BDGP Sequence Production Resources |
Search the DGRC for LD14261
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 142 |
Well: | 61 |
Vector: | pBS SK- |
Associated Gene/Transcript | scaf6-RC |
Protein status: | LD14261.pep: gold |
Preliminary Size: | 650 |
Sequenced Size: | 1423 |
Gene | Date | Evidence |
---|---|---|
CG6615 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6615 | 2003-01-01 | Sim4 clustering to Release 3 |
scaf6 | 2008-04-29 | Release 5.5 accounting |
scaf6 | 2008-08-15 | Release 5.9 accounting |
scaf6 | 2008-12-18 | 5.12 accounting |
1423 bp (1423 high quality bases) assembled on 2003-02-27
GenBank Submission: BT006010
> LD14261.complete AAAAAACAAGAAGAAGCAGTGAAAAGTGCCGCTGAAAAAGTGCAAAAAGT TATGAATTTAGTATTTTACATAGGATAATAGTGCTAATAACAGTCGCAAA ATGGACGTGCAACCGCCACGCGATGCCAGTTTACGAAATATTATCGACAA ACTGGCGGAGTTTGTGGCCAGAAATGGGCCGGAATTCGAGGCGATAACCA AGCAGAAGCAGCAGAACAATCCAAAGTTCGAGTTCCTCTACGGCGGGGAG TTCGCCAACTATTATCAATTCAGGGTGGCAGCGGAACAAGCTCTGCTAAA GCAACAGGCCATTAACCAACAACTGCCACCAGGTGCTCCATCCGGCCACT ACATGCAACATCCGCCGCCAATGCAGCAATCCCAACCACCGGGCCTCTAT CCGCCACCCAATCAGCAGCCACCGCACCCGCCCGAAACCGCACAAGACAA TATGCAACAGCAAACACAGCACTCCTGGCCGCCGAACTCCGGCAACGGTG GGCCGCCAAACAATCAGCAGGCCAATGGCAATCCCATGGCCATGAATCTA ACGTCACAACTGGAAGCCATCAAGATGCAGCAGAAGTCGCTGCGGGAACA GATCCAGCAATCCGAAGCGAATCTCTCCGCACAGCACACGGTAATTTGAA GTTGGAAATAACTGGGATACCTCTATATGCCCACCTTTGCAAGCCTTTTT CCGAAAGATTAGAGCAGCTCGAGTGTATAAAGAAAAGATTTCAATATGAT TTCATGTTGAATGTTGGCCTCCTCTGGCAAAAATTTAAAGAAGCAAATTG GTTTCCTTTTTAAACTAAATACCCACCTAAAAGTTGCTTTTATAGTCTGA ATATAAGAACGTGTTTGCTTCTTCGAATTTTTGACCTCCCTTTTAAACGA CCCAATCGAATGTGAATATACCTCGATTTTAAGCCAGAATGCTTTTAATT ATTTTCTTAAGAGAGAAGATAACTTGTATAACCCTTATATACTTTCGGAC TTAAATGATTTCCAAAGATATTGTCATAGACTCATAGATGGCAGTTTTGT ATTCCCTAGTTTTTGTAATAACAACTCTGGAACAAGAGTTCATCAAATGG TGTTTAATATTAATAATTATGAACTGCTTTTGTGGACTTTTCACTCTATA AGTACTGTGAACTAAATTCTTTCTAATAAGAAGGACATTTCTTATTGCTT GTCGCTATTGAATTTCCCTGTAATGGAAGTGACTTCCCTCTTGAAATTGT TTCTTATGAAACTAATCCACGAATTCCTCAGAATAATCAATCCTGCTCTC GACCCTTTTCCAAATGTTTTTTCAATCGATCTACTCAGTTCTTGTTCTCC AAGTGCGGATAAGATAAAGTTAAAGTGTACTTTCAGCAATATCAAACTAC AAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17030389..17031504 | 1400..294 | 5290 | 98.5 | Minus |
chr3L | 24539361 | chr3L | 17031567..17031738 | 293..122 | 860 | 100 | Minus |
chr3L | 24539361 | chr3L | 17031902..17032023 | 122..1 | 610 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17040932..17042040 | 1402..294 | 5545 | 100 | Minus |
3L | 28110227 | 3L | 17042103..17042274 | 293..122 | 860 | 100 | Minus |
3L | 28110227 | 3L | 17042438..17042559 | 122..1 | 610 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17034032..17035140 | 1402..294 | 5545 | 100 | Minus |
3L | 28103327 | 3L | 17035203..17035374 | 293..122 | 860 | 100 | Minus |
3L | 28103327 | 3L | 17035538..17035659 | 122..1 | 610 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17030389..17031504 | 294..1400 | 98 | <- | Minus |
chr3L | 17031567..17031737 | 123..293 | 100 | <- | Minus |
chr3L | 17031902..17032023 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RA | 1..541 | 101..641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 1..549 | 101..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 1..549 | 101..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RA | 1..541 | 101..641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 1..549 | 101..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RB | 1..641 | 1..641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 1..1400 | 1..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 16..1415 | 1..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RB | 1..641 | 1..641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scaf6-RC | 16..1415 | 1..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17040934..17042040 | 294..1400 | 100 | <- | Minus |
3L | 17042103..17042273 | 123..293 | 100 | <- | Minus |
3L | 17042438..17042559 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17040934..17042040 | 294..1400 | 100 | <- | Minus |
3L | 17042103..17042273 | 123..293 | 100 | <- | Minus |
3L | 17042438..17042559 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17040934..17042040 | 294..1400 | 100 | <- | Minus |
3L | 17042103..17042273 | 123..293 | 100 | <- | Minus |
3L | 17042438..17042559 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17034034..17035140 | 294..1400 | 100 | <- | Minus |
arm_3L | 17035203..17035373 | 123..293 | 100 | <- | Minus |
arm_3L | 17035538..17035659 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17035538..17035659 | 1..122 | 100 | Minus | |
3L | 17034034..17035140 | 294..1400 | 100 | <- | Minus |
3L | 17035203..17035373 | 123..293 | 100 | <- | Minus |
Translation from 100 to 648
> LD14261.hyp MDVQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE FANYYQFRVAAEQALLKQQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLY PPPNQQPPHPPETAQDNMQQQTQHSWPPNSGNGGPPNNQQANGNPMAMNL TSQLEAIKMQQKSLREQIQQSEANLSAQHTVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scaf6-PC | 182 | CG33522-PC | 1..182 | 1..182 | 978 | 100 | Plus |
scaf6-PE | 251 | CG33522-PE | 1..182 | 1..182 | 972 | 98.9 | Plus |
scaf6-PA | 960 | CG33522-PA | 1..182 | 1..182 | 972 | 98.9 | Plus |
CG16941-PA | 784 | CG16941-PA | 29..84 | 3..59 | 150 | 53.4 | Plus |
Translation from 100 to 648
> LD14261.pep MDVQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE FANYYQFRVAAEQALLKQQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLY PPPNQQPPHPPETAQDNMQQQTQHSWPPNSGNGGPPNNQQANGNPMAMNL TSQLEAIKMQQKSLREQIQQSEANLSAQHTVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24403-PA | 979 | GF24403-PA | 1..172 | 1..182 | 604 | 74.6 | Plus |
Dana\GF17916-PA | 792 | GF17916-PA | 35..84 | 11..59 | 155 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15832-PA | 953 | GG15832-PA | 1..180 | 1..182 | 711 | 90.7 | Plus |
Dere\GG16800-PA | 792 | GG16800-PA | 35..84 | 11..59 | 154 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15948-PA | 1039 | GH15948-PA | 1..194 | 1..182 | 508 | 60 | Plus |
Dgri\GH18068-PA | 799 | GH18068-PA | 35..84 | 11..59 | 154 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scaf6-PC | 182 | CG33522-PC | 1..182 | 1..182 | 978 | 100 | Plus |
scaf6-PE | 251 | CG33522-PE | 1..182 | 1..182 | 972 | 98.9 | Plus |
scaf6-PA | 960 | CG33522-PA | 1..182 | 1..182 | 972 | 98.9 | Plus |
Sf3a1-PA | 784 | CG16941-PA | 29..84 | 3..59 | 150 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16600-PA | 987 | GI16600-PA | 1..185 | 1..182 | 542 | 63 | Plus |
Dmoj\GI23747-PA | 788 | GI23747-PA | 35..84 | 11..59 | 155 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16064-PA | 1001 | GL16064-PA | 1..192 | 1..182 | 606 | 75 | Plus |
Dper\GL22993-PA | 289 | GL22993-PA | 35..84 | 11..59 | 148 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28475-PA | 1001 | GA28475-PA | 1..192 | 1..182 | 610 | 75.5 | Plus |
Dpse\GA14228-PA | 788 | GA14228-PA | 35..84 | 11..59 | 154 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24352-PA | 210 | GM24352-PA | 1..49 | 1..49 | 269 | 100 | Plus |
Dsec\GM15394-PA | 784 | GM15394-PA | 35..84 | 11..59 | 154 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12428-PA | 965 | GD12428-PA | 1..182 | 1..182 | 768 | 95.6 | Plus |
Dsim\GD15098-PA | 363 | GD15098-PA | 37..86 | 11..59 | 150 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12853-PA | 992 | GJ12853-PA | 1..179 | 1..182 | 563 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20430-PA | 1022 | GK20430-PA | 1..190 | 1..182 | 497 | 61.6 | Plus |