BDGP Sequence Production Resources |
Search the DGRC for LD13945
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 139 |
Well: | 45 |
Vector: | pBS SK- |
Associated Gene/Transcript | Dcp-1-RA |
Protein status: | LD13945.pep: gold |
Preliminary Size: | 1798 |
Sequenced Size: | 1744 |
Gene | Date | Evidence |
---|---|---|
CG5370 | 2001-01-01 | Release 2 assignment |
CG5370 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5370 | 2003-04-25 | Blastp of sequenced clone |
Dcp-1 | 2008-04-29 | Release 5.5 accounting |
Dcp-1 | 2008-08-15 | Release 5.9 accounting |
Dcp-1 | 2008-12-18 | 5.12 accounting |
1744 bp (1744 high quality bases) assembled on 2003-04-25
GenBank Submission: BT010065
> LD13945.complete CATACACACGACTACATGCAATCGCAGTTTGTTTTCGCCGCTCAGAGCAC GCTTAACCTCCGTTAATTGATTGATTAAACACGTCCGACTGTGAGCCATA AAAGGACATTCGCTCGATCGAAAGCCGACAAAAGCTGGCTGAGAAGCGCA AAACAGCTGCGCTGCGCAAAGTTTGGCCAACGCAGAGCAATAGAAAACAG AAGCAGTGTCAGAATAAAACAAGAATCAGACCAAAAAGGGCGCAACAACT GCGGAGAGAGAAAAGGAAGGAAAGAGCAGCGCGTGAGCGAGGGAGGAGCA GGAGGGAGCGAACAAAAGGCAAGAGGAAACACAAGGAGAAACGCAAACAA TCAAAACAAGAACTTAAGCAAGAAAAGGGGCGCAAGATGACCGACGAGTG CGTAACCAGAAACTACGGAGTAGGCATTCGCAGCCCAAATGGATCGGAAA ATCGGGGCAGCTTTATAATGGCTGATAATACCGATGCCAAGGGCTGTACG CCGGAGTCTCTTGTTGTTGGTGGTGCAACTGCAGCGAGCCCCTTGCCGGC CAACAAGTTTGTGGCTCGAATGCCCGTGGAACGATATGCAAGCGAATACA ACATGAGTCACAAGCACCGCGGAGTTGCGCTGATCTTCAACCACGAATTC TTCGACATACCCTCGCTGAAGAGCCGCACCGGAACAAATGTCGATGCCCA AGAGCTGAAAAAGGCCTTTGAAAACCTGGGATTCGCGGTGTCCGTGCACA AGGACTGCAAGTTGAGGGACATCCTGAAGCACGTGGGGAAGGCCGCCGAG TTGGACCACACGGACAACGACTGCCTTGCGGTGGCCATACTCTCGCACGG GGAGCACGGCTACCTGTACGCCAAGGATACGCAGTACAAGCTGGACAACA TCTGGCACTACTTCACTGCCACCTTCTGCCCCTCGCTGGCGGGCAAGCCG AAGCTGTTCTTCATCCAAGCCTGCCAGGGCGATCGCTTGGACGGAGGCAT CACTCTGGAGAAGGGCGTTACCGAGACGGACGGGGAGTCCTCGACGAGCT ACAAGATACCCATACACGCCGACTTTCTCTTCTCCTACTCGACCATTCCG GGCTACTTCTCCTGGCGCAACATCAACAATGGCTCCTGGTACATGCAATC GCTGATCCGCGAGCTGAACGCCAATGGCAAAAAGTACGACCTGCTCACCC TGCTTACATTCGTTAACCAGCGCGTAGCCCTAGACTTTGAGTCGAACGTG CCCGCCACACCGATGATGGATCGCCAGAAGCAAATACCGTGCCTCACCTC CATGCTGACGCGCATACTGCGCTTCGGCGACAAGCCGAACGGCAATAAGG CTGGCTAGGAAGAGATCTCCCTTCGAAGAAGAACTTTCAACAGAGGTTGT ACAACCATCGCCCGCAATCATTCACGTTGGATTCCAATTCACTTCAAGTT TAGTTTTAGCTGACGCGTGCGATTATCCCGATGGATATTGAAGCACCCGA CTCCCTTTCATTCATTCCCCTGCCTTTCCCATGCCCATTTCGGCCTTATC ATTGACGAAATTCGTTACCCATTTACCCACTAGATGACTTCCGTATGCAT AAGCGAGACCTTGCCAATAGAAAACCCACAAATTTGAGATAAGATAATAC AATGAAGATTTATACATACATACATACTTTTATGTACACGCAAACATTTA TATTTGATATGAATAAAAATGAATTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dcp-1-RA | 1985 | Dcp-1-RA | 43..1772 | 1..1730 | 8650 | 100 | Plus |
pita-RB | 2443 | pita-RB | 1..119 | 119..1 | 595 | 100 | Minus |
Ice-RA | 1933 | Ice-RA | 734..886 | 830..982 | 360 | 82.3 | Plus |
Ice-RA | 1933 | Ice-RA | 942..1051 | 1038..1147 | 190 | 78.1 | Plus |
Ice-RA | 1933 | Ice-RA | 1179..1239 | 1275..1335 | 185 | 86.8 | Plus |
Ice-RA | 1933 | Ice-RA | 490..547 | 586..643 | 155 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19439249..19439873 | 1101..1725 | 3125 | 100 | Plus |
chr2R | 21145070 | chr2R | 19438625..19439190 | 537..1102 | 2815 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 19437665..19438202 | 1..538 | 2660 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 25622955..25623460 | 830..1335 | 595 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23552923..23553552 | 1101..1730 | 3150 | 100 | Plus |
2R | 25286936 | 2R | 23552299..23552864 | 537..1102 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 23551337..23551874 | 1..538 | 2690 | 100 | Plus |
3R | 32079331 | 3R | 29800386..29800891 | 830..1335 | 595 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23554122..23554751 | 1101..1730 | 3150 | 100 | Plus |
2R | 25260384 | 2R | 23553498..23554063 | 537..1102 | 2830 | 100 | Plus |
2R | 25260384 | 2R | 23552536..23553073 | 1..538 | 2690 | 100 | Plus |
3R | 31820162 | 3R | 29541217..29541369 | 830..982 | 360 | 82.3 | Plus |
3R | 31820162 | 3R | 29541425..29541534 | 1038..1147 | 190 | 78.1 | Plus |
3R | 31820162 | 3R | 29541662..29541722 | 1275..1335 | 185 | 86.8 | Plus |
3R | 31820162 | 3R | 29540973..29541030 | 586..643 | 155 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 464..518 | 1659..1716 | 121 | 70.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19437665..19438202 | 1..538 | 99 | -> | Plus |
chr2R | 19438627..19439189 | 539..1101 | 99 | -> | Plus |
chr2R | 19439250..19439873 | 1102..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 1..972 | 387..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 1..972 | 387..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 1..972 | 387..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 1..972 | 387..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 1..972 | 387..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 23..1747 | 1..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 23..1747 | 1..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 25..1749 | 1..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 23..1747 | 1..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dcp-1-RA | 25..1749 | 1..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23551337..23551874 | 1..538 | 100 | -> | Plus |
2R | 23552301..23552863 | 539..1101 | 100 | -> | Plus |
2R | 23552924..23553547 | 1102..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23551337..23551874 | 1..538 | 100 | -> | Plus |
2R | 23552301..23552863 | 539..1101 | 100 | -> | Plus |
2R | 23552924..23553547 | 1102..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23551337..23551874 | 1..538 | 100 | -> | Plus |
2R | 23552301..23552863 | 539..1101 | 100 | -> | Plus |
2R | 23552924..23553547 | 1102..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19438860..19439397 | 1..538 | 100 | -> | Plus |
arm_2R | 19439824..19440386 | 539..1101 | 100 | -> | Plus |
arm_2R | 19440447..19441070 | 1102..1725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23552554..23553091 | 1..538 | 100 | -> | Plus |
2R | 23553518..23554080 | 539..1101 | 100 | -> | Plus |
2R | 23554141..23554764 | 1102..1725 | 100 | Plus |
Translation from 386 to 1357
> LD13945.pep MTDECVTRNYGVGIRSPNGSENRGSFIMADNTDAKGCTPESLVVGGATAA SPLPANKFVARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGT NVDAQELKKAFENLGFAVSVHKDCKLRDILKHVGKAAELDHTDNDCLAVA ILSHGEHGYLYAKDTQYKLDNIWHYFTATFCPSLAGKPKLFFIQACQGDR LDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTIPGYFSWRNINNGS WYMQSLIRELNANGKKYDLLTLLTFVNQRVALDFESNVPATPMMDRQKQI PCLTSMLTRILRFGDKPNGNKAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13064-PA | 326 | GF13064-PA | 1..326 | 1..323 | 1404 | 81.5 | Plus |
Dana\GF18666-PA | 338 | GF18666-PA | 71..330 | 57..316 | 992 | 66.9 | Plus |
Dana\GF17937-PA | 309 | GF17937-PA | 56..307 | 79..317 | 426 | 35.7 | Plus |
Dana\GF13826-PA | 525 | GF13826-PA | 315..523 | 83..315 | 220 | 32.9 | Plus |
Dana\GF10584-PA | 450 | GF10584-PA | 127..417 | 8..281 | 214 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22866-PA | 323 | GG22866-PA | 1..323 | 1..323 | 1630 | 93.5 | Plus |
Dere\GG16826-PA | 308 | GG16826-PA | 20..306 | 45..317 | 436 | 33.8 | Plus |
Dere\GG10839-PA | 531 | GG10839-PA | 317..529 | 79..315 | 251 | 33.6 | Plus |
Dere\GG15422-PA | 451 | GG15422-PA | 188..394 | 71..256 | 204 | 28.8 | Plus |
Dere\GG12750-PA | 503 | GG12750-PA | 237..495 | 29..297 | 203 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21208-PA | 318 | GH21208-PA | 1..313 | 1..316 | 1192 | 68.9 | Plus |
Dgri\GH19956-PA | 351 | GH19956-PA | 70..349 | 42..323 | 994 | 64.5 | Plus |
Dgri\GH19945-PA | 294 | GH19945-PA | 1..285 | 28..316 | 833 | 55 | Plus |
Dgri\GH13138-PA | 292 | GH13138-PA | 35..279 | 69..315 | 507 | 42.5 | Plus |
Dgri\GH17516-PA | 309 | GH17516-PA | 57..303 | 79..313 | 425 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dcp-1-PA | 323 | CG5370-PA | 1..323 | 1..323 | 1718 | 100 | Plus |
Drice-PA | 339 | CG7788-PA | 72..331 | 57..316 | 980 | 67.7 | Plus |
Decay-PA | 308 | CG14902-PA | 22..306 | 47..317 | 410 | 34 | Plus |
Strica-PB | 527 | CG7863-PB | 317..525 | 83..315 | 248 | 34.6 | Plus |
Strica-PA | 527 | CG7863-PA | 317..525 | 83..315 | 248 | 34.6 | Plus |
Dronc-PA | 450 | CG8091-PA | 191..417 | 74..280 | 193 | 24.9 | Plus |
Dredd-PD | 488 | CG7486-PD | 253..466 | 73..287 | 191 | 27.9 | Plus |
Dredd-PG | 440 | CG7486-PG | 199..418 | 73..287 | 185 | 27.2 | Plus |
Dredd-PE | 494 | CG7486-PE | 253..472 | 73..287 | 185 | 27.2 | Plus |
Damm-PB | 255 | CG18188-PB | 42..235 | 83..301 | 177 | 28.1 | Plus |
Damm-PA | 255 | CG18188-PA | 42..235 | 83..301 | 177 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20496-PA | 318 | GI20496-PA | 1..318 | 1..323 | 1156 | 67 | Plus |
Dmoj\GI22043-PA | 345 | GI22043-PA | 77..337 | 56..316 | 996 | 67.8 | Plus |
Dmoj\GI22869-PA | 295 | GI22869-PA | 47..295 | 59..313 | 606 | 46.1 | Plus |
Dmoj\GI10391-PA | 539 | GI10391-PA | 36..246 | 59..262 | 355 | 35.2 | Plus |
Dmoj\GI12317-PA | 451 | GI12317-PA | 186..392 | 60..254 | 209 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16870-PA | 323 | GL16870-PA | 1..323 | 1..323 | 1296 | 74.8 | Plus |
Dper\GL23515-PA | 344 | GL23515-PA | 77..336 | 57..316 | 997 | 66.9 | Plus |
Dper\GL11317-PA | 257 | GL11317-PA | 7..254 | 67..318 | 890 | 66.3 | Plus |
Dper\GL27295-PA | 308 | GL27295-PA | 56..306 | 79..317 | 439 | 36.6 | Plus |
Dper\GL17786-PA | 511 | GL17786-PA | 301..509 | 83..315 | 242 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18828-PA | 323 | GA18828-PA | 1..323 | 1..323 | 1300 | 75.2 | Plus |
Dpse\GA24681-PA | 261 | GA24681-PA | 7..258 | 67..318 | 999 | 72.2 | Plus |
Dpse\GA20588-PA | 344 | GA20588-PA | 77..336 | 57..316 | 997 | 66.9 | Plus |
Dpse\GA13340-PA | 308 | GA13340-PA | 56..306 | 79..317 | 439 | 36.6 | Plus |
Dpse\GA20641-PA | 511 | GA20641-PA | 301..509 | 83..315 | 235 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16025-PA | 323 | GM16025-PA | 1..323 | 1..323 | 1722 | 97.8 | Plus |
Dsec\GM12823-PA | 343 | GM12823-PA | 76..335 | 57..316 | 1009 | 67.7 | Plus |
Dsec\GM15423-PA | 308 | GM15423-PA | 20..306 | 45..317 | 429 | 33.4 | Plus |
Dsec\GM16490-PA | 526 | GM16490-PA | 268..524 | 12..315 | 274 | 31.1 | Plus |
Dsec\GM25197-PA | 449 | GM25197-PA | 189..417 | 71..281 | 198 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11774-PA | 323 | GD11774-PA | 1..323 | 1..323 | 1727 | 98.1 | Plus |
Dsim\GD21467-PA | 343 | GD21467-PA | 76..335 | 57..316 | 1008 | 67.7 | Plus |
Dsim\GD20281-PA | 302 | GD20281-PA | 20..302 | 45..319 | 373 | 31.9 | Plus |
Dsim\GD10341-PA | 160 | GD10341-PA | 6..158 | 140..315 | 196 | 33.3 | Plus |
Dsim\GD14228-PA | 449 | GD14228-PA | 189..417 | 71..281 | 195 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22346-PA | 314 | GJ22346-PA | 1..314 | 1..323 | 1211 | 69.5 | Plus |
Dvir\GJ24096-PA | 345 | GJ24096-PA | 77..337 | 56..316 | 985 | 66.3 | Plus |
Dvir\GJ23418-PA | 300 | GJ23418-PA | 43..294 | 58..315 | 676 | 49.8 | Plus |
Dvir\GJ19552-PA | 271 | GJ19552-PA | 16..267 | 68..318 | 662 | 51.6 | Plus |
Dvir\GJ22849-PA | 310 | GJ22849-PA | 57..308 | 79..317 | 438 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23280-PA | 330 | GK23280-PA | 1..330 | 1..323 | 1352 | 76.2 | Plus |
Dwil\GK11928-PA | 346 | GK11928-PA | 77..338 | 56..316 | 1025 | 69.5 | Plus |
Dwil\GK11926-PA | 256 | GK11926-PA | 1..256 | 62..316 | 874 | 62.1 | Plus |
Dwil\GK11927-PA | 255 | GK11927-PA | 1..255 | 62..316 | 851 | 60 | Plus |
Dwil\GK11868-PA | 311 | GK11868-PA | 56..309 | 79..317 | 411 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14302-PA | 325 | GE14302-PA | 1..325 | 1..323 | 1673 | 94.5 | Plus |
Dyak\GE23886-PA | 339 | GE23886-PA | 72..332 | 57..317 | 1015 | 67.8 | Plus |
Dyak\GE26146-PA | 308 | GE26146-PA | 20..306 | 45..317 | 427 | 33.1 | Plus |
Dyak\GE19433-PA | 526 | GE19433-PA | 316..524 | 83..315 | 255 | 34.6 | Plus |
Dyak\Dredd-PA | 507 | GE16575-PA | 262..499 | 66..297 | 218 | 28.4 | Plus |
Translation from 386 to 1357
> LD13945.hyp MTDECVTRNYGVGIRSPNGSENRGSFIMADNTDAKGCTPESLVVGGATAA SPLPANKFVARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGT NVDAQELKKAFENLGFAVSVHKDCKLRDILKHVGKAAELDHTDNDCLAVA ILSHGEHGYLYAKDTQYKLDNIWHYFTATFCPSLAGKPKLFFIQACQGDR LDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTIPGYFSWRNINNGS WYMQSLIRELNANGKKYDLLTLLTFVNQRVALDFESNVPATPMMDRQKQI PCLTSMLTRILRFGDKPNGNKAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dcp-1-PA | 323 | CG5370-PA | 1..323 | 1..323 | 1718 | 100 | Plus |
Drice-PA | 339 | CG7788-PA | 72..331 | 57..316 | 980 | 67.7 | Plus |
Decay-PA | 308 | CG14902-PA | 22..306 | 47..317 | 410 | 34 | Plus |
Strica-PB | 527 | CG7863-PB | 317..525 | 83..315 | 248 | 34.6 | Plus |
Strica-PA | 527 | CG7863-PA | 317..525 | 83..315 | 248 | 34.6 | Plus |