Clone LD13915 Report

Search the DGRC for LD13915

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:139
Well:15
Vector:pBS SK-
Associated Gene/TranscriptGPHR-RA
Protein status:LD13915.pep: gold
Preliminary Size:1521
Sequenced Size:1841

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8090 2002-01-01 Sim4 clustering to Release 2
CG8090 2003-01-01 Sim4 clustering to Release 3
CG8090 2008-04-29 Release 5.5 accounting
CG8090 2008-08-15 Release 5.9 accounting
CG8090 2008-12-18 5.12 accounting

Clone Sequence Records

LD13915.complete Sequence

1841 bp (1841 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023838

> LD13915.complete
CTTTTTTGTTTATATTTGCTTGTTGGCATTTTCAGTTCCCAGAACAATTC
TTTTTAAAGTTAATTAGCTTAACTAAGCAATGCCAGTAACAAGACAATCT
GGAAAGTAATTGACATATCCGATCTGAAGGCAGACAAGGCATTAAAATGG
CCTTCCTGGGCGACTGTGTTATTGTGTTCGTGTCGCAGATGATATTCTTC
GCCGGCGGCTGGCTGTTTTTCAACAAAGAACTCTTCAAGCACTATGAGAT
ACGACATATATCCGTTCAGTTGATTTTTTCATCCACATTTGCCTTATCCA
TAACCATGTTCGAGTTGATCATATTCGAAATCATCGATGTTCTGGAGTCC
AGTTCAAGGTACTTCCATTGGCGACTGGGTCTCACGTTACTACTCTTTAT
GACGACGGCTGTGATACCCATTTACATTTGCTACTCCGTGATACACAGCA
TTTCTTTCTTTTCCGATAAATGGGTCCGAATTCTGACCACATTCTGTTGG
TTCATCTTTATATATGGGCTTTGGCGGATTGGTGACCCCTTTCCTTTGCT
GAGCGCTTCCCACGGAATCTTTACGATCGAACAGGGCGTTTCCCGGATTA
GTGTGATTGGGGTCACTGTAATGGCCATACTTTCTGGCTTTGGTGCCGTC
AATTATCCGTACACCAGTATGTCCTATTTCATCAAGCCAGTGTCTCGGAA
TGATATCATCTGTTTTGAAAGGCGTTTGGCTTTGACAGTAGAAATGCTGT
CGGCCAAAAAGCGGAAGATTGCCATGGCCATCTATAATCACAACAAACTG
AATCCTTCCAAACCCAGAATTTGGGATATGCTTGCTTCTGCGGTCCAGCG
CAACACGAACAGTGGCGAAGACATCAATCAATTAAAACAGGAAGTGTATG
GCTTGGAGGAGCTATTACGCTCTGTTTTCTTAGAACTTAGTTCATTGAAA
AACATGGAAGAACGCCAAAGATGGTCTCAAACATTGAAGGGAAAGTACTT
CAATGTACTAGGACATTTTTTTAGTGTTTATTGTGTTTATAAGATATTTA
TGTGTTGCATCAACATTATCTTCGATAGAGTCGGTCGCAAGGATCCAGTC
ACACGAGGCCTTGAAATTGCCATACACTGGTGCGGCTTTAACATTGACTT
TGCGTTCTGGAATCAGCATATATCATTTCTGCTCGTCGGCTGCATTGTGA
TCACCTCGATTAGAGGTTTGTTGCTAACGCTGACAAAATTCTTTTATCGC
ATTTCATCGAGCAAGTCGAGCAACATCATAGTACTTATTTTGGGCCAGAT
CATGGGCATGTACTTCTGTTCCTCAGTATTGCTGATGCGCATGAACATGC
CAGCCGAGTATCGTGTGATCATCACCGAGGTTCTAGGAAATCTGCACTTC
AACTTCTACCATCGTTGGTTTGACGTAATATTCCTGGTCAGCGCATTGAC
CACCATCATTGTTCTATATCTGTCACGCAAGCCAGTTCGCGTGGACGATT
CCGATCTGAACTGATTTAAACTTGAGCGCTTCTGAGAGCCATTAGCCTCT
CATTTTAGGATAACCCGAAACGATTTAGAATCAGTTAGCCTAATTATTGC
AAGCTTTAAGTTATATATATCCGTGTATATACCAGTGTGTATGTATATAT
TTAATGCACATTAAGCTAACTTACTGTATAACGATGCACAAAAATCAAAG
TAACATTTGTTTGATTAAGTGAAATAAAACAACAAACTGTTTGTCTCTGA
AAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD13915.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8090-RA 1812 CG8090-RA 43..1799 1..1757 8785 100 Plus
CG8090-RB 1743 CG8090-RB 176..1743 189..1756 7840 100 Plus
CG8090-RB 1743 CG8090-RB 1..175 1..175 875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11086275..11086792 1756..1239 2590 100 Minus
chr2R 21145070 chr2R 11087867..11088140 459..186 1370 100 Minus
chr2R 21145070 chr2R 11087580..11087806 686..460 1135 100 Minus
chr2R 21145070 chr2R 11088199..11088386 188..1 940 100 Minus
chr2R 21145070 chr2R 11086845..11087031 1238..1052 935 100 Minus
chr2R 21145070 chr2R 11087329..11087513 870..686 925 100 Minus
chr2R 21145070 chr2R 11087088..11087271 1052..869 920 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15199064..15199582 1757..1239 2595 100 Minus
2R 25286936 2R 15200657..15200930 459..186 1370 100 Minus
2R 25286936 2R 15200370..15200596 686..460 1135 100 Minus
2R 25286936 2R 15200989..15201176 188..1 940 100 Minus
2R 25286936 2R 15199635..15199821 1238..1052 935 100 Minus
2R 25286936 2R 15200119..15200303 870..686 925 100 Minus
2R 25286936 2R 15199878..15200061 1052..869 920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15200263..15200781 1757..1239 2595 100 Minus
2R 25260384 2R 15201856..15202129 459..186 1370 100 Minus
2R 25260384 2R 15201569..15201795 686..460 1135 100 Minus
2R 25260384 2R 15202188..15202375 188..1 940 100 Minus
2R 25260384 2R 15200834..15201020 1238..1052 935 100 Minus
2R 25260384 2R 15201318..15201502 870..686 925 100 Minus
2R 25260384 2R 15201077..15201260 1052..869 920 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:32:18 has no hits.

LD13915.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:33:05 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11086275..11086792 1239..1756 100 <- Minus
chr2R 11086845..11087030 1053..1238 100 <- Minus
chr2R 11087088..11087269 871..1052 100 <- Minus
chr2R 11087329..11087513 686..870 100 <- Minus
chr2R 11087581..11087806 460..685 100 <- Minus
chr2R 11087867..11088137 189..459 100 <- Minus
chr2R 11088199..11088386 1..188 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:10 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1368 147..1514 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:20 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1368 147..1514 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:22 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1368 147..1514 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:01 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1368 147..1514 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:32:22 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
GPHR-RA 1..1368 147..1514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:34 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:20 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:22 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 25..1780 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:01 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:32:22 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
GPHR-RA 25..1780 1..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:05 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15199065..15199582 1239..1756 100 <- Minus
2R 15199635..15199820 1053..1238 100 <- Minus
2R 15199878..15200059 871..1052 100 <- Minus
2R 15200119..15200303 686..870 100 <- Minus
2R 15200371..15200596 460..685 100 <- Minus
2R 15200657..15200927 189..459 100 <- Minus
2R 15200989..15201176 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:05 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15199065..15199582 1239..1756 100 <- Minus
2R 15199635..15199820 1053..1238 100 <- Minus
2R 15199878..15200059 871..1052 100 <- Minus
2R 15200119..15200303 686..870 100 <- Minus
2R 15200371..15200596 460..685 100 <- Minus
2R 15200657..15200927 189..459 100 <- Minus
2R 15200989..15201176 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:05 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15199065..15199582 1239..1756 100 <- Minus
2R 15199635..15199820 1053..1238 100 <- Minus
2R 15199878..15200059 871..1052 100 <- Minus
2R 15200119..15200303 686..870 100 <- Minus
2R 15200371..15200596 460..685 100 <- Minus
2R 15200657..15200927 189..459 100 <- Minus
2R 15200989..15201176 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:22 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11086570..11087087 1239..1756 100 <- Minus
arm_2R 11087140..11087325 1053..1238 100 <- Minus
arm_2R 11087383..11087564 871..1052 100 <- Minus
arm_2R 11087624..11087808 686..870 100 <- Minus
arm_2R 11087876..11088101 460..685 100 <- Minus
arm_2R 11088162..11088432 189..459 100 <- Minus
arm_2R 11088494..11088681 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:36 Download gff for LD13915.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15201856..15202126 189..459 100 <- Minus
2R 15202188..15202375 1..188 100   Minus
2R 15200264..15200781 1239..1756 100 <- Minus
2R 15200834..15201019 1053..1238 100 <- Minus
2R 15201077..15201258 871..1052 100 <- Minus
2R 15201318..15201502 686..870 100 <- Minus
2R 15201570..15201795 460..685 100 <- Minus

LD13915.pep Sequence

Translation from 146 to 1513

> LD13915.pep
MAFLGDCVIVFVSQMIFFAGGWLFFNKELFKHYEIRHISVQLIFSSTFAL
SITMFELIIFEIIDVLESSSRYFHWRLGLTLLLFMTTAVIPIYICYSVIH
SISFFSDKWVRILTTFCWFIFIYGLWRIGDPFPLLSASHGIFTIEQGVSR
ISVIGVTVMAILSGFGAVNYPYTSMSYFIKPVSRNDIICFERRLALTVEM
LSAKKRKIAMAIYNHNKLNPSKPRIWDMLASAVQRNTNSGEDINQLKQEV
YGLEELLRSVFLELSSLKNMEERQRWSQTLKGKYFNVLGHFFSVYCVYKI
FMCCINIIFDRVGRKDPVTRGLEIAIHWCGFNIDFAFWNQHISFLLVGCI
VITSIRGLLLTLTKFFYRISSSKSSNIIVLILGQIMGMYFCSSVLLMRMN
MPAEYRVIITEVLGNLHFNFYHRWFDVIFLVSALTTIIVLYLSRKPVRVD
DSDLN*

LD13915.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12626-PA 455 GF12626-PA 1..455 1..455 2186 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22371-PA 455 GG22371-PA 1..455 1..455 2265 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20796-PA 442 GH20796-PA 1..441 15..455 2136 91.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-PA 455 CG8090-PA 1..455 1..455 2367 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20881-PA 448 GI20881-PA 1..448 1..455 2159 90.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11475-PA 449 GL11475-PA 1..449 1..455 2132 90.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20816-PA 447 GA20816-PA 1..447 1..455 2121 90.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20156-PA 402 GM20156-PA 1..402 54..455 2105 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25634-PA 455 GD25634-PA 1..455 1..455 2377 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20616-PA 450 GJ20616-PA 1..450 1..455 2187 91.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19445-PA 455 GK19445-PA 1..455 1..455 2227 90.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12259-PA 402 GE12259-PA 1..402 54..455 2002 95 Plus
Dyak\GE14878-PA 401 GE14878-PA 1..401 15..442 1887 87.4 Plus

LD13915.hyp Sequence

Translation from 146 to 1513

> LD13915.hyp
MAFLGDCVIVFVSQMIFFAGGWLFFNKELFKHYEIRHISVQLIFSSTFAL
SITMFELIIFEIIDVLESSSRYFHWRLGLTLLLFMTTAVIPIYICYSVIH
SISFFSDKWVRILTTFCWFIFIYGLWRIGDPFPLLSASHGIFTIEQGVSR
ISVIGVTVMAILSGFGAVNYPYTSMSYFIKPVSRNDIICFERRLALTVEM
LSAKKRKIAMAIYNHNKLNPSKPRIWDMLASAVQRNTNSGEDINQLKQEV
YGLEELLRSVFLELSSLKNMEERQRWSQTLKGKYFNVLGHFFSVYCVYKI
FMCCINIIFDRVGRKDPVTRGLEIAIHWCGFNIDFAFWNQHISFLLVGCI
VITSIRGLLLTLTKFFYRISSSKSSNIIVLILGQIMGMYFCSSVLLMRMN
MPAEYRVIITEVLGNLHFNFYHRWFDVIFLVSALTTIIVLYLSRKPVRVD
DSDLN*

LD13915.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-PA 455 CG8090-PA 1..455 1..455 2367 100 Plus