Clone LD13889 Report

Search the DGRC for LD13889

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:138
Well:89
Vector:pBS SK-
Associated Gene/TranscriptCG14803-RA
Protein status:LD13889.pep: gold
Sequenced Size:3398

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14803 2007-09-25 DGC5 pick
CG14803 2008-04-29 Picked prior to 5.5

Clone Sequence Records

LD13889.complete Sequence

3398 bp assembled on 2009-11-30

GenBank Submission: BT100320.1

> LD13889.complete
CCCGACTGCACCATGGACTACGACCTTTTTCAGTCGGATGACGAGGAGAT
CCTGGCTACCTTCATACAGGCGACACAGAAGCAGGAAACCCTGAGCGCGC
AAATAGACGTGGACGATAGCGAAGAGGACCTAGTCGACGGTCTACACTTG
CCCGAGTTCAACTGCAGTGGCCGAGACACTCTGAAGAGCCAACTGTGCGA
GGGAGGCTTTCTGGGGAATGGCTACGCCCAATTGGATCCGCCCCGCTCTC
GCCTGGATTATCTCTGTTTTGACTTTGCTCCGGCTCAATTAGCGGTTGGC
GCGGTAAGAAACTACCTGTACGGCGAGGCCTGTAAGAATGTGCAGAAGCT
GTTAACCGTCGTGATGGGCCAGCAACACCTGCAGGCCACGGCCGCCTCTA
TGAACTCTGGTTGGTATAGAGTGCGCCAGCAGGTCACACACTTCTACCAT
CTGATGCTGCTCCTACGAGGCAATGAGCTGCTGCCTTCACATTTTCTTGA
TGGGTTTCGACAATTGCTCAACGATCAGCTGGATGCGGATACCTGGAAGG
TTTTGTATTTTGCGGAGCACAACAAGGGAAACGACTGCCAGGCGCCGGCG
TATCACCTGTATCACGGCGTACTGGAGTGGCGTTTTCTGGACCTGCATAT
ACTGTACGCCTCTGGGAATGATCAAGCGTTCCTAGGGCAGCTGGAGCGCA
CACTCGACGATCTGATCGTTTGTGCTGGACATCACTACCGCAGCAAACAT
CGCTCGGAGCTCATCCATTCCTCGCCGTTCATGTGTCGCTGCAACAAGGA
GCTGTGGCTGCTGCTGAAACGTCTTATTCCCAAATGGCTGGGAGAACGGG
AGCTAGACTTTTGGACTCTATTCCACAAGGCCATGCAGAGGCACAAGTCA
CTCCACTTCCAGGGTGAGAGCAATGCAATTTCTCTGGCATACCACGAACT
CTATTCCTGGTTGAGGCTAGGACTGGCCCGCTTGGACGAATACAACAGTG
AGGGTTGGTACCAGCCGGATCACTCGCCGCTCACTGCGGCACCAGAAAGC
TTCCAAACTGCCAGTCTGCTTAAGCAATTTCTGGCGAGCCAGCCGGACGA
ACAGCAGCGGCGGGTCTACCTAATTCAACTCTCTCCCCTTCAACTGCAGC
TGGGCAAGCCGGATACTGATGTCCTGTGCCAGCTGTGGGAGTACTTTCAC
CGATCCCTCAACTGCAATTTTAGTGTGGGAACTGAGCTAGATCAGCTGCC
GCTTACCTGTTCCAATGGGTCGGCCTACGTCGATCGCTACAACAAACTGC
TGTCTAAGTCGCATATAGAAGATTTGAATCTGAGCAGTTTCACCATGTAC
GCGTGGATGCTGGGCAAAACCTTGAAGCTTTTACCATCGCAGGGCAGAAG
CAACCAACGTCAGAAACTACTCGGCCGCATATTCAGCAAGTTTAGTGCCG
CGAAACTTTTGGCTCTGAATGAGCCTGGTATTCACCATGTGATCGAGCTG
TTTCTGTGCCTGCTGCTCTGCCACGAAGATCTCAGCGAGTTGGCGCCCAA
GCTGCGCGAAATGTTGCTCTGCCTGGCCCTGGAAAAACTGCCTCCGGTGC
GAAGGATTCTCGTGGCCAAGGGACACATGGCCCTGCTGCTTCTGCATGCC
CAGCATCGCCTATCTATGGATGACTATGTGAGCAAGCTGCTCAACCAGTT
GGCCACCATTCGCAATGATGCAGAGGTGGGCGCCATTTATGTGGGCAGCC
TTCAAGCCATCTTTAATCTGGCGGATGACTTCAACCGCGGCGAGCAGCAG
CTTCTCGGGCCATGGCTGGCACATTACGTCGAAAAGTGTGGGCAGGCATC
GCAGGATCGCGTATGGCAGACGCTTCACAATTTAATCCTCCGTCTCAGCG
AGCGGAGAGCTGTGGCTGGCAATGCGAGTGGCATCAAGGAGGCACTTCAA
CAGCACATAATGCCACTGGTGAGGACCCAATACGTTAGTAGCCATAGCTC
ATGGCTTCCAAAGCTAGCGGCTAACTTCATCGCCCTGGAGAATAATGGGG
ACAAACTGCTACTGGGCTTCCTGCAGGGACCAGAACCCATCAATATGGCT
GCTTCTGCTCAGTTGTTGCTCCAGGTGTTGGAAGACGGAGGGCGACCTGC
CAGCTCCACCATTCTTCAGGTCTGGGTGAAGTCTCTGGTCCTCCTAAACG
CACAACACGAATCTGTATTGGCTTTAATGCCCCATGTCACACAGCTAGAG
GAGTTCCGACTTCTGGCCATTGATCCCACCTCTTTGGAGGGCGGGCGCGA
GCCTCTCTGCGCCTTCTTTGGAGCTCTGGGAAGGCGTGCCCAGCAAGAGG
AGGCTGCTGCCCACGTCCGTATGCAGTTGAGCCACAAACTGCATGCCTAT
GTAAATCATTTCGAGCTATGGCTACCCCCGGATCGAAGCCGATCGGAACT
CGGTTCCCGGTTCTACAGCTTCCTAGCCATTGTCATCTATAATTGTTCCA
CTCTAGCGTACGTGCGATCCAAGCCGAGCTGCTTCTTCCACCTGGCCATG
GTGCGGTTCCTGCTCACCACGCAGTTGCAGGCAGGAGTGCCGCCCGAAGG
TCGCCTTCCACAAGTGGTTCACAAGATTTTCCCAGTGTTGCTGCAAGGCA
TTGGTCGACTGCCTTACCGCACGGACGCATACGTGGCCAAGACTTTGGAG
CAACTAGTTCAGCACTGGACGCCGCACTTTAGCTTCTCATCCAACGCCAA
GCTGGTGGCCCGTCCATATGCCACCCTCCTCCAGGCGGATGTAGATGGAG
AGCTGGCGCAGTTTGTGCTTCAGCTCCTCGTTACCCAGTTTTTGGTGGTC
CAGCGGCGGAGGGCAGGACAGCATGCGGGCTTGGTGATCACTATAATGCA
GCAACTGATAGAGAGCACTGGCAAAGAGCAGGAAGAACAGCTGCTAACCG
TTTTGCGCGGCGTGCACATCCCGCTGCTGGAACACGTAATGTTCGTGGAC
GAAGTGGACCTCAGTCGCAACCAAGTGTTTGGACTTTATAAAGTGCTTAT
ATCGCACGATGCCTACAAGCGATCACAGGCGGTCAGGGATATGTGCTCCA
ATCACTTGCGATCCCTCGCCGAAAAGCACCTGGCCCACTGCACTTACTTT
TACTTCCAGATGCTGATCAACCTGGCAGAGCTGGCGCCGGATCTAGTGGC
TCCCATCCTATCCTTTATAAGGGAGCAGGCAGAGCAGGTGGAGCTAAAAC
GCGGCGCTGGAGAAGATGTGGGCATACGCAAGTGCTTGCAGCGACTCCAA
AAGGTCTTGAGCAGGGTTTAGGCTCCTCATGGCTTCTTTTGTACATATAA
GGATTCTCAATAAAATGTTAGGCATTCTAAAAAAAAAAAAAAAAAAAA

LD13889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14803-RA 3480 CG14803-RA 124..3480 1..3357 16785 100 Plus
CG14803.a 3440 CG14803.a 124..3440 1..3321 16520 99.8 Plus
CG14803.b 3431 CG14803.b 441..3431 333..3323 14955 100 Plus
CG14803.b 3431 CG14803.b 124..440 1..317 1585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1763786..1766251 913..3378 12315 100 Plus
chrX 22417052 chrX 1763140..1763730 332..922 2940 99.8 Plus
chrX 22417052 chrX 1762754..1763085 1..332 1660 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1869943..1872414 913..3384 12345 100 Plus
X 23542271 X 1869297..1869887 332..922 2940 99.8 Plus
X 23542271 X 1868911..1869242 1..332 1660 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1878041..1880512 913..3384 12345 99.9 Plus
X 23527363 X 1877395..1877985 332..922 2940 99.8 Plus
X 23527363 X 1877009..1877340 1..332 1660 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:06:22 has no hits.

LD13889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:07:06 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1762754..1763085 1..332 100 -> Plus
chrX 1763141..1763721 333..913 100 -> Plus
chrX 1763787..1766251 914..3378 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-30 14:11:36 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 1..3309 13..3321 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:25:45 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 1..3309 13..3321 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:27 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 1..3309 13..3321 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:13 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 1..3309 13..3321 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-30 14:11:36 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 124..3444 1..3321 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:25:45 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 124..3444 1..3321 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:27 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 42..3419 1..3378 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:13 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
CG14803-RA 42..3419 1..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:07:06 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
X 1868911..1869242 1..332 100 -> Plus
X 1869298..1869878 333..913 100 -> Plus
X 1869944..1872408 914..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:07:06 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
X 1868911..1869242 1..332 100 -> Plus
X 1869298..1869878 333..913 100 -> Plus
X 1869944..1872408 914..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:07:06 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
X 1868911..1869242 1..332 100 -> Plus
X 1869298..1869878 333..913 100 -> Plus
X 1869944..1872408 914..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:27 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1762944..1763275 1..332 100 -> Plus
arm_X 1763331..1763911 333..913 100 -> Plus
arm_X 1763977..1766441 914..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:12:32 Download gff for LD13889.complete
Subject Subject Range Query Range Percent Splice Strand
X 1877009..1877340 1..332 100 -> Plus
X 1877396..1877976 333..913 100 -> Plus
X 1878042..1880506 914..3378 100   Plus

LD13889.hyp Sequence

Translation from 0 to 3320

> LD13889.hyp
PDCTMDYDLFQSDDEEILATFIQATQKQETLSAQIDVDDSEEDLVDGLHL
PEFNCSGRDTLKSQLCEGGFLGNGYAQLDPPRSRLDYLCFDFAPAQLAVG
AVRNYLYGEACKNVQKLLTVVMGQQHLQATAASMNSGWYRVRQQVTHFYH
LMLLLRGNELLPSHFLDGFRQLLNDQLDADTWKVLYFAEHNKGNDCQAPA
YHLYHGVLEWRFLDLHILYASGNDQAFLGQLERTLDDLIVCAGHHYRSKH
RSELIHSSPFMCRCNKELWLLLKRLIPKWLGERELDFWTLFHKAMQRHKS
LHFQGESNAISLAYHELYSWLRLGLARLDEYNSEGWYQPDHSPLTAAPES
FQTASLLKQFLASQPDEQQRRVYLIQLSPLQLQLGKPDTDVLCQLWEYFH
RSLNCNFSVGTELDQLPLTCSNGSAYVDRYNKLLSKSHIEDLNLSSFTMY
AWMLGKTLKLLPSQGRSNQRQKLLGRIFSKFSAAKLLALNEPGIHHVIEL
FLCLLLCHEDLSELAPKLREMLLCLALEKLPPVRRILVAKGHMALLLLHA
QHRLSMDDYVSKLLNQLATIRNDAEVGAIYVGSLQAIFNLADDFNRGEQQ
LLGPWLAHYVEKCGQASQDRVWQTLHNLILRLSERRAVAGNASGIKEALQ
QHIMPLVRTQYVSSHSSWLPKLAANFIALENNGDKLLLGFLQGPEPINMA
ASAQLLLQVLEDGGRPASSTILQVWVKSLVLLNAQHESVLALMPHVTQLE
EFRLLAIDPTSLEGGREPLCAFFGALGRRAQQEEAAAHVRMQLSHKLHAY
VNHFELWLPPDRSRSELGSRFYSFLAIVIYNCSTLAYVRSKPSCFFHLAM
VRFLLTTQLQAGVPPEGRLPQVVHKIFPVLLQGIGRLPYRTDAYVAKTLE
QLVQHWTPHFSFSSNAKLVARPYATLLQADVDGELAQFVLQLLVTQFLVV
QRRRAGQHAGLVITIMQQLIESTGKEQEEQLLTVLRGVHIPLLEHVMFVD
EVDLSRNQVFGLYKVLISHDAYKRSQAVRDMCSNHLRSLAEKHLAHCTYF
YFQMLINLAELAPDLVAPILSFIREQAEQVELKRGAGEDVGIRKCLQRLQ
KVLSRV*

LD13889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14803-PA 1102 CG14803-PA 1..1102 5..1106 5737 100 Plus
CG14803-PB 1097 CG14803-PB 1..1097 5..1106 5690 99.5 Plus

LD13889.pep Sequence

Translation from 0 to 3320

> LD13889.pep
PDCTMDYDLFQSDDEEILATFIQATQKQETLSAQIDVDDSEEDLVDGLHL
PEFNCSGRDTLKSQLCEGGFLGNGYAQLDPPRSRLDYLCFDFAPAQLAVG
AVRNYLYGEACKNVQKLLTVVMGQQHLQATAASMNSGWYRVRQQVTHFYH
LMLLLRGNELLPSHFLDGFRQLLNDQLDADTWKVLYFAEHNKGNDCQAPA
YHLYHGVLEWRFLDLHILYASGNDQAFLGQLERTLDDLIVCAGHHYRSKH
RSELIHSSPFMCRCNKELWLLLKRLIPKWLGERELDFWTLFHKAMQRHKS
LHFQGESNAISLAYHELYSWLRLGLARLDEYNSEGWYQPDHSPLTAAPES
FQTASLLKQFLASQPDEQQRRVYLIQLSPLQLQLGKPDTDVLCQLWEYFH
RSLNCNFSVGTELDQLPLTCSNGSAYVDRYNKLLSKSHIEDLNLSSFTMY
AWMLGKTLKLLPSQGRSNQRQKLLGRIFSKFSAAKLLALNEPGIHHVIEL
FLCLLLCHEDLSELAPKLREMLLCLALEKLPPVRRILVAKGHMALLLLHA
QHRLSMDDYVSKLLNQLATIRNDAEVGAIYVGSLQAIFNLADDFNRGEQQ
LLGPWLAHYVEKCGQASQDRVWQTLHNLILRLSERRAVAGNASGIKEALQ
QHIMPLVRTQYVSSHSSWLPKLAANFIALENNGDKLLLGFLQGPEPINMA
ASAQLLLQVLEDGGRPASSTILQVWVKSLVLLNAQHESVLALMPHVTQLE
EFRLLAIDPTSLEGGREPLCAFFGALGRRAQQEEAAAHVRMQLSHKLHAY
VNHFELWLPPDRSRSELGSRFYSFLAIVIYNCSTLAYVRSKPSCFFHLAM
VRFLLTTQLQAGVPPEGRLPQVVHKIFPVLLQGIGRLPYRTDAYVAKTLE
QLVQHWTPHFSFSSNAKLVARPYATLLQADVDGELAQFVLQLLVTQFLVV
QRRRAGQHAGLVITIMQQLIESTGKEQEEQLLTVLRGVHIPLLEHVMFVD
EVDLSRNQVFGLYKVLISHDAYKRSQAVRDMCSNHLRSLAEKHLAHCTYF
YFQMLINLAELAPDLVAPILSFIREQAEQVELKRGAGEDVGIRKCLQRLQ
KVLSRV*

LD13889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21202-PA 1116 GF21202-PA 1..1116 5..1104 4341 74.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12885-PA 1104 GG12885-PA 1..1104 5..1106 5334 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24298-PA 1131 GH24298-PA 1..1125 5..1103 3332 61 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14803-PA 1102 CG14803-PA 1..1102 5..1106 5737 100 Plus
CG14803-PB 1097 CG14803-PB 1..1097 5..1106 5690 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16115-PA 1119 GI16115-PA 1..1116 5..1103 3505 63.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20341-PA 1114 GL20341-PA 1..1113 5..1103 4118 71.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13259-PA 1114 GA13259-PA 1..1113 5..1103 4065 70.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19172-PA 907 GM19172-PA 1..895 5..897 4464 95.1 Plus
Dsec\GM19173-PA 112 GM19173-PA 1..112 966..1106 453 68.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16573-PA 196 GD16573-PA 1..196 911..1106 989 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16395-PA 1137 GJ16395-PA 1..1134 5..1103 3511 63.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18497-PA 1123 GK18497-PA 1..1122 5..1103 3393 60.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16713-PA 1105 GE16713-PA 1..1105 5..1106 5351 91.1 Plus