Clone LD14381 Report

Search the DGRC for LD14381

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:143
Well:81
Vector:pBS SK-
Associated Gene/TranscriptDIP1-RC
Protein status:LD14381.pep: gold
Sequenced Size:2205

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
DIP1-RC 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LD14381.complete Sequence

2205 bp assembled on 2011-01-03

GenBank Submission: BT125869.1

> LD14381.complete
AGCAGTGAAAAATTAAATTACAAAAGCGAAAAAGCGAATTACAAAAGTGA
AAAATTAAATTACAAAAAAAATCAAGATGAAGCGAAATCGTCGTGCATTT
GCTGGAAACAACAAGCCATTTGTCTTTGGAGGCATTTACGCCGCCAATGT
CCAGGAGCAGCAGTCTTCTCCGGTGGCTTTATATCCGACATCGGCCTCCC
CGGTGGCTGTTCAATCGCCACAGGACGCATTTTTGGCTGTTCAGTCGCCA
GGGGCTCCTGCCCCCGTTCAACTGGCCAACTCGTCCGACCAGCAGAATAA
TCCGGATGCGGACGCCATTGCCTCCAAACTGCCCATGCCAGTTATCATCA
AGGAGGAGCCGATCTCTGTCAACGATGAACCGTCCGTCGACAATATAGAG
GACAATACCAGTGCCAGTACCAGTGCCAGCGGCATCGGGGGCAAGATCCC
ATTTAAAAAAATCTTCCAAAAGCGCAAGAAGTCGTCTGAACGCACTCGGG
ACAAGAAGTTGCGACAGAACCGCCAGCTGCGCAAGTCCATGCTCCCCAAG
AACGCTCTGATGGCCCTCAACGAGGTGAAGGGCGTGACCATCAGCGATTT
CACCATCGACAGCAATACCGACGGGGGATTCACGGCCGTTGTCACTGTCA
ACTCGAATCAGTACGAGGGCAAGGGTACCTCGAAAATGACAGCCAAGAAC
GCGGCCTGCGAGAAGGCTTGGCGCGATTTTATTATTGCAAAAATGACCCC
CAAGCCGCCCCGTATTCACCAGGTGGAGATGGGTTCGGAGCCAATGGATA
TCAACGAGGATGAGGCCGATGCACCGGATGATGATCTGCCCATGTTGAAT
CTGGCCTCGTTTGCCATCTACAAGCTGTTCGCGGAGTGGGAACGGGAGGG
CTATGTCGTGCCCGAGATGCACCCTTCGGCCAATGCTGCCCAACAGGCGG
GAGGGGATGCCGGAACTCCAGTTCCCCCCGTGCCGAAGGAGCCAAAGAAG
CCGCCAGTGCGCACCGAGCTACCCTCTGGCTGGGAGACCATGCACCCGGC
GACCATTCTTTGCATTATGCGTCCGGGACTCAACTACGTGGACTACGGGT
CATCTGGCGACAAGACCAACGGCATGCAGCATCTGGGAATCATGGTGGAC
AACCAGGAGTTCCACGCCAACGGCAGATCAAAGAAAATCGCCCGTCGCAA
CGTGGCCGTGAAAGTGTGCAACTCTCTGTTCGGCACCAACTTCACCTACA
GCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACG
ACAACACACATAACGGACACTCTTAACGGACAGCAATCAGAAGATTGCGA
CCCTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAGACACCAACT
CCAACCGCAGACTCCAACTGCAGACGACAACACACCTATGCCTCTCTTAA
CGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCGCAACTTTAA
GCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGCAGACG
ACAACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAGATTGCGACC
CTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAGACACCAACTCC
AACCGCAGACTCCAACTGCCGACGACAACACACCTATGCCTCTCTTAACG
GACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCGCAACTTTAAGC
GACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACGAC
AACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAGATTGCGACCCT
GACGTCAATGGCGCAACTTTAAGCGACACCACTTAAGACACCAACTCCAA
CCGCAGACTCCAACTGCCGACGACAACACACCTATGCCTCTCTTAACGGA
CAGCAATCGGAAGATTGCGACCCTGACGTCAATGGCGCAACTTTAAGCGA
CACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGCCGACGACAA
CACACCTATGCCTCTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGA
CGTCAATGGCGCAACTTTAAGAATTCCTTTTCTGTCAAAGTGAAGAGGCA
TATTAAACAAGAATTTCCCAATTTAGTTTGTATTTAAAAAAAAAAAAAAA
AAAAA

LD14381.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21490292..21491410 2185..1067 5595 100 Minus
chrX 22417052 chrX 21490356..21491101 1997..1250 3480 98 Minus
chrX 22417052 chrX 21490480..21491227 2121..1376 3480 98 Minus
chrX 22417052 chrX 21491471..21492049 1066..488 2895 100 Minus
chrX 22417052 chrX 21490356..21490977 1873..1250 2890 97.9 Minus
chrX 22417052 chrX 21490604..21491227 2121..1500 2890 97.9 Minus
chrX 22417052 chrX 21490356..21490853 1749..1250 2300 97.8 Minus
chrX 22417052 chrX 21490728..21491227 2121..1624 2300 97.8 Minus
chrX 22417052 chrX 21493519..21493867 488..140 1745 100 Minus
chrX 22417052 chrX 21490356..21490729 1625..1250 1650 96.5 Minus
chrX 22417052 chrX 21490852..21491227 2121..1748 1650 96.5 Minus
chrX 22417052 chrX 21490356..21490605 1501..1250 1090 96.4 Minus
chrX 22417052 chrX 21490976..21491227 2121..1872 1090 96.4 Minus
chrX 22417052 chrX 21495131..21495270 140..1 700 100 Minus
chrX 22417052 chrX 21490356..21490481 1377..1250 500 94.5 Minus
chrX 22417052 chrX 21491100..21491227 2121..1996 500 94.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21625134..21626252 2185..1067 5595 100 Minus
X 23542271 X 21625198..21625943 1997..1250 3480 98 Minus
X 23542271 X 21625322..21626069 2121..1376 3480 98 Minus
X 23542271 X 21626313..21626891 1066..488 2895 100 Minus
X 23542271 X 21625198..21625819 1873..1250 2890 97.9 Minus
X 23542271 X 21625446..21626069 2121..1500 2890 97.9 Minus
X 23542271 X 21625198..21625695 1749..1250 2300 97.8 Minus
X 23542271 X 21625570..21626069 2121..1624 2300 97.8 Minus
X 23542271 X 21628361..21628709 488..140 1745 100 Minus
X 23542271 X 21625694..21626069 2121..1748 1650 96.5 Minus
X 23542271 X 21625198..21625571 1625..1250 1650 96.5 Minus
X 23542271 X 21625198..21625447 1501..1250 1090 96.4 Minus
X 23542271 X 21625818..21626069 2121..1872 1090 96.4 Minus
X 23542271 X 21629973..21630112 140..1 700 100 Minus
X 23542271 X 21625198..21625323 1377..1250 500 94.5 Minus
X 23542271 X 21625942..21626069 2121..1996 500 94.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21610226..21611344 2185..1067 5595 100 Minus
X 23527363 X 21611405..21611983 1066..488 2895 100 Minus
X 23527363 X 21613453..21613801 488..140 1745 100 Minus
X 23527363 X 21615065..21615204 140..1 700 100 Minus
X 23527363 X 21603057..21603098 1175..1134 165 92.8 Minus
Blast to na_te.dros performed on 2019-03-17 01:23:37 has no hits.

LD14381.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:24:25 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21490292..21491410 1067..2185 100 <- Minus
chrX 21491471..21492048 489..1066 100 <- Minus
chrX 21493519..21493867 140..488 100 <- Minus
chrX 21495132..21495270 1..139 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:01:04 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 1..1188 77..1264 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:37:35 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 1..1188 77..1264 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:56:47 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 1..1188 77..1264 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:01:04 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 47..2231 1..2185 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:37:35 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 47..2231 1..2185 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:56:47 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RC 37..2221 1..2185 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:25 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625134..21626252 1067..2185 100 <- Minus
X 21626313..21626890 489..1066 100 <- Minus
X 21628361..21628709 140..488 100 <- Minus
X 21629974..21630112 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:25 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625134..21626252 1067..2185 100 <- Minus
X 21626313..21626890 489..1066 100 <- Minus
X 21628361..21628709 140..488 100 <- Minus
X 21629974..21630112 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:25 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625134..21626252 1067..2185 100 <- Minus
X 21626313..21626890 489..1066 100 <- Minus
X 21628361..21628709 140..488 100 <- Minus
X 21629974..21630112 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:37:35 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21496161..21497279 1067..2185 100 <- Minus
arm_X 21497340..21497917 489..1066 100 <- Minus
arm_X 21499388..21499736 140..488 100 <- Minus
arm_X 21501001..21501139 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:40 Download gff for LD14381.complete
Subject Subject Range Query Range Percent Splice Strand
X 21610226..21611344 1067..2185 100 <- Minus
X 21611405..21611982 489..1066 100 <- Minus
X 21613453..21613801 140..488 100 <- Minus
X 21615066..21615204 1..139 100   Minus

LD14381.hyp Sequence

Translation from 76 to 1263

> LD14381.hyp
MKRNRRAFAGNNKPFVFGGIYAANVQEQQSSPVALYPTSASPVAVQSPQD
AFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKLPMPVIIKEEPISVND
EPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKKSSERTRDKKLRQNRQ
LRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGFTAVVTVNSNQYEGKG
TSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEMGSEPMDINEDEADAP
DDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSANAAQQAGGDAGTPVP
PVPKEPKKPPVRTELPSGWETMHPATILCIMRPGLNYVDYGSSGDKTNGM
QHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLFGTNFTYSDTT*

LD14381.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
DIP1-PC 395 CG17686-PC 1..395 1..395 2057 100 Plus
DIP1-PD 410 CG17686-PD 1..410 1..395 2031 96.3 Plus
DIP1-PB 409 CG17686-PB 27..409 13..395 1951 98.2 Plus
DIP1-PI 378 CG17686-PI 3..378 20..395 1944 99.5 Plus
DIP1-PG 378 CG17686-PG 3..378 20..395 1944 99.5 Plus

LD14381.pep Sequence

Translation from 76 to 1263

> LD14381.pep
MKRNRRAFAGNNKPFVFGGIYAANVQEQQSSPVALYPTSASPVAVQSPQD
AFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKLPMPVIIKEEPISVND
EPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKKSSERTRDKKLRQNRQ
LRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGFTAVVTVNSNQYEGKG
TSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEMGSEPMDINEDEADAP
DDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSANAAQQAGGDAGTPVP
PVPKEPKKPPVRTELPSGWETMHPATILCIMRPGLNYVDYGSSGDKTNGM
QHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLFGTNFTYSDTT*

LD14381.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10760-PA 296 GF10760-PA 63..295 131..390 315 32.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17525-PA 395 GG17525-PA 1..395 1..395 1530 76.7 Plus
Dere\GG14132-PA 310 GG14132-PA 24..308 62..389 356 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17808-PA 279 GH17808-PA 6..277 121..391 1036 71.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
DIP1-PC 395 CG17686-PC 1..395 1..395 2057 100 Plus
DIP1-PD 410 CG17686-PD 1..410 1..395 2031 96.3 Plus
DIP1-PB 409 CG17686-PB 27..409 13..395 1951 98.2 Plus
DIP1-PI 378 CG17686-PI 3..378 20..395 1944 99.5 Plus
DIP1-PG 378 CG17686-PG 3..378 20..395 1944 99.5 Plus
DIP1-PF 394 CG17686-PF 19..394 20..395 1944 99.5 Plus
DIP1-PE 378 CG17686-PE 3..378 20..395 1944 99.5 Plus
DIP1-PH 309 CG17686-PH 1..309 87..395 1621 100 Plus
CG12493-PB 293 CG12493-PB 11..290 66..389 373 32.4 Plus
CG12493-PA 296 CG12493-PA 11..293 66..389 362 32.1 Plus
blanks-PA 324 CG10630-PA 55..321 93..389 353 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14602-PA 338 GI14602-PA 7..337 76..393 1107 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13431-PA 392 GL13431-PA 1..391 1..393 1163 60.4 Plus
Dper\GL27226-PA 244 GL27226-PA 1..241 155..390 611 52.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14612-PA 392 GA14612-PA 1..391 1..393 1165 60.7 Plus
Dpse\GA26778-PA 311 GA26778-PA 23..308 129..390 575 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13527-PA 400 GM13527-PA 1..399 1..394 1719 83.6 Plus
Dsec\GM24510-PA 381 GM24510-PA 1..380 1..394 1712 86 Plus
Dsec\GM19637-PA 364 GM19637-PA 3..363 20..394 1686 85.9 Plus
Dsec\GM13531-PA 392 GM13531-PA 1..391 1..394 1685 82.6 Plus
Dsec\GM19640-PA 396 GM19640-PA 1..395 1..394 1673 82.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24670-PA 400 GD24670-PA 1..399 1..394 1760 85.6 Plus
Dsim\GD15489-PA 380 GD15489-PA 1..379 1..394 1460 74.1 Plus
Dsim\GD24430-PA 110 GD24430-PA 7..110 292..395 491 85.6 Plus
Dsim\GD13198-PA 257 GD13198-PA 29..254 139..389 356 35.1 Plus
Dsim\GD13235-PA 304 GD13235-PA 21..301 68..389 343 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19010-PA 375 GJ19010-PA 1..374 1..393 1014 57.2 Plus
Dvir\GJ10989-PA 199 GJ10989-PA 1..199 155..391 419 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25242-PA 412 GK25242-PA 1..407 1..389 1089 57.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15285-PA 392 GE15285-PA 27..391 13..394 1571 79.1 Plus
Dyak\GE20559-PA 404 GE20559-PA 99..402 53..390 386 33.6 Plus