Clone LD14717 Report

Search the DGRC for LD14717

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:147
Well:17
Vector:pBS SK-
Associated Gene/TranscriptCG6425-RA
Protein status:LD14717.pep: gold
Preliminary Size:2339
Sequenced Size:2111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6425 2001-01-01 Release 2 assignment
CG6425 2001-10-10 Blastp of sequenced clone
CG6425 2003-01-01 Sim4 clustering to Release 3
CG6425 2008-04-29 Release 5.5 accounting
CG6425 2008-08-15 Release 5.9 accounting
CG6425 2008-12-18 5.12 accounting

Clone Sequence Records

LD14717.complete Sequence

2111 bp (2111 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061180

> LD14717.complete
CAACACTGTCGGCTTACTTTAATTTTTAGCGCATTCCGCAGCGCAAAACA
AAACAAATTTGATTAGTTAAATAATTGACTGCAGTTCACTTTATTGTTAA
GTCAAAGTTATGGAGAACGCACTTAAACGGCGATCTTTAACGCTCAGCAC
GCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTACGCACAG
GGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAACTCCTCA
GCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCACACAAACA
CAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTGGACATCA
GCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGAAAGTCCG
GAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGGACAGTGG
CTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGACGCCGGC
AGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGACAATGAG
CAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGGAGCGCTG
TGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAACCAGTAA
TGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCGCACAAGA
TTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTGTAGCTGC
CTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGATCTCTTCC
TGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCATGAACCT
CCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGGCAAAGCG
ACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGCGAGGACT
GGCTAAACGCCCTAGAAGAGGCAGTGCAGCAGGCCACAATGCCGAAGAAG
CCGCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAGGGGATTC
GTGCAGCGGAGTGTCCACCCTGACCAATGTGACGGCCAATTCAAATGCCT
GCACAAGTGCCTCCTCCGCATCTGGTTCAGAGCTAAGGGATACTCCGCGC
ATCAAACGGCACGCCAGTTCGCACGCTCTGTCCCCAGCCACATCGCATGC
GCGCGGCAAACTCTTTGGCAGCCGGAAATGAAACCCGATTAGGTAACCAG
CCCCTGAATACAATCAGCTTCCCTTCAGCGAGTACCAATTGTGATGAGCA
AAGTTAGAGTTTAAGATATTTCGTTTTGTTTCGCTTGACTTGCGTGCCCC
CTTGCCTGAGCATTCTGTATACGAGTACGCTAATTGATTAATGCAGCTCC
AAAGCGTCTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAA
TTTAAAGCAGGACCCTTAATATTCGCATCGAAGGCCTGTGCGTTCGTTCG
GCGCATGCGACTCGCCATATGTTCGGCATTATCGGGCCGCGAACGCGCCG
CCCACCAGTACCACCAGTACAGGTGGCAGGACGCAGACGGACAGGTGGAT
ACGACTGGTCGCCGACAGGCAGTGAATTGACGTCCCCCGGTTGAGCTTTC
ATTCACGGATAGGAAGCTCGTTGAGTGCGACAGCGTTTTAAATTAATTGA
AATGTAGGCGAAGGATTTCTGTTTTAATATTCAGACTATGGTTATATATA
GGTCAGTTGGATTTCTTCGCGTCTTTGAGTTGCTTGAGAAGCAGCTGATA
AACCCAACAAAATTAGTATTTAATTACACGTTACCTAAGTACGCCAATTC
CTCATCATCTTCGATTGTTTCAATGAATATTTCGTTTTCTTTTTTCCACT
ATTGATAAACCTGTTTAATATATTATTAAGCCTAATGTAAATGCTTACAT
TGTGCTGGTTTTTTATATATGTATGAAACATTCAAGACCCAAGCCTTAAT
AATTTAGTGTATACAAAAGTATTTCTTATTTTTCGTTTATATTACATAAG
TTGTATTGAAAAACAAATAAAAACTGCAACTTATTAAAAAAAAAAAAAAA
AAAAAAAAAAA

LD14717.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2143 CG6425-RA 56..2140 1..2085 10425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22539218..22540241 1199..176 5120 100 Minus
chr3R 27901430 chr3R 22538267..22539153 2085..1199 4435 100 Minus
chr3R 27901430 chr3R 22540300..22540475 176..1 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716116..26717139 1199..176 5120 100 Minus
3R 32079331 3R 26715165..26716051 2085..1199 4435 100 Minus
3R 32079331 3R 26717198..26717373 176..1 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26456947..26457970 1199..176 5120 100 Minus
3R 31820162 3R 26455996..26456882 2085..1199 4435 100 Minus
3R 31820162 3R 26458029..26458204 176..1 880 100 Minus
Blast to na_te.dros performed 2019-03-16 21:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 915..1073 2048..1885 115 54.3 Minus

LD14717.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:15 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22538267..22539152 1200..2085 100 <- Minus
chr3R 22539218..22540240 177..1199 100 <- Minus
chr3R 22540300..22540475 1..176 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:02 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 110..1231 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:58 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 110..1231 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:05:07 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 110..1231 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:45 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 110..1231 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:19 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 110..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:38 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 13..2097 1..2085 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:58 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 13..2097 1..2085 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:07 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 17..2101 1..2085 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:45 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 13..2097 1..2085 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:19 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 17..2101 1..2085 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:15 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717198..26717373 1..176 100   Minus
3R 26715165..26716050 1200..2085 100 <- Minus
3R 26716116..26717138 177..1199 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:15 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717198..26717373 1..176 100   Minus
3R 26715165..26716050 1200..2085 100 <- Minus
3R 26716116..26717138 177..1199 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:15 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717198..26717373 1..176 100   Minus
3R 26715165..26716050 1200..2085 100 <- Minus
3R 26716116..26717138 177..1199 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:07 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22540887..22541772 1200..2085 100 <- Minus
arm_3R 22541838..22542860 177..1199 100 <- Minus
arm_3R 22542920..22543095 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:35 Download gff for LD14717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26455996..26456881 1200..2085 100 <- Minus
3R 26456947..26457969 177..1199 100 <- Minus
3R 26458029..26458204 1..176 100   Minus

LD14717.pep Sequence

Translation from 109 to 1230

> LD14717.pep
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRK*

LD14717.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18569-PA 379 GF18569-PA 1..379 1..373 1333 71.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12173-PA 375 GG12173-PA 1..375 1..373 1764 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18871-PA 369 GH18871-PA 1..368 1..373 847 52.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 373 CG6425-PA 1..373 1..373 1914 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24729-PA 350 GI24729-PA 1..350 1..373 845 52.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24433-PA 370 GL24433-PA 1..370 1..373 1074 64.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26609-PA 370 GA26609-PA 1..370 1..373 1099 63.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10170-PA 369 GM10170-PA 1..369 1..373 1842 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18122-PA 372 GD18122-PA 1..372 1..373 1844 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14555-PA 367 GJ14555-PA 1..366 1..372 809 50.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13954-PA 342 GK13954-PA 1..342 1..373 891 54.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10617-PA 373 GE10617-PA 1..373 1..373 1762 94.4 Plus

LD14717.hyp Sequence

Translation from 109 to 1230

> LD14717.hyp
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRK*

LD14717.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 373 CG6425-PA 1..373 1..373 1914 100 Plus