Clone LD14121 Report

Search the DGRC for LD14121

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:141
Well:21
Vector:pBS SK-
Associated Gene/Transcriptdgt6-RA
Protein status:LD14121.pep: gold
Preliminary Size:2118
Sequenced Size:2183

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11881 2001-01-01 Release 2 assignment
CG11881 2001-11-29 Blastp of sequenced clone
CG11881 2003-01-01 Sim4 clustering to Release 3
dgt6 2008-04-29 Release 5.5 accounting
dgt6 2008-08-15 Release 5.9 accounting
dgt6 2008-12-18 5.12 accounting

Clone Sequence Records

LD14121.complete Sequence

2183 bp (2183 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069433

> LD14121.complete
CTAAACCGCCATATTTTACTTAATTTCTGTGCTAAAATATGGATCGGACC
ATAATTGCACCGTGGAAGGCCGAAGAGAAGGAGCAGAGCGAGAAGCTCCA
CAGGAAGCTGCAGGGACTGGCCCTGGTGCACCCCCTGCCGGACGAGCTGC
GTAAGCTGATTGCCTGGGACATGTTCCTCAAGCCCAACCAGGTGGCCTTC
GTGCATGTGATGCACTACCTCTTCCGTCTGCTGGATCCCGCGGAGTTCAA
ACGCCGCTTCTTCTGGCCCATCACCGACAAGAAGTCGGAGGCGAACTTTC
GCTCCAGCACGGTGGAGTATCTGAAGCATCTGAACGAGAAGCACCAGCTG
CATTGGGCCAACATCAAGTCGTATCTGGTGGTGATGCCCGGAGGCATGAG
GTTCATCAACTTCCTGCTCGAGTTCGTGGGCTTCGTGATCCAGGAGCTCA
TCAAGCAGCGCGAGAAGTCACTTGGCTTAGAGGCGGGAACACCAAACGTG
AGCGCCAAGGTCATGGCCCGCCAAAATGCCGTGATGAAGGAGTACGCTTC
TTCGTATGTGGTCAATCTGGAGGAGAATACGGCCCTGTTGCGGGACAAGA
CCCAGAAGATCAGACGCCTGATGGCCGATCTGTCTGCAGACATGGGAGTG
CCCGAGGAGCAACTGGCGGACGATGGCTTTCTGGATGAGTTCGAGGCCAC
CGCTGCACTCGGCGTGGAGCGGGTCATTACCCAACCCACCGAAAGGAAAT
TCGACCTGGAGGCATCTCTGTGCGGTCTCAAGGAGGCCATCGATCTTTTC
CAGGTGAAGCAAGCCGAGAACAACCAGAGCAAGGAGGCGGTGGAGAAGGC
ACTTCGGGGCATGCGAGTGCTGTTCGACTGTGATGCAGTCACAGAAGGAG
ATTTCTACGATCCTTTGGGCGCATCAAAAATGGATGCGCTCTTAAACGGC
TTTAATCGGATCAGCGGCACAATTGCCGAGCAACTGGATGCTAATGACCA
CTACAACGAATCGAATGCGTTTGTCACCACCGATTTGCAGGCTCTTCGAG
TGGAACTTTCACAGTCCGAAGTCCAATTGAACAATTTACTCAAGAAACTA
AACGAACCGTCCAAAAAGGACAAGGGAAGTGCCAATGCAAGTGGCTCCGC
CAGGGTACAGACGCTTCAGCCGGCCACGCCTCGCTTCGAATCGGTTATCA
GCTCCAAATTTGTTTCCACGCCTCCCATCAGAATCGACATGGGCGGCGGT
GGCGGTCGCAATGCCCCAGTGCGTCTTGCACTGCAAGATGACTTCAATGG
CAAACAGTTTGATGCCTTAAGCAACAGCTTACTCGCACCTGCGCCGCCTC
GATCAGCACGCAAGCTGAAAGCCCTTGATCAATCGACCGGCATTGACCTT
AATGGCACTTTAAACCGATCCAAGATCAACGATCCCATGCAAATGCTGCG
CACCATTCACAAAAACACCTCCAAGGTCAAGGCAGCTCCGCAGGCGAATC
TCTCCTCCCTGGGCAGCAAGTGGAAGCAAATGCAAGCGTCATTCGGTTTC
GATGAGGCGCCGGTGCCAGGAGCAGCAGTGATCTCACCTCAGACCTCACC
AACGGATCCCAGCGATCCCTTTACACCCTTGAGTGGTAGCGAGTGCACCC
GAATTGAGCGCATTCCGCGCACTTCGGAAAACAACACTTCACTGATCGCC
AAGAGCGCTGCGGTTATAAAGGTCCTGGAGGTATCACGGAATGTGCTTAA
TCTTAGCACCTCGCCATCTGGACGCCTAGATGCACTGGTTCCACATACCG
AGAGCCACCAGCAAGATGTCGCGCCACGTCTTCAGCTCAACGACAGAACA
ATCAATGACTCACTGCAGCTTGATCCCGATTTCAACATTGAAAACGATAA
GAATGCATTCAATGTCTCGCATAAATTCGATTTTGATCAGATTGGTGGTG
AGGATGACCTGCAGAACATCAGCGATAGCGTGCTCAAGGATATTATCTTT
TAGTCCACGGGAATCGCGAATGGCCAATATTGTTTAGGTAATAGATTTTG
TATTCTTTTTCTAATTGGTTATGAGGTTTTTAAACGAAATATACTTTTTA
CTTTAGTTTTTAATATTACCCATATGAAATTAAAACTAAAATCTTTCAGC
TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD14121.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
dgt6-RA 2310 dgt6-RA 75..2230 1..2156 10780 100 Plus
dgt6.b 2429 dgt6.b 21..2176 1..2156 10780 100 Plus
dgt6.a 2169 dgt6.a 1..1856 1..1856 9280 100 Plus
dgt6.a 2169 dgt6.a 1873..2169 1857..2153 1485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24952928..24953827 900..1 4500 100 Minus
chr3R 27901430 chr3R 24951844..24952366 1857..1335 2600 99.8 Minus
chr3R 27901430 chr3R 24952427..24952863 1335..899 2155 99.5 Minus
chr3R 27901430 chr3R 24951482..24951778 2153..1857 1455 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29130030..29130929 900..1 4500 100 Minus
3R 32079331 3R 29128946..29129468 1857..1335 2615 100 Minus
3R 32079331 3R 29129529..29129965 1335..899 2185 100 Minus
3R 32079331 3R 29128581..29128880 2156..1857 1500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28870861..28871760 900..1 4500 100 Minus
3R 31820162 3R 28869777..28870299 1857..1335 2615 100 Minus
3R 31820162 3R 28870360..28870796 1335..899 2185 100 Minus
3R 31820162 3R 28869412..28869711 2156..1857 1500 100 Minus
Blast to na_te.dros performed 2019-03-16 19:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 993..1066 2117..2046 122 64.9 Minus

LD14121.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:15:13 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24951482..24951778 1857..2153 99 <- Minus
chr3R 24951845..24952365 1336..1856 99 <- Minus
chr3R 24952427..24952861 901..1335 99 <- Minus
chr3R 24952928..24953827 1..900 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:27 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..1965 39..2003 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:04 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..1965 39..2003 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..1965 39..2003 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:40 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..1965 39..2003 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:33 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..1965 39..2003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:00 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..2153 1..2153 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:04 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..2153 1..2153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 44..2196 1..2153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:40 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 1..2153 1..2153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:33 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
dgt6-RA 44..2196 1..2153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:13 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29128584..29128880 1857..2153 100 <- Minus
3R 29128947..29129467 1336..1856 100 <- Minus
3R 29129529..29129963 901..1335 100 <- Minus
3R 29130030..29130929 1..900 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:13 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29128584..29128880 1857..2153 100 <- Minus
3R 29128947..29129467 1336..1856 100 <- Minus
3R 29129529..29129963 901..1335 100 <- Minus
3R 29130030..29130929 1..900 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:13 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29128584..29128880 1857..2153 100 <- Minus
3R 29128947..29129467 1336..1856 100 <- Minus
3R 29129529..29129963 901..1335 100 <- Minus
3R 29130030..29130929 1..900 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:27 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24954306..24954602 1857..2153 100 <- Minus
arm_3R 24954669..24955189 1336..1856 100 <- Minus
arm_3R 24955251..24955685 901..1335 100 <- Minus
arm_3R 24955752..24956651 1..900 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:05 Download gff for LD14121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28869415..28869711 1857..2153 100 <- Minus
3R 28869778..28870298 1336..1856 100 <- Minus
3R 28870360..28870794 901..1335 100 <- Minus
3R 28870861..28871760 1..900 100   Minus

LD14121.pep Sequence

Translation from 38 to 2002

> LD14121.pep
MDRTIIAPWKAEEKEQSEKLHRKLQGLALVHPLPDELRKLIAWDMFLKPN
QVAFVHVMHYLFRLLDPAEFKRRFFWPITDKKSEANFRSSTVEYLKHLNE
KHQLHWANIKSYLVVMPGGMRFINFLLEFVGFVIQELIKQREKSLGLEAG
TPNVSAKVMARQNAVMKEYASSYVVNLEENTALLRDKTQKIRRLMADLSA
DMGVPEEQLADDGFLDEFEATAALGVERVITQPTERKFDLEASLCGLKEA
IDLFQVKQAENNQSKEAVEKALRGMRVLFDCDAVTEGDFYDPLGASKMDA
LLNGFNRISGTIAEQLDANDHYNESNAFVTTDLQALRVELSQSEVQLNNL
LKKLNEPSKKDKGSANASGSARVQTLQPATPRFESVISSKFVSTPPIRID
MGGGGGRNAPVRLALQDDFNGKQFDALSNSLLAPAPPRSARKLKALDQST
GIDLNGTLNRSKINDPMQMLRTIHKNTSKVKAAPQANLSSLGSKWKQMQA
SFGFDEAPVPGAAVISPQTSPTDPSDPFTPLSGSECTRIERIPRTSENNT
SLIAKSAAVIKVLEVSRNVLNLSTSPSGRLDALVPHTESHQQDVAPRLQL
NDRTINDSLQLDPDFNIENDKNAFNVSHKFDFDQIGGEDDLQNISDSVLK
DIIF*

LD14121.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22941-PA 649 GF22941-PA 1..647 1..652 2211 66.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12037-PA 656 GG12037-PA 1..656 1..654 3243 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21273-PA 661 GH21273-PA 1..659 1..652 1622 53.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
dgt6-PA 654 CG11881-PA 1..654 1..654 3329 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10490-PA 660 GI10490-PA 1..660 1..654 1597 52.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23605-PA 667 GL23605-PA 1..665 1..652 1904 58.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11256-PA 664 GA11256-PA 1..662 1..652 1899 58.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12262-PA 654 GM12262-PA 1..654 1..654 3384 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17971-PA 654 GD17971-PA 1..654 1..654 3404 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23171-PA 656 GJ23171-PA 1..656 1..654 1627 53.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11189-PA 624 GK11189-PA 1..622 1..652 1465 49.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10475-PA 655 GE10475-PA 1..655 1..654 3242 93.2 Plus

LD14121.hyp Sequence

Translation from 38 to 2002

> LD14121.hyp
MDRTIIAPWKAEEKEQSEKLHRKLQGLALVHPLPDELRKLIAWDMFLKPN
QVAFVHVMHYLFRLLDPAEFKRRFFWPITDKKSEANFRSSTVEYLKHLNE
KHQLHWANIKSYLVVMPGGMRFINFLLEFVGFVIQELIKQREKSLGLEAG
TPNVSAKVMARQNAVMKEYASSYVVNLEENTALLRDKTQKIRRLMADLSA
DMGVPEEQLADDGFLDEFEATAALGVERVITQPTERKFDLEASLCGLKEA
IDLFQVKQAENNQSKEAVEKALRGMRVLFDCDAVTEGDFYDPLGASKMDA
LLNGFNRISGTIAEQLDANDHYNESNAFVTTDLQALRVELSQSEVQLNNL
LKKLNEPSKKDKGSANASGSARVQTLQPATPRFESVISSKFVSTPPIRID
MGGGGGRNAPVRLALQDDFNGKQFDALSNSLLAPAPPRSARKLKALDQST
GIDLNGTLNRSKINDPMQMLRTIHKNTSKVKAAPQANLSSLGSKWKQMQA
SFGFDEAPVPGAAVISPQTSPTDPSDPFTPLSGSECTRIERIPRTSENNT
SLIAKSAAVIKVLEVSRNVLNLSTSPSGRLDALVPHTESHQQDVAPRLQL
NDRTINDSLQLDPDFNIENDKNAFNVSHKFDFDQIGGEDDLQNISDSVLK
DIIF*

LD14121.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
dgt6-PA 654 CG11881-PA 1..654 1..654 3329 100 Plus