Clone LD14510 Report

Search the DGRC for LD14510

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:145
Well:10
Vector:pBS SK-
Associated Gene/Transcriptbys-RA
Protein status:LD14510.pep: gold
Preliminary Size:1851
Sequenced Size:1541

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1430 2001-01-01 Release 2 assignment
CG1430 2001-10-10 Blastp of sequenced clone
CG1430 2003-01-01 Sim4 clustering to Release 3
bys 2008-04-29 Release 5.5 accounting
bys 2008-08-15 Release 5.9 accounting
bys 2008-12-18 5.12 accounting

Clone Sequence Records

LD14510.complete Sequence

1541 bp (1541 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061176

> LD14510.complete
TAACGCCACTGCTTTGTTGCAGCACGTGTAGTGATTACAATTTTTGTTGC
CCTTATTATTACACTTGATTTTTGACAATATCCGAGCAAAATGGGTAAGC
CGAAGAAGGCCAACGTGGCAACGATTAAAAATGTGAATCTGGAGAAGCAG
ATCACCGAGGGCAGGGTGGCGAAAAACAAGAACAAGGATAAAGTCAAACT
GCGGGCCGAGGAATCGGCGAACATCGATGCCAGAAGTAGTCAAAAGATCC
TGGCCGCGGCCAAGCTGCAGCAGTTGGAGCTGGACGAAGAGAACTTTCCC
AGTCTGGTGACCGTCAAGAAAGTCAACTTCAGTTTGAATGATGGCCATGT
CAAGGAGGATGAAGAGGTCAACGAGACTGACCTCATGGCCGACCTGGACA
TGGACGAAGACGATGTGGCCGCGTTCGAGCGCTTCCAGCAGCCAGCACAG
GAGGGCAAGCGTACGTTGCACCTGTCCAAGATGATCATGCAGAAGATCCA
GGAGAAGGAGGCCGACATACACACTAAGATCTCTGACGAGGGCTCACTAA
AGATCGAGGAAATCGACCCGAAAGTGAAGGAGATGTACGAGGGCGTGCGC
GATGTGTTGAAACGCTATCGCAGTGGCAAGATCCCTAAGGCCTTCAAGAT
CATACCCAAGCTGCGCAATTGGGAGCAGATCTTGTTCATCACTGAGCCCC
ATAATTGGAGCGCTGCCGCCATGTTCCAAGGCACCCGCATCTTCTGCTCG
GTGCTGTCGCAGGCAATGGCCCAGAGGTTCTATAACCTGGTGCTCCTGCC
ACGAGTTCGTGATGATCTCTGCGAATATAAGAAGCTCAATATGCATCTGT
ACAATGCACTGAAGAGGGCTCTCTTCAAGCCGGCTGCCTTCATGAAGGGA
ATCATTCTGCCGCTGCTCGAGGGCGGCGATTGCACATTGCGCGAGGCCAT
CATTTTCGGCAGTGTGGTGGCCCGCAGCTCTATTCCCGTCCTGCACTCCT
CCGCCTGCCTGCTGAAGATCTGTGAGATGGCCTATTCGGGAGCTAACTCC
ATATTCATCCGTTACTTTCTGGACAAGCGGTATGCTCTGCCTTATCGCGT
CGTGGATGCCGCAGTCTTTCATTTTCTAAGATTCGAGAACGACAAGCGTG
AGTTACCAGTGCTATGGCACCAGAGCCTGCTCACCTTTGCCCAGCGATAC
AAGAACGATATATCCTCCGAACAGCGGGATGCACTGCTGCAGCTGCTCAA
AAAGAAGAGCCATTTCAAGATTACACCCGATGTGAGAAGGGAGCTCCAGG
CGGCCAGTTGTCGCGATGTGGAAATGATGGAGACGGATAATGGCCTGGCT
GGGCAGCCAGCCAAGATGTACACAGATGCCGATGTGGAGTACGAGGGCTG
AGGCGGTGTAAATTAAGGATAACTTTAAGATGATATTGTTTTACTATTTA
ATATCGGATAGTCGTTAAATATGTAAATATACCTACATATGCAGTGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD14510.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
bys-RA 1673 bys-RA 84..1583 1..1500 7500 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7794266..7795058 338..1130 3965 100 Plus
chrX 22417052 chrX 7795297..7795542 1251..1496 1230 100 Plus
chrX 22417052 chrX 7793801..7794019 1..219 1095 100 Plus
chrX 22417052 chrX 7795113..7795234 1129..1250 610 100 Plus
chrX 22417052 chrX 7794083..7794201 219..337 595 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7902367..7903159 338..1130 3965 100 Plus
X 23542271 X 7903398..7903647 1251..1500 1250 100 Plus
X 23542271 X 7901902..7902120 1..219 1095 100 Plus
X 23542271 X 7903214..7903335 1129..1250 610 100 Plus
X 23542271 X 7902184..7902302 219..337 595 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7910465..7911257 338..1130 3965 100 Plus
X 23527363 X 7911496..7911745 1251..1500 1250 100 Plus
X 23527363 X 7910000..7910218 1..219 1095 100 Plus
X 23527363 X 7911312..7911433 1129..1250 610 100 Plus
X 23527363 X 7910282..7910400 219..337 595 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:33:03 has no hits.

LD14510.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:34:22 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7793801..7794019 1..219 100 -> Plus
chrX 7794084..7794201 220..337 100 -> Plus
chrX 7794266..7795058 338..1130 100 -> Plus
chrX 7795115..7795234 1131..1250 100 -> Plus
chrX 7795297..7795542 1251..1496 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:50 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1311 91..1401 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:53 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1311 91..1401 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:41 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1311 91..1401 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:41 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1311 91..1401 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:32:39 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1311 91..1401 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:32 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1496 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:53 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1496 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:41 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 23..1518 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:41 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 1..1496 1..1496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:32:39 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
bys-RA 23..1518 1..1496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:22 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
X 7901902..7902120 1..219 100 -> Plus
X 7902185..7902302 220..337 100 -> Plus
X 7902367..7903159 338..1130 100 -> Plus
X 7903216..7903335 1131..1250 100 -> Plus
X 7903398..7903643 1251..1496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:22 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
X 7901902..7902120 1..219 100 -> Plus
X 7902185..7902302 220..337 100 -> Plus
X 7902367..7903159 338..1130 100 -> Plus
X 7903216..7903335 1131..1250 100 -> Plus
X 7903398..7903643 1251..1496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:22 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
X 7901902..7902120 1..219 100 -> Plus
X 7902185..7902302 220..337 100 -> Plus
X 7902367..7903159 338..1130 100 -> Plus
X 7903216..7903335 1131..1250 100 -> Plus
X 7903398..7903643 1251..1496 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:41 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7797431..7797676 1251..1496 100   Plus
arm_X 7795935..7796153 1..219 100 -> Plus
arm_X 7796218..7796335 220..337 100 -> Plus
arm_X 7796400..7797192 338..1130 100 -> Plus
arm_X 7797249..7797368 1131..1250 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:29 Download gff for LD14510.complete
Subject Subject Range Query Range Percent Splice Strand
X 7910000..7910218 1..219 100 -> Plus
X 7910283..7910400 220..337 100 -> Plus
X 7910465..7911257 338..1130 100 -> Plus
X 7911314..7911433 1131..1250 100 -> Plus
X 7911496..7911741 1251..1496 100   Plus

LD14510.pep Sequence

Translation from 90 to 1400

> LD14510.pep
MGKPKKANVATIKNVNLEKQITEGRVAKNKNKDKVKLRAEESANIDARSS
QKILAAAKLQQLELDEENFPSLVTVKKVNFSLNDGHVKEDEEVNETDLMA
DLDMDEDDVAAFERFQQPAQEGKRTLHLSKMIMQKIQEKEADIHTKISDE
GSLKIEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKIIPKLRNWEQILFI
TEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYKKLN
MHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPV
LHSSACLLKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFEN
DKRELPVLWHQSLLTFAQRYKNDISSEQRDALLQLLKKKSHFKITPDVRR
ELQAASCRDVEMMETDNGLAGQPAKMYTDADVEYEG*

LD14510.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21188-PA 437 GF21188-PA 1..437 1..436 2229 95.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19667-PA 439 GG19667-PA 1..436 1..436 2313 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24352-PA 441 GH24352-PA 1..441 1..436 1926 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
bys-PA 436 CG1430-PA 1..436 1..436 2225 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11006-PA 438 GI11006-PA 1..438 1..436 2046 88.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18339-PA 407 GL18339-PA 1..407 1..436 1890 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12889-PA 436 GA12889-PA 1..436 1..436 2022 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11980-PA 413 GM11980-PA 1..413 1..436 2130 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16865-PA 436 GD16865-PA 1..436 1..436 2293 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15606-PA 437 GJ15606-PA 1..437 1..436 1984 89.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10111-PA 440 GK10111-PA 1..440 1..436 2026 88.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15743-PA 436 GE15743-PA 1..436 1..436 2322 99.3 Plus

LD14510.hyp Sequence

Translation from 90 to 1400

> LD14510.hyp
MGKPKKANVATIKNVNLEKQITEGRVAKNKNKDKVKLRAEESANIDARSS
QKILAAAKLQQLELDEENFPSLVTVKKVNFSLNDGHVKEDEEVNETDLMA
DLDMDEDDVAAFERFQQPAQEGKRTLHLSKMIMQKIQEKEADIHTKISDE
GSLKIEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKIIPKLRNWEQILFI
TEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYKKLN
MHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPV
LHSSACLLKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFEN
DKRELPVLWHQSLLTFAQRYKNDISSEQRDALLQLLKKKSHFKITPDVRR
ELQAASCRDVEMMETDNGLAGQPAKMYTDADVEYEG*

LD14510.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
bys-PA 436 CG1430-PA 1..436 1..436 2225 100 Plus