Clone LD13945 Report

Search the DGRC for LD13945

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:139
Well:45
Vector:pBS SK-
Associated Gene/TranscriptDcp-1-RA
Protein status:LD13945.pep: gold
Preliminary Size:1798
Sequenced Size:1744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5370 2001-01-01 Release 2 assignment
CG5370 2003-01-01 Sim4 clustering to Release 3
CG5370 2003-04-25 Blastp of sequenced clone
Dcp-1 2008-04-29 Release 5.5 accounting
Dcp-1 2008-08-15 Release 5.9 accounting
Dcp-1 2008-12-18 5.12 accounting

Clone Sequence Records

LD13945.complete Sequence

1744 bp (1744 high quality bases) assembled on 2003-04-25

GenBank Submission: BT010065

> LD13945.complete
CATACACACGACTACATGCAATCGCAGTTTGTTTTCGCCGCTCAGAGCAC
GCTTAACCTCCGTTAATTGATTGATTAAACACGTCCGACTGTGAGCCATA
AAAGGACATTCGCTCGATCGAAAGCCGACAAAAGCTGGCTGAGAAGCGCA
AAACAGCTGCGCTGCGCAAAGTTTGGCCAACGCAGAGCAATAGAAAACAG
AAGCAGTGTCAGAATAAAACAAGAATCAGACCAAAAAGGGCGCAACAACT
GCGGAGAGAGAAAAGGAAGGAAAGAGCAGCGCGTGAGCGAGGGAGGAGCA
GGAGGGAGCGAACAAAAGGCAAGAGGAAACACAAGGAGAAACGCAAACAA
TCAAAACAAGAACTTAAGCAAGAAAAGGGGCGCAAGATGACCGACGAGTG
CGTAACCAGAAACTACGGAGTAGGCATTCGCAGCCCAAATGGATCGGAAA
ATCGGGGCAGCTTTATAATGGCTGATAATACCGATGCCAAGGGCTGTACG
CCGGAGTCTCTTGTTGTTGGTGGTGCAACTGCAGCGAGCCCCTTGCCGGC
CAACAAGTTTGTGGCTCGAATGCCCGTGGAACGATATGCAAGCGAATACA
ACATGAGTCACAAGCACCGCGGAGTTGCGCTGATCTTCAACCACGAATTC
TTCGACATACCCTCGCTGAAGAGCCGCACCGGAACAAATGTCGATGCCCA
AGAGCTGAAAAAGGCCTTTGAAAACCTGGGATTCGCGGTGTCCGTGCACA
AGGACTGCAAGTTGAGGGACATCCTGAAGCACGTGGGGAAGGCCGCCGAG
TTGGACCACACGGACAACGACTGCCTTGCGGTGGCCATACTCTCGCACGG
GGAGCACGGCTACCTGTACGCCAAGGATACGCAGTACAAGCTGGACAACA
TCTGGCACTACTTCACTGCCACCTTCTGCCCCTCGCTGGCGGGCAAGCCG
AAGCTGTTCTTCATCCAAGCCTGCCAGGGCGATCGCTTGGACGGAGGCAT
CACTCTGGAGAAGGGCGTTACCGAGACGGACGGGGAGTCCTCGACGAGCT
ACAAGATACCCATACACGCCGACTTTCTCTTCTCCTACTCGACCATTCCG
GGCTACTTCTCCTGGCGCAACATCAACAATGGCTCCTGGTACATGCAATC
GCTGATCCGCGAGCTGAACGCCAATGGCAAAAAGTACGACCTGCTCACCC
TGCTTACATTCGTTAACCAGCGCGTAGCCCTAGACTTTGAGTCGAACGTG
CCCGCCACACCGATGATGGATCGCCAGAAGCAAATACCGTGCCTCACCTC
CATGCTGACGCGCATACTGCGCTTCGGCGACAAGCCGAACGGCAATAAGG
CTGGCTAGGAAGAGATCTCCCTTCGAAGAAGAACTTTCAACAGAGGTTGT
ACAACCATCGCCCGCAATCATTCACGTTGGATTCCAATTCACTTCAAGTT
TAGTTTTAGCTGACGCGTGCGATTATCCCGATGGATATTGAAGCACCCGA
CTCCCTTTCATTCATTCCCCTGCCTTTCCCATGCCCATTTCGGCCTTATC
ATTGACGAAATTCGTTACCCATTTACCCACTAGATGACTTCCGTATGCAT
AAGCGAGACCTTGCCAATAGAAAACCCACAAATTTGAGATAAGATAATAC
AATGAAGATTTATACATACATACATACTTTTATGTACACGCAAACATTTA
TATTTGATATGAATAAAAATGAATTAAAAAAAAAAAAAAAAAAA

LD13945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dcp-1-RA 1985 Dcp-1-RA 43..1772 1..1730 8650 100 Plus
pita-RB 2443 pita-RB 1..119 119..1 595 100 Minus
Ice-RA 1933 Ice-RA 734..886 830..982 360 82.3 Plus
Ice-RA 1933 Ice-RA 942..1051 1038..1147 190 78.1 Plus
Ice-RA 1933 Ice-RA 1179..1239 1275..1335 185 86.8 Plus
Ice-RA 1933 Ice-RA 490..547 586..643 155 84.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19439249..19439873 1101..1725 3125 100 Plus
chr2R 21145070 chr2R 19438625..19439190 537..1102 2815 99.8 Plus
chr2R 21145070 chr2R 19437665..19438202 1..538 2660 99.6 Plus
chr3R 27901430 chr3R 25622955..25623460 830..1335 595 74.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23552923..23553552 1101..1730 3150 100 Plus
2R 25286936 2R 23552299..23552864 537..1102 2830 100 Plus
2R 25286936 2R 23551337..23551874 1..538 2690 100 Plus
3R 32079331 3R 29800386..29800891 830..1335 595 74.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23554122..23554751 1101..1730 3150 100 Plus
2R 25260384 2R 23553498..23554063 537..1102 2830 100 Plus
2R 25260384 2R 23552536..23553073 1..538 2690 100 Plus
3R 31820162 3R 29541217..29541369 830..982 360 82.3 Plus
3R 31820162 3R 29541425..29541534 1038..1147 190 78.1 Plus
3R 31820162 3R 29541662..29541722 1275..1335 185 86.8 Plus
3R 31820162 3R 29540973..29541030 586..643 155 84.4 Plus
Blast to na_te.dros performed 2019-03-15 13:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 464..518 1659..1716 121 70.7 Plus

LD13945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:33:08 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19437665..19438202 1..538 99 -> Plus
chr2R 19438627..19439189 539..1101 99 -> Plus
chr2R 19439250..19439873 1102..1725 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:13 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 1..972 387..1358 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:57 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 1..972 387..1358 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:30 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 1..972 387..1358 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:23 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 1..972 387..1358 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:32:28 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 1..972 387..1358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:55:45 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 23..1747 1..1725 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:57 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 23..1747 1..1725 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:30 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 25..1749 1..1725 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:24 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 23..1747 1..1725 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:32:28 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp-1-RA 25..1749 1..1725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:08 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23551337..23551874 1..538 100 -> Plus
2R 23552301..23552863 539..1101 100 -> Plus
2R 23552924..23553547 1102..1725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:08 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23551337..23551874 1..538 100 -> Plus
2R 23552301..23552863 539..1101 100 -> Plus
2R 23552924..23553547 1102..1725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:08 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23551337..23551874 1..538 100 -> Plus
2R 23552301..23552863 539..1101 100 -> Plus
2R 23552924..23553547 1102..1725 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:30 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19438860..19439397 1..538 100 -> Plus
arm_2R 19439824..19440386 539..1101 100 -> Plus
arm_2R 19440447..19441070 1102..1725 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:06:26 Download gff for LD13945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23552554..23553091 1..538 100 -> Plus
2R 23553518..23554080 539..1101 100 -> Plus
2R 23554141..23554764 1102..1725 100   Plus

LD13945.pep Sequence

Translation from 386 to 1357

> LD13945.pep
MTDECVTRNYGVGIRSPNGSENRGSFIMADNTDAKGCTPESLVVGGATAA
SPLPANKFVARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGT
NVDAQELKKAFENLGFAVSVHKDCKLRDILKHVGKAAELDHTDNDCLAVA
ILSHGEHGYLYAKDTQYKLDNIWHYFTATFCPSLAGKPKLFFIQACQGDR
LDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTIPGYFSWRNINNGS
WYMQSLIRELNANGKKYDLLTLLTFVNQRVALDFESNVPATPMMDRQKQI
PCLTSMLTRILRFGDKPNGNKAG*

LD13945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13064-PA 326 GF13064-PA 1..326 1..323 1404 81.5 Plus
Dana\GF18666-PA 338 GF18666-PA 71..330 57..316 992 66.9 Plus
Dana\GF17937-PA 309 GF17937-PA 56..307 79..317 426 35.7 Plus
Dana\GF13826-PA 525 GF13826-PA 315..523 83..315 220 32.9 Plus
Dana\GF10584-PA 450 GF10584-PA 127..417 8..281 214 23.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22866-PA 323 GG22866-PA 1..323 1..323 1630 93.5 Plus
Dere\GG16826-PA 308 GG16826-PA 20..306 45..317 436 33.8 Plus
Dere\GG10839-PA 531 GG10839-PA 317..529 79..315 251 33.6 Plus
Dere\GG15422-PA 451 GG15422-PA 188..394 71..256 204 28.8 Plus
Dere\GG12750-PA 503 GG12750-PA 237..495 29..297 203 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21208-PA 318 GH21208-PA 1..313 1..316 1192 68.9 Plus
Dgri\GH19956-PA 351 GH19956-PA 70..349 42..323 994 64.5 Plus
Dgri\GH19945-PA 294 GH19945-PA 1..285 28..316 833 55 Plus
Dgri\GH13138-PA 292 GH13138-PA 35..279 69..315 507 42.5 Plus
Dgri\GH17516-PA 309 GH17516-PA 57..303 79..313 425 35.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dcp-1-PA 323 CG5370-PA 1..323 1..323 1718 100 Plus
Drice-PA 339 CG7788-PA 72..331 57..316 980 67.7 Plus
Decay-PA 308 CG14902-PA 22..306 47..317 410 34 Plus
Strica-PB 527 CG7863-PB 317..525 83..315 248 34.6 Plus
Strica-PA 527 CG7863-PA 317..525 83..315 248 34.6 Plus
Dronc-PA 450 CG8091-PA 191..417 74..280 193 24.9 Plus
Dredd-PD 488 CG7486-PD 253..466 73..287 191 27.9 Plus
Dredd-PG 440 CG7486-PG 199..418 73..287 185 27.2 Plus
Dredd-PE 494 CG7486-PE 253..472 73..287 185 27.2 Plus
Damm-PB 255 CG18188-PB 42..235 83..301 177 28.1 Plus
Damm-PA 255 CG18188-PA 42..235 83..301 177 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20496-PA 318 GI20496-PA 1..318 1..323 1156 67 Plus
Dmoj\GI22043-PA 345 GI22043-PA 77..337 56..316 996 67.8 Plus
Dmoj\GI22869-PA 295 GI22869-PA 47..295 59..313 606 46.1 Plus
Dmoj\GI10391-PA 539 GI10391-PA 36..246 59..262 355 35.2 Plus
Dmoj\GI12317-PA 451 GI12317-PA 186..392 60..254 209 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16870-PA 323 GL16870-PA 1..323 1..323 1296 74.8 Plus
Dper\GL23515-PA 344 GL23515-PA 77..336 57..316 997 66.9 Plus
Dper\GL11317-PA 257 GL11317-PA 7..254 67..318 890 66.3 Plus
Dper\GL27295-PA 308 GL27295-PA 56..306 79..317 439 36.6 Plus
Dper\GL17786-PA 511 GL17786-PA 301..509 83..315 242 32.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18828-PA 323 GA18828-PA 1..323 1..323 1300 75.2 Plus
Dpse\GA24681-PA 261 GA24681-PA 7..258 67..318 999 72.2 Plus
Dpse\GA20588-PA 344 GA20588-PA 77..336 57..316 997 66.9 Plus
Dpse\GA13340-PA 308 GA13340-PA 56..306 79..317 439 36.6 Plus
Dpse\GA20641-PA 511 GA20641-PA 301..509 83..315 235 32.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16025-PA 323 GM16025-PA 1..323 1..323 1722 97.8 Plus
Dsec\GM12823-PA 343 GM12823-PA 76..335 57..316 1009 67.7 Plus
Dsec\GM15423-PA 308 GM15423-PA 20..306 45..317 429 33.4 Plus
Dsec\GM16490-PA 526 GM16490-PA 268..524 12..315 274 31.1 Plus
Dsec\GM25197-PA 449 GM25197-PA 189..417 71..281 198 25.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11774-PA 323 GD11774-PA 1..323 1..323 1727 98.1 Plus
Dsim\GD21467-PA 343 GD21467-PA 76..335 57..316 1008 67.7 Plus
Dsim\GD20281-PA 302 GD20281-PA 20..302 45..319 373 31.9 Plus
Dsim\GD10341-PA 160 GD10341-PA 6..158 140..315 196 33.3 Plus
Dsim\GD14228-PA 449 GD14228-PA 189..417 71..281 195 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22346-PA 314 GJ22346-PA 1..314 1..323 1211 69.5 Plus
Dvir\GJ24096-PA 345 GJ24096-PA 77..337 56..316 985 66.3 Plus
Dvir\GJ23418-PA 300 GJ23418-PA 43..294 58..315 676 49.8 Plus
Dvir\GJ19552-PA 271 GJ19552-PA 16..267 68..318 662 51.6 Plus
Dvir\GJ22849-PA 310 GJ22849-PA 57..308 79..317 438 35.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23280-PA 330 GK23280-PA 1..330 1..323 1352 76.2 Plus
Dwil\GK11928-PA 346 GK11928-PA 77..338 56..316 1025 69.5 Plus
Dwil\GK11926-PA 256 GK11926-PA 1..256 62..316 874 62.1 Plus
Dwil\GK11927-PA 255 GK11927-PA 1..255 62..316 851 60 Plus
Dwil\GK11868-PA 311 GK11868-PA 56..309 79..317 411 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14302-PA 325 GE14302-PA 1..325 1..323 1673 94.5 Plus
Dyak\GE23886-PA 339 GE23886-PA 72..332 57..317 1015 67.8 Plus
Dyak\GE26146-PA 308 GE26146-PA 20..306 45..317 427 33.1 Plus
Dyak\GE19433-PA 526 GE19433-PA 316..524 83..315 255 34.6 Plus
Dyak\Dredd-PA 507 GE16575-PA 262..499 66..297 218 28.4 Plus

LD13945.hyp Sequence

Translation from 386 to 1357

> LD13945.hyp
MTDECVTRNYGVGIRSPNGSENRGSFIMADNTDAKGCTPESLVVGGATAA
SPLPANKFVARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGT
NVDAQELKKAFENLGFAVSVHKDCKLRDILKHVGKAAELDHTDNDCLAVA
ILSHGEHGYLYAKDTQYKLDNIWHYFTATFCPSLAGKPKLFFIQACQGDR
LDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTIPGYFSWRNINNGS
WYMQSLIRELNANGKKYDLLTLLTFVNQRVALDFESNVPATPMMDRQKQI
PCLTSMLTRILRFGDKPNGNKAG*

LD13945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dcp-1-PA 323 CG5370-PA 1..323 1..323 1718 100 Plus
Drice-PA 339 CG7788-PA 72..331 57..316 980 67.7 Plus
Decay-PA 308 CG14902-PA 22..306 47..317 410 34 Plus
Strica-PB 527 CG7863-PB 317..525 83..315 248 34.6 Plus
Strica-PA 527 CG7863-PA 317..525 83..315 248 34.6 Plus