Clone LD14064 Report

Search the DGRC for LD14064

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:140
Well:64
Vector:pBS SK-
Associated Gene/Transcriptldbr-RB
Protein status:LD14064.pep: gold
Preliminary Size:1914
Sequenced Size:1743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7942 2001-01-01 Release 2 assignment
CG7942 2002-06-06 Blastp of sequenced clone
CG7942 2008-04-29 Release 5.5 accounting
ldbr 2008-08-15 Release 5.9 accounting
ldbr 2008-12-18 5.12 accounting

Clone Sequence Records

LD14064.complete Sequence

1743 bp (1743 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119584

> LD14064.complete
TTATTTGTTTGGACAACCGGTTGCATTTGTTTACAACCAAGTTTTATTTA
TAAAGTAGTAACTTACCTTTATTAACCATGAAAATAGCTGTCGAAGGATG
TGCACATGGCGAGCTGGAACGAATATACGACACCATAGAGGGCATCGAAA
AGGTTGGCGGCACCAAGATCGACTTGTTATTGTGCTGTGGCGATTTTCAG
TCCACCCGGAATCTGGAGGATTTGCAGACGATGGCTGTACCAAAGAAGTA
CCTGGATATGTGCTCCTTTTACAAATACTACAGTGGCGAGCTGGTAGCAC
CAGTGCTGACCATATTCATTGGCGGCAACCATGAGGCCTCCAATTACCTG
CAGGAGCTCCCATACGGCGGTTGGGTGGCTCCAAATATTTACTACCTTGG
TTATGCCGGCGTCGTCAATGTAAACGGTGTTCGGATAGCTGGAATAAGCG
GAATCTTCAAGGGTCACGACTTTTTGCGCGGCCATCACGAATTCCCTCCG
TATACCGATTCCACGTGTCGCAGTGTCTACCATGTGCGGCAGCTAGAAGT
CTTTCGGCTGAAACAAATTTCCGGGCGAGTTGATATTTTCCTGTCCCACG
ACTGGCCCACCGGCATCTATGAATACGGAAACAAGGCGCAACTGCTCCGC
AAGAAACCATTTTTTGCTGCAGACATGGAAAGCGGGAAGCTGGGTAGCCA
GCCACTGGAGGAGTTACTGAAAGCGGTCCAACCGGCCTACTGGTTTGCTG
CCCATTTGCATTGCAAGTTTGCCGCTTTGGTGCCGCACAATCACAGCCAG
AAGCTAGGAGATGCTGAATCTTCCTCTTCCAGCAGCAGCAGTGAAGATGA
AGACGAGGAAAGGGAGAAGGTAAAGAAAGCTGCTCCTGTACCTCCACCAT
CCAAATCTGTTCCCGTGACCAAGTTTCTGGCTCTCGACAAATGCCTGCCA
CGTCGTGCTTTCCTGCAAGTGGTAGAGGTACCCAGTGACCCCATCGAAGG
CACTCCCCGCCTGGAATACGACGCAGAGTGGCTAGCCATCTTGCACAGTA
CAAATCACTTGATTTCAGTGAAGGAGAATTATTATTACCTGCCCGGAAAA
AAGGCGGGAGAGTTTACAGAGCGATCAAACTTTACCCCCACTGAAGAAGA
ACTAGAAGCAGTGACCGCAAAGTTTCAGAAACTTCAAGTCCCCGAGAACT
TTGAGCGCACAGTGCCAGCTTTCGATCCCGCGGAGCAGTCTGATTATAAG
CACATGTTTGTGGATCAACCCAAGGTTCAACTAAACCCCCAGAGCAATAC
GTTCTGTGCCACTCTGGGTATAGACGATCCGCTGTGCTTAGTTTTGTTGG
CGAATGGCCTAGATCTGCCTGCGGTGGGAGCTACCGAATGCAAGGATAGG
GAAACAAAAAGTTCTAAGCTGCAGGCGGTGGAAGAAGACGTGGCTGAACC
ATTGGTTACGCCAACTAAAAGGAAACTTAACTTATCCCTGCCAGCACCTA
CAACTGCAGCAGCTGATACCACCGATGAAAACGTGATAGACCTGCCCGAG
GAGGAAGCTGAAGAAGCAATTATAGCAACGGAAACGCCTCATGTAGAGGA
ACCTGCATCAGTGCCCGCTAGTCCCAATGTGAAAAAACTTAAGCGACGCA
ATCAGAACATTTACCAAGCGCAAGAAGATTAAACCCAAACAAATTCCGTG
AAAGCGGAGCGATTTATACAAAAAAAAAAAAAAAAAAAAAAAA

LD14064.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
ldbr-RA 2006 ldbr-RA 278..2003 1..1726 8630 100 Plus
ldbr-RB 1770 ldbr-RB 42..1767 1..1726 8630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8114204..8115656 267..1719 7220 99.8 Plus
chr3L 24539361 chr3L 8113883..8114156 1..274 1370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8122163..8123622 267..1726 7270 99.9 Plus
3L 28110227 3L 8121842..8122115 1..274 1370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8115263..8116722 267..1726 7270 99.8 Plus
3L 28103327 3L 8114942..8115215 1..274 1370 100 Plus
Blast to na_te.dros performed 2019-03-15 18:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 29..81 1037..1089 129 75.9 Plus

LD14064.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:13 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8113883..8114156 1..274 100 -> Plus
chr3L 8114212..8115656 275..1719 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:23 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1605 78..1682 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:00 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1605 78..1682 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:19 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1605 78..1682 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:06 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1605 78..1682 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:35 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1605 78..1682 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:55 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:00 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:19 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 16..1734 1..1719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:06 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:35 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
ldbr-RB 16..1734 1..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:13 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8121842..8122115 1..274 100 -> Plus
3L 8122171..8123615 275..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:13 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8121842..8122115 1..274 100 -> Plus
3L 8122171..8123615 275..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:13 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8121842..8122115 1..274 100 -> Plus
3L 8122171..8123615 275..1719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:19 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8114942..8115215 1..274 100 -> Plus
arm_3L 8115271..8116715 275..1719 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:54 Download gff for LD14064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8114942..8115215 1..274 100 -> Plus
3L 8115271..8116715 275..1719 100   Plus

LD14064.pep Sequence

Translation from 77 to 1681

> LD14064.pep
MKIAVEGCAHGELERIYDTIEGIEKVGGTKIDLLLCCGDFQSTRNLEDLQ
TMAVPKKYLDMCSFYKYYSGELVAPVLTIFIGGNHEASNYLQELPYGGWV
APNIYYLGYAGVVNVNGVRIAGISGIFKGHDFLRGHHEFPPYTDSTCRSV
YHVRQLEVFRLKQISGRVDIFLSHDWPTGIYEYGNKAQLLRKKPFFAADM
ESGKLGSQPLEELLKAVQPAYWFAAHLHCKFAALVPHNHSQKLGDAESSS
SSSSSEDEDEEREKVKKAAPVPPPSKSVPVTKFLALDKCLPRRAFLQVVE
VPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERS
NFTPTEEELEAVTAKFQKLQVPENFERTVPAFDPAEQSDYKHMFVDQPKV
QLNPQSNTFCATLGIDDPLCLVLLANGLDLPAVGATECKDRETKSSKLQA
VEEDVAEPLVTPTKRKLNLSLPAPTTAAADTTDENVIDLPEEEAEEAIIA
TETPHVEEPASVPASPNVKKLKRRNQNIYQAQED*

LD14064.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23959-PA 528 GF23959-PA 1..528 1..534 2056 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14471-PA 534 GG14471-PA 1..534 1..534 2553 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16171-PA 551 GH16171-PA 1..549 1..534 1910 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
ldbr-PB 534 CG7942-PB 1..534 1..534 2807 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13323-PA 544 GI13323-PA 1..543 1..534 1908 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22609-PA 538 GL22609-PA 1..537 1..534 2049 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20707-PA 537 GA20707-PA 1..536 1..534 2058 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25021-PA 531 GM25021-PA 1..531 1..534 2736 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14054-PA 531 GD14054-PA 1..531 1..534 2732 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12093-PA 545 GJ12093-PA 1..544 1..534 1898 67.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19869-PA 536 GK19869-PA 1..535 1..534 1934 68.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21659-PA 530 GE21659-PA 1..530 1..534 2534 91.6 Plus

LD14064.hyp Sequence

Translation from 77 to 1681

> LD14064.hyp
MKIAVEGCAHGELERIYDTIEGIEKVGGTKIDLLLCCGDFQSTRNLEDLQ
TMAVPKKYLDMCSFYKYYSGELVAPVLTIFIGGNHEASNYLQELPYGGWV
APNIYYLGYAGVVNVNGVRIAGISGIFKGHDFLRGHHEFPPYTDSTCRSV
YHVRQLEVFRLKQISGRVDIFLSHDWPTGIYEYGNKAQLLRKKPFFAADM
ESGKLGSQPLEELLKAVQPAYWFAAHLHCKFAALVPHNHSQKLGDAESSS
SSSSSEDEDEEREKVKKAAPVPPPSKSVPVTKFLALDKCLPRRAFLQVVE
VPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERS
NFTPTEEELEAVTAKFQKLQVPENFERTVPAFDPAEQSDYKHMFVDQPKV
QLNPQSNTFCATLGIDDPLCLVLLANGLDLPAVGATECKDRETKSSKLQA
VEEDVAEPLVTPTKRKLNLSLPAPTTAAADTTDENVIDLPEEEAEEAIIA
TETPHVEEPASVPASPNVKKLKRRNQNIYQAQED*

LD14064.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
ldbr-PB 534 CG7942-PB 1..534 1..534 2807 100 Plus