Clone LD14168 Report

Search the DGRC for LD14168

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:141
Well:68
Vector:pBS SK-
Associated Gene/TranscriptCpsf100-RA
Protein status:LD14168.pep: gold
Preliminary Size:2403
Sequenced Size:2387

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1957 2001-01-01 Release 2 assignment
CG1957 2002-12-11 Blastp of sequenced clone
CG1957 2003-01-01 Sim4 clustering to Release 3
CG1957 2008-04-29 Release 5.5 accounting
CG1957 2008-08-15 Release 5.9 accounting
CG1957 2008-12-18 5.12 accounting

Clone Sequence Records

LD14168.complete Sequence

2387 bp (2387 high quality bases) assembled on 2002-12-11

GenBank Submission: AF160933

> LD14168.complete
TGGTTTAATTGGCAAAAATGACCTCCATTATCAAGCTGCACACTATATCT
GGGGCGATGGACGAGTCCCCGCCATGCTATATCCTACAGATAGACGATGT
GCGGATATTACTTGACTGCGGATGGGACGAAAAGTTCGATGCCAACTTTA
TCAAGGAACTGAAGAGGCAGGTGCACACCCTGGACGCCGTGCTGCTATCC
CATCCGGATGCATATCATCTTGGAGCCCTGCCATACTTGGTGGGCAAGCT
GGGGCTCAATTGCCCCATCTACGCCACCATTCCCGTGTTCAAAATGGGTC
AAATGTTTATGTATGACCTTTACATGTCGCACTTCAATATGGGAGACTTC
GATCTATTTTCGCTGGACGACGTGGACACGGCTTTCGAAAAGATAACCCA
GTTGAAATACAACCAAACAGTTTCACTGAAGGACAAAGGATATGGAATAT
CCATTACGCCTTTGAACGCTGGACACATGATCGGCGGCACCATCTGGAAG
ATCGTCAAGGTGGGCGAGGAGGATATTGTGTACGCCACCGACTTCAACCA
TAAGAAGGAGCGCCACTTAAGTGGCTGCGAGCTGGACAGGCTGCAAAGAC
CTTCGCTGCTCATTACCGACGCCTACAACGCACAGTACCAGCAGGCCAGA
AGGAGGGCCCGCGATGAAAAGCTAATGACCAACATCCTGCAAACGGTGCG
TAACAACGGCAATGTCCTGATAGCCGTGGATACGGCAGGACGAGTCCTGG
AGTTGGCCCACATGCTGGACCAGCTGTGGAAGAACAAGGAATCTGGGCTA
ATGGCCTACTCCCTGGCCCTTCTTAACAATGTGAGCTACAACGTGATTGA
GTTCGCCAAGTCGCAGATAGAATGGATGAGTGACAAGCTCACGAAGGCTT
TCGAAGGTGCCCGCAACAATCCCTTTCAGTTCAAGCACATCCAGCTGTGC
CATTCACTGGCGGACGTCTATAAATTGCCCGCTGGTCCAAAAGTGGTGTT
GGCCAGTACCCCAGATCTGGAGAGCGGATTCACGAGGGATCTCTTCGTGC
AATGGGCCAGCAATGCCAACAATAGCATAATCCTTACTACTCGTACGTCT
CCCGGCACTTTAGCCATGGAACTGGTGGAGAACTGCGCACCGGGCAAGCA
AATCGAATTGGACGTCAGGCGAAGAGTTGACTTAGAAGGAGCTGAGTTGG
AGGAGTACCTACGCACACAGGGCGAGAAACTTAATCCCCTTATCGTAAAG
CCCGATGTGGAGGAAGAGAGCAGTTCCGAGTCCGAGGACGACATCGAGAT
GAGCGTCATCACGGGCAAGCATGATATTGTGGTCAGACCGGAGGGTCGCC
ATCACTCCGGTTTTTTCAAGTCCAACAAACGACACCACGTGATGTTCCCC
TATCACGAGGAAAAGGTGAAGTGCGATGAGTATGGGGAGATCATCAATCT
AGACGACTACCGGATTGCGGATGCGACAGGCTATGAGTTTGTACCTATGG
AGGAGCAAAACAAGGAGAATGTTAAAAAGGAAGAACCGGGCATAGGAGCA
GAACAACAGGCTAACGGAGGAATCGTCGACAATGATGTTCAGTTGCTGGA
GAAGCCCACCAAGCTGATAAGCCAACGCAAAACAATCGAGGTGAATGCCC
AAGTCCAGAGGATCGATTTCGAAGGTCGCTCTGATGGCGAGTCCATGCTA
AAGATCCTCTCCCAGTTGAGGCCACGAAGGGTTATCGTCATACACGGCAC
TGCCGAAGGCACACAAGTGGTGGCCAGGCACTGCGAACAGAATGTCGGTG
CGCGCGTTTTTACTCCGCAGAAGGGGGAAATCATTGATGTCACCAGTGAG
ATTCACATCTATCAGGTACGCCTGACGGAAGGACTTGTCTCCCAGCTGCA
GTTCCAAAAGGGCAAGGACGCGGAGGTGGCGTGGGTGGATGGTCGCCTGG
GCATGCGGGTGAAGGCCATCGAAGCACCCATGGACGTAACTGTGGAGCAG
GACGCTTCCGTGCAAGAAGGCAAGACATTGACTCTTGAAACACTGGCGGA
CGATGAGATTCCTATCCACAACTCAGTGCTCATTAACGAGCTGAAACTGT
CCGACTTTAAGCAGACTCTCATGCGTAATAACATCAACTCGGAGTTCTCC
GGCGGCGTGCTCTGGTGCAGCAACGGAACTCTGGCCTTGAGGCGAGTGGA
TGCCGGCAAGGTAGCCATGGAGGGATGCTTATCCGAGGAGTACTACAAGA
TCAGGGAGTTGCTGTACGAGCAGTATGCGATCGTTTAATATTCAAAATGA
CGTTTGTGTAAGCCCCTAATGTTTTACTTGTTAAGATTAGAAAGTTTTTA
TATAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD14168.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cpsf100-RA 2558 Cpsf100-RA 142..2501 1..2360 11800 100 Plus
Cpsf100.a 2257 Cpsf100.a 1..2257 98..2358 11220 99.8 Plus
Cpsf100-RB 2205 Cpsf100-RB 12..2205 165..2358 10970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24857814..24860007 165..2358 10955 100 Plus
chr3R 27901430 chr3R 24857591..24857757 1..167 835 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29034869..29037064 165..2360 10980 100 Plus
3R 32079331 3R 29034646..29034812 1..167 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28775700..28777895 165..2360 10980 100 Plus
3R 31820162 3R 28775477..28775643 1..167 835 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:20:10 has no hits.

LD14168.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:21:03 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24857591..24857756 1..166 100 -> Plus
chr3R 24857816..24860007 167..2358 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:30 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
CG1957-RA 1..2271 18..2288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:58 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 1..2271 18..2288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:15:13 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 1..2271 18..2288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:33 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
CG1957-RA 1..2271 18..2288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:15 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 1..2271 18..2288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:04 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
CG1957-RA 44..2401 1..2358 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:58 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 44..2401 1..2358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:15:13 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 74..2431 1..2358 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:33 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
CG1957-RA 44..2401 1..2358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:15 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
Cpsf100-RA 74..2431 1..2358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:21:03 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29034871..29037062 167..2358 100   Plus
3R 29034646..29034811 1..166 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:21:03 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29034871..29037062 167..2358 100   Plus
3R 29034646..29034811 1..166 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:21:03 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29034871..29037062 167..2358 100   Plus
3R 29034646..29034811 1..166 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:15:13 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24860368..24860533 1..166 100 -> Plus
arm_3R 24860593..24862784 167..2358 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:18 Download gff for LD14168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28775702..28777893 167..2358 100   Plus
3R 28775477..28775642 1..166 100 -> Plus

LD14168.pep Sequence

Translation from 17 to 2287

> LD14168.pep
MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKR
QVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYD
LYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLN
AGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLIT
DAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHML
DQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN
NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNA
NNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRT
QGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGFF
KSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKE
NVKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRID
FEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTP
QKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKA
IEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT
LMRNNINSEFSGGVLWCSNGTLALRRVDAGKVAMEGCLSEEYYKIRELLY
EQYAIV*

LD14168.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16269-PA 756 GF16269-PA 1..756 1..756 3861 95.4 Plus
Dana\GF23370-PA 597 GF23370-PA 4..383 5..392 369 26.5 Plus
Dana\GF18101-PA 684 GF18101-PA 15..370 2..366 328 24.4 Plus
Dana\GF10658-PA 655 GF10658-PA 1..428 5..362 210 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11633-PA 756 GG11633-PA 1..756 1..756 4018 98.5 Plus
Dere\GG11690-PA 597 GG11690-PA 4..383 5..392 374 26.5 Plus
Dere\GG16362-PA 684 GG16362-PA 15..370 2..366 313 23.8 Plus
Dere\GG13497-PA 654 GG13497-PA 1..428 5..362 218 23 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10247-PA 754 GH10247-PA 1..754 1..756 3657 90.6 Plus
Dgri\GH14325-PA 597 GH14325-PA 4..383 5..392 370 26.5 Plus
Dgri\GH19212-PA 686 GH19212-PA 17..372 2..366 325 24.7 Plus
Dgri\GH14706-PA 657 GH14706-PA 1..428 5..362 219 22.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cpsf100-PA 756 CG1957-PA 1..756 1..756 3911 100 Plus
IntS11-PA 597 CG1972-PA 4..383 5..392 359 26.5 Plus
Cpsf73-PA 684 CG7698-PA 15..370 2..366 301 24.4 Plus
IntS9-PA 654 CG5222-PA 1..428 5..362 202 22.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23051-PA 754 GI23051-PA 1..754 1..756 3654 90.2 Plus
Dmoj\GI10422-PA 597 GI10422-PA 4..383 5..392 371 26.5 Plus
Dmoj\GI24246-PA 686 GI24246-PA 17..372 2..366 316 24.1 Plus
Dmoj\GI12252-PA 659 GI12252-PA 1..428 5..362 214 22.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24248-PA 583 GL24248-PA 1..583 175..756 2811 91.8 Plus
Dper\GL24247-PA 154 GL24247-PA 1..148 1..148 797 98.6 Plus
Dper\GL23717-PA 597 GL23717-PA 4..383 5..392 368 26.5 Plus
Dper\GL23169-PA 684 GL23169-PA 15..370 2..366 322 24.4 Plus
Dper\GL25097-PA 657 GL25097-PA 1..428 5..362 217 22.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26549-PA 731 GA26549-PA 1..731 1..756 3603 90.6 Plus
Dpse\GA15164-PA 597 GA15164-PA 4..383 5..392 376 26.8 Plus
Dpse\GA20526-PA 684 GA20526-PA 15..370 2..366 322 24.4 Plus
Dpse\GA18747-PA 657 GA18747-PA 1..428 5..362 217 22.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12754-PA 743 GM12754-PA 1..743 1..756 3947 97.5 Plus
Dsec\GM12816-PA 597 GM12816-PA 4..383 5..392 369 26.5 Plus
Dsec\GM18692-PA 684 GM18692-PA 15..370 2..366 312 23.8 Plus
Dsec\GM24446-PA 654 GM24446-PA 1..428 5..362 217 23 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21403-PA 664 GD21403-PA 1..664 93..756 3530 98.8 Plus
Dsim\GD21460-PA 597 GD21460-PA 4..383 5..392 369 26.5 Plus
Dsim\GD20157-PA 684 GD20157-PA 15..370 2..366 312 23.8 Plus
Dsim\GD12515-PA 654 GD12515-PA 1..428 5..362 217 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24636-PA 693 GJ24636-PA 1..446 1..445 2230 94.4 Plus
Dvir\GJ24636-PA 693 GJ24636-PA 439..693 501..756 1189 88.4 Plus
Dvir\GJ10637-PA 597 GJ10637-PA 4..383 5..392 376 26.8 Plus
Dvir\GJ10819-PA 686 GJ10819-PA 17..372 2..366 316 24.1 Plus
Dvir\GJ11484-PA 658 GJ11484-PA 1..428 5..362 219 23 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22564-PA 757 GK22564-PA 1..757 1..756 3661 90.8 Plus
Dwil\GK11920-PA 597 GK11920-PA 4..383 5..392 371 26.5 Plus
Dwil\GK13096-PA 684 GK13096-PA 15..370 2..366 325 24.2 Plus
Dwil\GK23916-PA 659 GK23916-PA 1..428 5..362 213 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26465-PA 756 GE23822-PA 1..756 1..756 4020 98.5 Plus
Dyak\GE26465-PB 548 GE26465-PB 1..544 1..544 2909 98.5 Plus
Dyak\GE23879-PA 597 GE23879-PA 4..383 5..392 371 26.5 Plus
Dyak\GE25184-PA 684 GE25184-PA 15..370 2..366 311 23.8 Plus
Dyak\GE19796-PA 654 GE19796-PA 1..428 5..362 218 23 Plus

LD14168.hyp Sequence

Translation from 17 to 2287

> LD14168.hyp
MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKR
QVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYD
LYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLN
AGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLIT
DAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHML
DQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN
NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNA
NNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRT
QGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGFF
KSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKE
NVKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRID
FEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTP
QKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKA
IEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT
LMRNNINSEFSGGVLWCSNGTLALRRVDAGKVAMEGCLSEEYYKIRELLY
EQYAIV*

LD14168.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpsf100-PA 756 CG1957-PA 1..756 1..756 3911 100 Plus
IntS11-PA 597 CG1972-PA 4..383 5..392 359 26.5 Plus
Cpsf73-PA 684 CG7698-PA 15..370 2..366 301 24.4 Plus
IntS9-PA 654 CG5222-PA 1..428 5..362 202 22.5 Plus