Clone LD14533 Report

Search the DGRC for LD14533

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:145
Well:33
Vector:pBS SK-
Associated Gene/TranscriptCG2211-RA
Protein status:LD14533.pep: gold
Sequenced Size:1906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2211 2002-01-01 Sim4 clustering to Release 2
CG2211 2002-05-18 Blastp of sequenced clone
CG2211 2003-01-01 Sim4 clustering to Release 3
CG2211 2008-04-29 Release 5.5 accounting
CG2211 2008-08-15 Release 5.9 accounting
CG2211 2008-12-18 5.12 accounting

Clone Sequence Records

LD14533.complete Sequence

1906 bp (1906 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118903

> LD14533.complete
CTTTAACACACTTACCTCGCTCTTTCGCGATCCAACGCGTATAACCTTTT
CCTGCGCCGACATTATAGGCGCTCTAATGTTTTGCTAATAAGTGTTGCAC
AACAATTGTTTATGCTGGGTTATTTGTTCGTTGTTCCTGTTGTTGTTGCA
AAGTGAAAGTGTGTGCGAGAAGGACAGCTTTCGGGGTCACGTTGACAGCC
AAAGAAGGAGGAGTGCTGATTAGAAAACCGAGCCCGGATGAACGATAAAA
GATGAATGAAAACAAAATCCCAGCCCGAACGATCTTTCCAAATTTTTAGC
TGCTGGCCGATACTACGACCGAGCAAAGAGCGAAAAGTGAATGACAAGTG
TGACCGCGGGCGAACCGTTAAAATATACGAAGAACGGCTGACAGGGCTGG
CGAGTGCATGGGCACAGTTTGTGACTGAAGCCAGAAAAAATACTAAGCGT
GACTAAAATTAGTTCAGTGTATAAATGTTAAAAATTACTTAAATATTTTT
GACAATATAAGTGAAAGCAATACTTATACCCGCACATCATTTACAGCCCT
ATTAACATTTTAAGTTGTAAATATCTAAACTACCAAAACGAAATATTTGG
TAAATTATGAAGCCCTGACAACTCTGTAGTCGATAGGCAAAAGAGCTCGC
GCCATGAGCCTATCGTTCTCAGCTGTTTGGAAGCAAAACAAAGGGGAAGG
ACTATCAATTGGAAATGTTTCTGTTCATCAGCCGTCCCACGCGGACGCTG
GGCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCTGA
TCAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTCCA
CACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACAAC
CCGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATCAT
GGTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGTGC
GTTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCATT
AGTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCCAA
TCTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCATCA
TTGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCTTT
GCCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCAGA
TTGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGTGT
TTTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGTTC
GTGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAGCT
GTATCCCCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACACGG
ACTTCATATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATTAC
ATTCCCCGCCTGTTGTGGCAAGCTCAGTTAAGTGGCAACAAGACCTGGTT
TCTGGCACCTGCTCCTGAATGTGACCACCAGTGTCAGCCCTTCTCCTTCT
ATGTGGAGCCCGGAGATGCTGTGTTGGTGGACACACGCATCTGGTACCAT
GCCAATTCAATTCCCAAGGGTCAGTTTTCGCTCACCGTTCAGTCCGAGTA
TGGATGAGATGCACCTTGTAGTTCTGAGACTCAGAATTCAAACAGCCATG
TTAGTCCAAACTTTCATATGGTATAAACTCCCTATTAAGATCTCGTTAAA
ACCACTGAAGACTTGAAATACGTGTAGTGCACTCTAAAAATTGTGCTTTT
AAAAATAAAAACCCAAGTAATCCGTAAGCGATCATAAAAAAAAAAAAAAA
AAAAAA

LD14533.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2211-RA 1887 CG2211-RA 1..1887 1..1887 9435 100 Plus
l(3)02640-RA 2603 l(3)02640-RA 165..412 263..16 1240 100 Minus
l(3)02640-RA 2603 l(3)02640-RA 1..96 359..264 480 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1333199..1333967 1491..723 3725 99 Minus
chr3L 24539361 chr3L 1334023..1334480 723..266 2215 98.9 Minus
chr3L 24539361 chr3L 1332749..1333142 1885..1492 1850 98 Minus
chr3L 24539361 chr3L 1334551..1334813 263..1 1300 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1333689..1334457 1491..723 3845 100 Minus
3L 28110227 3L 1334513..1334972 723..264 2300 100 Minus
3L 28110227 3L 1333237..1333632 1887..1492 1980 100 Minus
3L 28110227 3L 1335041..1335303 263..1 1315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1333689..1334457 1491..723 3845 100 Minus
3L 28103327 3L 1334513..1334972 723..264 2300 100 Minus
3L 28103327 3L 1333237..1333632 1887..1492 1980 100 Minus
3L 28103327 3L 1335041..1335303 263..1 1315 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:23:12 has no hits.

LD14533.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:17 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1332749..1333142 1492..1885 97 <- Minus
chr3L 1333199..1333966 724..1491 98 <- Minus
chr3L 1334023..1334482 264..723 98 <- Minus
chr3L 1334551..1334813 1..263 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:48:52 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..993 715..1707 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:40 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..993 715..1707 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:26 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..993 715..1707 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:53 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..993 715..1707 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:43 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..993 715..1707 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:46 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:40 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:26 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 57..1941 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:53 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:43 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
CG2211-RA 57..1941 1..1885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:17 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1333239..1333632 1492..1885 100 <- Minus
3L 1333689..1334456 724..1491 100 <- Minus
3L 1334513..1334972 264..723 100 <- Minus
3L 1335041..1335303 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:17 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1333239..1333632 1492..1885 100 <- Minus
3L 1333689..1334456 724..1491 100 <- Minus
3L 1334513..1334972 264..723 100 <- Minus
3L 1335041..1335303 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:17 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1333239..1333632 1492..1885 100 <- Minus
3L 1333689..1334456 724..1491 100 <- Minus
3L 1334513..1334972 264..723 100 <- Minus
3L 1335041..1335303 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:26 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1335041..1335303 1..263 100   Minus
arm_3L 1333239..1333632 1492..1885 100 <- Minus
arm_3L 1333689..1334456 724..1491 100 <- Minus
arm_3L 1334513..1334972 264..723 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:15 Download gff for LD14533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1333239..1333632 1492..1885 100 <- Minus
3L 1333689..1334456 724..1491 100 <- Minus
3L 1334513..1334972 264..723 100 <- Minus
3L 1335041..1335303 1..263 100   Minus

LD14533.pep Sequence

Translation from 714 to 1706

> LD14533.pep
MFLFISRPTRTLGNRMQAVRERLGPDLADQLDALHRNVMRTGLVSTQELE
EAFRKTRDMDHNPNRLNLLWLLGIVFFIMVATPVFYETISFLLGVRCFLP
NNYLVWEATRPISDCEFCKGVRAPLILANLTMEEFAPHAYSSMPIIVKRA
VAHWPAQKNLSFAFIKELYESVPGAMDSDCQFLHFNSDLKSLKHVFSMSA
ERSNLTQGVPWFVGWSVCQPAVLAELRKLYPRPHFLPFDAEMPHTDFILM
GYEQGAVMHLDYIPRLLWQAQLSGNKTWFLAPAPECDHQCQPFSFYVEPG
DAVLVDTRIWYHANSIPKGQFSLTVQSEYG*

LD14533.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10062-PA 330 GF10062-PA 1..330 1..330 1587 86.4 Plus
Dana\GF18612-PA 243 GF18612-PA 1..242 92..329 396 34.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14606-PA 330 GG14606-PA 1..330 1..330 1745 97.3 Plus
Dere\GG16773-PA 248 GG16773-PA 73..247 158..329 306 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16228-PA 330 GH16228-PA 1..330 1..330 1421 77.3 Plus
Dgri\GH17492-PA 307 GH17492-PA 40..306 67..329 395 33 Plus
Dgri\GH12986-PA 307 GH12986-PA 40..306 67..329 393 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2211-PB 330 CG2211-PB 1..330 1..330 1773 100 Plus
CG2211-PA 330 CG2211-PA 1..330 1..330 1773 100 Plus
CG14331-PC 312 CG14331-PC 54..311 71..329 397 34 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13374-PA 330 GI13374-PA 1..330 1..330 1426 77.6 Plus
Dmoj\GI22822-PA 307 GI22822-PA 65..306 92..329 412 36.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16071-PA 330 GL16071-PA 1..330 1..330 1531 83 Plus
Dper\GL23933-PA 245 GL23933-PA 92..244 179..329 323 40.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28477-PA 330 GA28477-PA 1..330 1..330 1532 83 Plus
Dpse\GA12914-PA 309 GA12914-PA 46..308 70..329 417 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14219-PA 330 GM14219-PA 1..330 1..330 1753 97.6 Plus
Dsec\GM15362-PA 179 GM15362-PA 4..178 158..329 303 35.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13482-PA 330 GD13482-PA 1..330 1..330 1762 98.2 Plus
Dsim\GD20232-PA 263 GD20232-PA 110..262 179..329 304 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13204-PA 330 GJ13204-PA 1..330 1..330 1469 80 Plus
Dvir\GJ22823-PA 307 GJ22823-PA 60..306 85..329 401 35.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25450-PA 328 GK25450-PA 1..328 1..330 1432 79.1 Plus
Dwil\GK11452-PA 280 GK11452-PA 103..252 179..326 324 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20966-PA 330 GE20966-PA 1..330 1..330 1723 96.1 Plus
Dyak\GE25270-PA 248 GE25270-PA 73..247 158..329 296 34.9 Plus

LD14533.hyp Sequence

Translation from 714 to 1706

> LD14533.hyp
MFLFISRPTRTLGNRMQAVRERLGPDLADQLDALHRNVMRTGLVSTQELE
EAFRKTRDMDHNPNRLNLLWLLGIVFFIMVATPVFYETISFLLGVRCFLP
NNYLVWEATRPISDCEFCKGVRAPLILANLTMEEFAPHAYSSMPIIVKRA
VAHWPAQKNLSFAFIKELYESVPGAMDSDCQFLHFNSDLKSLKHVFSMSA
ERSNLTQGVPWFVGWSVCQPAVLAELRKLYPRPHFLPFDAEMPHTDFILM
GYEQGAVMHLDYIPRLLWQAQLSGNKTWFLAPAPECDHQCQPFSFYVEPG
DAVLVDTRIWYHANSIPKGQFSLTVQSEYG*

LD14533.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2211-PB 330 CG2211-PB 1..330 1..330 1773 100 Plus
CG2211-PA 330 CG2211-PA 1..330 1..330 1773 100 Plus
CG14331-PC 312 CG14331-PC 54..311 71..329 397 34 Plus