLK
PKPEIQVEDYYPTFLDMLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLD
KVVSNAVRQLQYCVTERAALDCVELFATEQRRGCTGGFCRDAHKTFDREM
SYQRKAESILNEENCFKVYIYKIDCRVTIELLDSEPEEVDKPAALKAQKF
SKYVERLANPALGGGGNTGRSDSALGNDSVVDGSDIKTEADEDTAELRYR
EGGIGGAGKARFLVRNKRRSKLLEEQVRQLFEHRRNRIEQHGTAASLEPI
SVDSAISSNSTTGGGGSGTNNNNNNNNNNNSWGGKRLERLGAPQVGLAEQ
YAFNDRDEISTNISNGRCFVTSKNLKLLKYDAVRRAKKSHCRVTQAKYAH
FQTYVNKWLQQHVSEQQQQNCVDWLLGKTADQINASGWGSASKTKTVQQK
DTSKTPYRIYNRYRVVQSAVSGGLMSATAPTPDGSVPAVNSAPSGSVSTV
NNVQGSAAVSSTSHSMCNSSILSADSTTNTNASAQQQQHCNSAAAATTPN
AEALQQVRPMES*

LD13852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11469-PA 2110 GF11469-PA 1..2110 1..2062 7886 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22567-PA 2060 GG22567-PA 1..2060 1..2062 9420 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19841-PA 2179 GH19841-PA 1..1873 1..1785 5632 66.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-PE 2062 CG8815-PE 1..2062 1..2062 10678 100 Plus
Sin3A-PB 2062 CG8815-PB 1..2062 1..2062 10678 100 Plus
Sin3A-PC 2062 CG8815-PC 1..2062 1..2062 10678 100 Plus
Sin3A-PG 2066 CG8815-PG 1..2066 1..2062 10663 99.8 Plus
Sin3A-PH 2060 CG8815-PH 1..2060 1..2062 10615 99.5 Plus
Sin3A-PD 1751 CG8815-PD 1..1747 1..1747 9049 99.9 Plus
Sin3A-PJ 1786 CG8815-PJ 1..1746 1..1746 9048 100 Plus
Sin3A-PI 1747 CG8815-PI 1..1746 1..1746 9048 100 Plus
Sin3A-PF 1776 CG8815-PF 1..1746 1..1746 9048 100 Plus
Sin3A-PA 1776 CG8815-PA 1..1746 1..1746 9048 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20429-PA 2102 GI20429-PA 1..1384 1..1359 4308 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21286-PA 2123 GL21286-PA 1..2123 1..2062 7122 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21341-PA 2127 GA21341-PA 1..2127 1..2062 7124 73.7 Plus
Dpse\GA21341-PB 1841 GA21341-PB 1..1839 1..1757 6283 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20350-PA 2055 GM20350-PA 1..2055 1..2062 10732 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25829-PA 2057 GD25829-PA 1..2057 1..2062 10813 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20103-PA 2173 GJ20103-PA 1..1375 1..1339 4490 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23082-PA 2111 GK23082-PA 1..2009 1..1969 6721 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13437-PA 2053 GE13437-PA 1..2053 1..2062 9405 93.4 Plus