BDGP Sequence Production Resources |
Search the DGRC for LD14068
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 140 |
Well: | 68 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rtnl1-RB |
Protein status: | LD14068.pep: gold |
Preliminary Size: | 1755 |
Sequenced Size: | 1526 |
Gene | Date | Evidence |
---|---|---|
CG33113 | 2001-11-29 | Blastp of sequenced clone |
Rtnl1 | 2008-04-29 | Release 5.5 accounting |
Rtnl1 | 2008-08-15 | Release 5.9 accounting |
Rtnl1 | 2008-12-18 | 5.12 accounting |
1526 bp (1526 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069432
> LD14068.complete CATTTTAACTTTACACATTTGTGTATTATAACTACATATAACAATACCAT CCTGACCGCAGATATAGAATTTATTTTAATTTTACTTGTGCGTTGTGTTG ATCGGTAAACAAAGGCGGAAATCCGAAGAGTGGAGCCGAGTAAACAATTT ACTGTCCAATAAAAAGGATAACTCGTAGTGCTAACGAAGAAGTGTGCTAA GCAAAAAGCAAAACCCAAATTAAAACCAGCATAATGTCCGCATTTGGTGA AACCGGTCAGAATGGCGTGTGCAAGCAGCGCCCATTGATTTGCTCCATAC TCGATCCCAATGCCTGGTTTAAGCCCGAACGTTTGCACCCGCAAGTGGAA TCCCTTATCTACTGGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGC TGGCCTGATCACACTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGT TCGCCTACTTGTCGCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATC TACAAATCTGTGACACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTT TAAGGATTACCTGGAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGA ACATTGCCGGCGTGGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTG AGGCGTCTGTTTCTTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGT CATTCTGTGGGTCTTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTC TGGTCATCTTGGCCTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAG AACAACAAGCAATCGATCGACACTCACTTGGATCTGGTGCGCAGCAAATT GACAGAAATCACCGACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGA AGCCCGAGGCCGCTGCCGAGTCTGAGAAGGACAAGTAAAGAACCCGCACT AGCAAGAGAAACAACCACAAATAAACATGTTTATTTATTTATTAAGCATT ATTTGAATGGTTTTAATATTCATCCAGGCATTAAATAAATAACAAGTCTA GCAGCAATGTTTACATATTAATTGTATAATTGCAATCAACATCAATCGAT AATTGTAAATCAAATTTGAAGAGACCCAAAACAATTTATCAACCAACAAC TCGTAGCAGTTTCAAACATTGTCCAAGTGTCTTTAAGTTTTTAACGAACG AAACATTTAAAAAGCATATATAGTGAGGGAAATTAAGAAGAAAACGATTA TATAGACGCAGCAATGCAAATAAATTTCTTATGAGTTCCACGCAATTTCC GATTTGAATCAACTATCTTCATTTCGATTTATTCAGCTTTCTTAGTTTTC ATGTGACCCTTTTTAAATTAATTCTTTGCTTTAGTTTTAGTTTTACTATT TTGTTGATTTTTTGTATAAAACAACAAGAAGAACTAAGATTACTCTTAAA AACAAACAAACAAGAAAAAATCAAATAAAAAATGAAGTAAAAATCCACAA CTAATAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1.g | 2311 | Rtnl1.g | 78..1582 | 1..1505 | 7525 | 100 | Plus |
Rtnl1-RB | 1720 | Rtnl1-RB | 78..1582 | 1..1505 | 7525 | 100 | Plus |
Rtnl1-RI | 1496 | Rtnl1-RI | 140..1496 | 149..1505 | 6785 | 100 | Plus |
Rtnl1-RI | 1496 | Rtnl1-RI | 36..139 | 1..104 | 520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4992741..4993377 | 1505..869 | 3185 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993886..4994096 | 554..344 | 1055 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993608..4993816 | 762..554 | 1045 | 100 | Minus |
chr2L | 23010047 | chr2L | 5003714..5003874 | 309..149 | 805 | 100 | Minus |
chr2L | 23010047 | chr2L | 5005484..5005631 | 148..1 | 740 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993438..4993545 | 869..762 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993641..4994277 | 1505..869 | 3185 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994996 | 554..344 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 762..554 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004774 | 309..149 | 805 | 100 | Minus |
2L | 23513712 | 2L | 5006384..5006531 | 148..1 | 740 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 869..762 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993641..4994277 | 1505..869 | 3185 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994996 | 554..344 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 762..554 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004774 | 309..149 | 805 | 100 | Minus |
2L | 23513712 | 2L | 5006384..5006531 | 148..1 | 740 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 869..762 | 540 | 100 | Minus |
2L | 23513712 | 2L | 5004172..5004207 | 345..310 | 180 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 843..904 | 1041..981 | 118 | 67.7 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5753..5844 | 1235..1328 | 114 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4992741..4993377 | 869..1505 | 100 | <- | Minus |
chr2L | 4993439..4993544 | 763..868 | 100 | <- | Minus |
chr2L | 4993608..4993816 | 554..762 | 100 | <- | Minus |
chr2L | 4993887..4994094 | 346..553 | 100 | <- | Minus |
chr2L | 5003272..5003307 | 310..345 | 100 | <- | Minus |
chr2L | 5003714..5003874 | 149..309 | 100 | <- | Minus |
chr2L | 5005484..5005631 | 1..148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 1..705 | 234..938 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RI | 1..705 | 234..938 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 1..705 | 234..938 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 1..705 | 234..938 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 1..705 | 234..938 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 33..1537 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 36..1540 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 35..1539 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 33..1537 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RB | 35..1539 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 346..553 | 100 | <- | Minus |
2L | 5004172..5004207 | 310..345 | 100 | <- | Minus |
2L | 5004614..5004774 | 149..309 | 100 | <- | Minus |
2L | 5006384..5006531 | 1..148 | 100 | Minus | |
2L | 4994508..4994716 | 554..762 | 100 | <- | Minus |
2L | 4993641..4994277 | 869..1505 | 100 | <- | Minus |
2L | 4994339..4994444 | 763..868 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 346..553 | 100 | <- | Minus |
2L | 5004172..5004207 | 310..345 | 100 | <- | Minus |
2L | 5004614..5004774 | 149..309 | 100 | <- | Minus |
2L | 5006384..5006531 | 1..148 | 100 | Minus | |
2L | 4994508..4994716 | 554..762 | 100 | <- | Minus |
2L | 4993641..4994277 | 869..1505 | 100 | <- | Minus |
2L | 4994339..4994444 | 763..868 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 346..553 | 100 | <- | Minus |
2L | 5004172..5004207 | 310..345 | 100 | <- | Minus |
2L | 5004614..5004774 | 149..309 | 100 | <- | Minus |
2L | 5006384..5006531 | 1..148 | 100 | Minus | |
2L | 4994508..4994716 | 554..762 | 100 | <- | Minus |
2L | 4993641..4994277 | 869..1505 | 100 | <- | Minus |
2L | 4994339..4994444 | 763..868 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 5004614..5004774 | 149..309 | 100 | <- | Minus |
arm_2L | 5006384..5006531 | 1..148 | 100 | Minus | |
arm_2L | 4993641..4994277 | 869..1505 | 100 | <- | Minus |
arm_2L | 4994339..4994444 | 763..868 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 554..762 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 346..553 | 100 | <- | Minus |
arm_2L | 5004172..5004207 | 310..345 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4993641..4994277 | 869..1505 | 100 | <- | Minus |
2L | 4994339..4994444 | 763..868 | 100 | <- | Minus |
2L | 4994508..4994716 | 554..762 | 100 | <- | Minus |
2L | 4994787..4994994 | 346..553 | 100 | <- | Minus |
2L | 5004172..5004207 | 310..345 | 100 | <- | Minus |
2L | 5004614..5004774 | 149..309 | 100 | <- | Minus |
2L | 5006384..5006531 | 1..148 | 100 | Minus |
Translation from 233 to 937
> LD14068.pep MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14162-PA | 596 | GF14162-PA | 389..596 | 26..234 | 1014 | 91.9 | Plus |
Dana\GF17296-PA | 259 | GF17296-PA | 5..185 | 24..203 | 265 | 32.8 | Plus |
Dana\GF10829-PA | 294 | GF10829-PA | 19..182 | 22..189 | 233 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24328-PA | 607 | GG24328-PA | 399..607 | 26..234 | 1054 | 95.7 | Plus |
Dere\GG25105-PA | 246 | GG25105-PA | 3..165 | 38..199 | 222 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11424-PA | 234 | GH11424-PA | 1..234 | 1..234 | 1110 | 88.9 | Plus |
Dgri\GH17123-PA | 245 | GH17123-PA | 3..161 | 39..196 | 163 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PJ | 234 | CG33113-PJ | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 1..222 | 1..234 | 1093 | 94.4 | Plus |
Rtnl1-PH | 607 | CG33113-PH | 399..607 | 26..234 | 1052 | 99.5 | Plus |
Rtnl1-PA | 222 | CG33113-PA | 14..222 | 26..234 | 989 | 95.7 | Plus |
Rtnl1-PF | 595 | CG33113-PF | 399..595 | 38..234 | 984 | 100 | Plus |
Rtnl1-PC | 202 | CG33113-PC | 6..202 | 38..234 | 981 | 99.5 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 28..224 | 38..234 | 981 | 99.5 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 28..224 | 38..234 | 981 | 99.5 | Plus |
Rtnl2-PC | 255 | CG1279-PC | 19..216 | 38..234 | 232 | 31.8 | Plus |
Rtnl2-PB | 255 | CG1279-PB | 19..216 | 38..234 | 232 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14630-PA | 234 | GI14630-PA | 1..234 | 1..234 | 1138 | 91.5 | Plus |
Dmoj\GI11728-PA | 258 | GI11728-PA | 13..175 | 39..200 | 260 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26483-PA | 571 | GL26483-PA | 375..571 | 38..234 | 964 | 93.4 | Plus |
Dper\GL12168-PA | 319 | GL12168-PA | 25..190 | 37..199 | 217 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28881-PA | 224 | GA28881-PA | 25..224 | 35..234 | 956 | 91.5 | Plus |
Dpse\GA11813-PA | 298 | GA11813-PA | 2..164 | 37..196 | 218 | 29.4 | Plus |
Dpse\GA11813-PB | 321 | GA11813-PB | 25..187 | 37..196 | 218 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18049-PA | 234 | GM18049-PA | 1..234 | 1..234 | 1226 | 99.6 | Plus |
Dsec\GM10472-PA | 238 | GM10472-PA | 3..205 | 38..234 | 217 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22669-PA | 234 | GD22669-PA | 1..234 | 1..234 | 1226 | 99.6 | Plus |
Dsim\GD19473-PA | 238 | GD19473-PA | 3..205 | 38..234 | 225 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17140-PA | 236 | GJ17140-PA | 1..234 | 1..234 | 1131 | 90.2 | Plus |
Dvir\GJ11400-PA | 265 | GJ11400-PA | 5..208 | 32..225 | 289 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24458-PA | 587 | GK24458-PA | 377..585 | 26..234 | 1019 | 91.9 | Plus |
Dwil\GK11074-PA | 247 | GK11074-PA | 12..179 | 34..200 | 292 | 35.7 | Plus |
Dwil\GK19145-PA | 159 | GK19145-PA | 10..156 | 29..175 | 142 | 25.2 | Plus |
Translation from 233 to 937
> LD14068.hyp MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PJ | 234 | CG33113-PJ | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 1..222 | 1..234 | 1093 | 94.4 | Plus |