Clone LD14015 Report

Search the DGRC for LD14015

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:140
Well:15
Vector:pBS SK-
Associated Gene/TranscriptCG10103-RA
Protein status:LD14015.pep: gold
Preliminary Size:1733
Sequenced Size:1645

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10103 2001-11-29 Blastp of sequenced clone
CG10103 2003-01-01 Sim4 clustering to Release 3
CG10103 2008-04-29 Release 5.5 accounting
CG10103 2008-08-15 Release 5.9 accounting
CG10103 2008-12-18 5.12 accounting

Clone Sequence Records

LD14015.complete Sequence

1645 bp (1645 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069431

> LD14015.complete
TACGGTCACACTGCACGTGACGTCACATTGTTTTTTCCATACCGAATTAA
TGAATCACCACTGACCGAATTTCCTTGTTTTCACAACTAATTCGGAAGTC
CAGGGTGTAGTGAAGATGTTTTCCAGCGGCCCCAATTACAACAAACTGAA
GACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAGA
AGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGCC
ACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGGA
GGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTGT
TGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGGG
ATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGAG
CGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATACG
GTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGTG
TCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTTT
GGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATACG
AACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCTG
ATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCGG
CGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATGC
CAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTAC
CCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTGG
TGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTACA
ATATACCGCCCAATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAAATGT
GCCGAGGAGAAGGATCTGAACACCAACTTTATCGATCGTGAAGCGAACAA
CACGGATGGCTCGGGCAGCCCGGATGAGAATATTTTGCGCCCCAAACCCG
AAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCTGTAAATCTCCAG
AATGCCAACAAACCGAAACCACAACCCCGATCCAAGCTGCCACCGGGTAA
TCCCACGCTACCAAGTGCTCCTCCGGCATTGGACTTCCCCTCGCTGCCCA
ACGTTCCCAACGATCTGCCAGATATTCCGGGCGCAGGTGCCGAGAAGAAG
AACGACGAGGATGAGATTGATTTCGATGACCTGTCACGTCGCTTCGAGAA
CCTTAAGAAGCGAAAGTAAAGCTGGCCAGCAGATCACCTTTTAAGTCTAC
AGTATATTTGTTATAATCTCTGTCCTGTTCTACATTAATAATCACGTATA
TGTGTAAGGAACTATTGATCATTTTGTTTTTTCGATTAAGTAGTTAATCA
GACTTCAAAAATGTATAATCTGAATTGAAAGATGGTTGACCTATTGCTTT
TCATATTCGCAATCTTGATTCATCTAAAAACAGCCTAAAGATTAAAATAC
TAACAGATTAAATTCTGTGTACTTATCAAAAAAAAAAAAAAAAAA

LD14015.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-RA 1653 CG10103-RA 13..1640 1..1628 8140 100 Plus
CG10103.c 1590 CG10103.c 13..1099 1..1087 5435 100 Plus
CG10103.b 1602 CG10103.b 13..1050 1..1038 5190 100 Plus
CG10103.b 1602 CG10103.b 1049..1589 1088..1628 2705 100 Plus
CG10103.c 1590 CG10103.c 1099..1577 1150..1628 2395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6747781..6748522 1036..295 3665 99.6 Minus
chr3L 24539361 chr3L 6746403..6746876 1627..1148 2275 98.8 Minus
chr3L 24539361 chr3L 6748583..6748880 298..1 1430 98.7 Minus
chr3L 24539361 chr3L 6747125..6747188 1150..1087 320 100 Minus
chr3L 24539361 chr3L 6747453..6747503 1087..1037 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6755420..6756161 1036..295 3710 100 Minus
3L 28110227 3L 6754016..6754496 1628..1148 2405 100 Minus
3L 28110227 3L 6756222..6756519 298..1 1490 100 Minus
3L 28110227 3L 6754745..6754808 1150..1087 320 100 Minus
3L 28110227 3L 6755073..6755123 1087..1037 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6748520..6749261 1036..295 3710 100 Minus
3L 28103327 3L 6747116..6747596 1628..1148 2405 100 Minus
3L 28103327 3L 6749322..6749619 298..1 1490 100 Minus
3L 28103327 3L 6747845..6747908 1150..1087 320 100 Minus
3L 28103327 3L 6748173..6748223 1087..1037 255 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:43:01 has no hits.

LD14015.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:49 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6746403..6746873 1151..1627 98 <- Minus
chr3L 6747125..6747187 1088..1150 100 <- Minus
chr3L 6747453..6747503 1037..1087 100 <- Minus
chr3L 6747781..6748519 298..1036 99 <- Minus
chr3L 6748584..6748880 1..297 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:17 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 116..1369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:02 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 116..1369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:56 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 116..1369 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:39 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 116..1369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:35 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 116..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:57:58 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1627 1..1627 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:02 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1627 1..1627 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:56 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1605 23..1627 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:39 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1627 1..1627 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:35 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1605 23..1627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:49 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6754017..6754493 1151..1627 100 <- Minus
3L 6754745..6754807 1088..1150 100 <- Minus
3L 6755073..6755123 1037..1087 100 <- Minus
3L 6755420..6756158 298..1036 100 <- Minus
3L 6756223..6756519 1..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:49 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6754017..6754493 1151..1627 100 <- Minus
3L 6754745..6754807 1088..1150 100 <- Minus
3L 6755073..6755123 1037..1087 100 <- Minus
3L 6755420..6756158 298..1036 100 <- Minus
3L 6756223..6756519 1..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:49 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6754017..6754493 1151..1627 100 <- Minus
3L 6754745..6754807 1088..1150 100 <- Minus
3L 6755073..6755123 1037..1087 100 <- Minus
3L 6755420..6756158 298..1036 100 <- Minus
3L 6756223..6756519 1..297 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:56 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6747117..6747593 1151..1627 100 <- Minus
arm_3L 6747845..6747907 1088..1150 100 <- Minus
arm_3L 6748173..6748223 1037..1087 100 <- Minus
arm_3L 6748520..6749258 298..1036 100 <- Minus
arm_3L 6749323..6749619 1..297 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:03 Download gff for LD14015.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6747117..6747593 1151..1627 100 <- Minus
3L 6747845..6747907 1088..1150 100 <- Minus
3L 6748173..6748223 1037..1087 100 <- Minus
3L 6748520..6749258 298..1036 100 <- Minus
3L 6749323..6749619 1..297 100   Minus

LD14015.pep Sequence

Translation from 115 to 1368

> LD14015.pep
MFSSGPNYNKLKTNLRLALNRLKLLEKKKAELTQKSRKEIADYLATGKTE
RARIRVEHIIREDYLVEAMEMVEMYCDLLLARFGLITQMKELDTGIAEPV
ASLVWVCPRLQSDIAELKIISDIFVTKYGPQFAEQSRTATGEHYVSEKLM
HKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLIDLSD
RNNLSGGGGAGGGGAAPPQMGFIGYPAMPALPDMPMPPSAKPFNYPPFGG
GGGGGGGGAPAGAYALPHPVQAPPPFAYNIPPNQPPTHAVLPAKCAEEKD
LNTNFIDREANNTDGSGSPDENILRPKPENDPPPRYTSINPVNLQNANKP
KPQPRSKLPPGNPTLPSAPPALDFPSLPNVPNDLPDIPGAGAEKKNDEDE
IDFDDLSRRFENLKKRK*

LD14015.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10887-PA 411 GF10887-PA 1..411 1..417 1597 85.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15024-PA 418 GG15024-PA 1..418 1..417 2079 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15362-PA 416 GH15362-PA 1..416 1..417 1617 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-PA 417 CG10103-PA 1..417 1..417 2221 100 Plus
CG10103-PB 400 CG10103-PB 1..400 1..417 2104 95.9 Plus
CG10103-PC 396 CG10103-PC 1..396 1..417 2070 95 Plus
CG10103-PE 384 CG10103-PE 1..384 1..417 1992 92.1 Plus
CG10103-PD 379 CG10103-PD 1..379 1..417 1964 90.9 Plus
CG10103-PF 327 CG10103-PF 1..327 1..327 1715 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12963-PA 419 GI12963-PA 1..419 1..417 1681 81.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13232-PA 124 GL13232-PA 1..105 1..105 549 99 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10073-PA 420 GA10073-PA 1..420 1..417 1575 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13817-PA 420 GM13817-PA 1..420 1..417 2150 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13110-PA 79 GD13110-PA 1..55 1..55 271 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13108-PA 423 GJ13108-PA 1..423 1..417 1682 84.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12575-PA 415 GK12575-PA 1..415 1..417 1609 82.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20468-PA 417 GE20468-PA 1..417 1..417 2075 96.4 Plus

LD14015.hyp Sequence

Translation from 115 to 1368

> LD14015.hyp
MFSSGPNYNKLKTNLRLALNRLKLLEKKKAELTQKSRKEIADYLATGKTE
RARIRVEHIIREDYLVEAMEMVEMYCDLLLARFGLITQMKELDTGIAEPV
ASLVWVCPRLQSDIAELKIISDIFVTKYGPQFAEQSRTATGEHYVSEKLM
HKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLIDLSD
RNNLSGGGGAGGGGAAPPQMGFIGYPAMPALPDMPMPPSAKPFNYPPFGG
GGGGGGGGAPAGAYALPHPVQAPPPFAYNIPPNQPPTHAVLPAKCAEEKD
LNTNFIDREANNTDGSGSPDENILRPKPENDPPPRYTSINPVNLQNANKP
KPQPRSKLPPGNPTLPSAPPALDFPSLPNVPNDLPDIPGAGAEKKNDEDE
IDFDDLSRRFENLKKRK*

LD14015.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-PA 417 CG10103-PA 1..417 1..417 2221 100 Plus
CG10103-PB 400 CG10103-PB 1..400 1..417 2104 95.9 Plus
CG10103-PC 396 CG10103-PC 1..396 1..417 2070 95 Plus
CG10103-PE 384 CG10103-PE 1..384 1..417 1992 92.1 Plus
CG10103-PD 379 CG10103-PD 1..379 1..417 1964 90.9 Plus