Clone LD14743 Report

Search the DGRC for LD14743

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:147
Well:43
Vector:pBS SK-
Associated Gene/Transcriptsqh-RA
Protein status:LD14743.pep: gold
Preliminary Size:1300
Sequenced Size:1137

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3595 2001-01-01 Release 2 assignment
CG3595 2002-06-13 Blastp of sequenced clone
CG3595 2003-01-01 Sim4 clustering to Release 3
sqh 2008-04-29 Release 5.5 accounting
sqh 2008-08-15 Release 5.9 accounting
sqh 2008-12-18 5.12 accounting

Clone Sequence Records

LD14743.complete Sequence

1137 bp (1137 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122159

> LD14743.complete
CTTGGCCTTCTCGTCGAACCGAAATTATAAAAGACAAAAGTGCAGCTGGT
CGAAAGTTGCATTAACGAAACTTCGATAGTATTAAACACTCGGCATTCGG
CAGCTATCCACGCCGCACACACATCACTCCAGCGCGAAGCACTAGTGCCA
CCAGCTCCATAGGCCGGCTCCATTTAGCTCCATTAACCGCATCAGAACCA
CCAATCCAACAGCAACCATGTCATCCCGTAAGACCGCCGGACGTCGCGCC
ACCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTT
CGATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACC
AGAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCC
TCGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGA
GGCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGC
GGCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGC
TTCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCT
GCTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGT
ATCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACG
CGCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGTAAGATCGCCA
GCAGTCGATTCACTAGCCAGCTGCCTCTCCAATCAGCCTGTCCAAACTAT
CCATCATGAGTTTCGTTTTGATAATTTAATATATACAAGTATAAATATTT
TTTTTTTTTGGTTTCGCGCCTTCTGTTCTTTGATTCCTGATAATCCTGTA
CTTATCCGTGCATTTGAATTAAACAAAAAGTAGCCAACACCAGCGATTGT
TATGTACGACAGTGTAGTGTGTGAGATGTTGGTGCCAGATAACACGATTT
CCCGAAAAACTCCTTTCATAAGTATTAACTCATTGAATATACATATATAT
TACCTATATACAAATACATACTTATACAAGAATGTGGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD14743.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RA 1408 sqh-RA 64..1157 1..1094 5455 99.9 Plus
sqh.a 1188 sqh.a 64..1161 1..1094 5390 99.5 Plus
sqh.b 1274 sqh.b 258..1247 105..1094 4935 99.8 Plus
sqh.b 1274 sqh.b 64..168 1..105 525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6115763..6116296 639..106 2625 99.4 Minus
chrX 22417052 chrX 6115242..6115691 1088..638 2175 99.3 Minus
chrX 22417052 chrX 6117187..6117291 105..1 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:01:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224116 639..106 2670 100 Minus
X 23542271 X 6223055..6223511 1094..638 2270 99.8 Minus
X 23542271 X 6225007..6225111 105..1 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6231681..6232214 639..106 2670 100 Minus
X 23527363 X 6231153..6231609 1094..638 2270 99.7 Minus
X 23527363 X 6233105..6233209 105..1 525 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:04:40 has no hits.

LD14743.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:05:47 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6115242..6115691 638..1088 99 <- Minus
chrX 6115765..6116296 106..637 99 <- Minus
chrX 6117187..6117291 1..105 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:05 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 1..525 218..742 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:40 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 1..525 218..742 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:24:30 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 1..525 218..742 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:29 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 1..525 218..742 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:03 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 1..525 218..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:54 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 53..1140 1..1088 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:39 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 53..1140 1..1088 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:30 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 30..1117 1..1088 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:29 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 53..1140 1..1088 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:03 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 30..1117 1..1088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:47 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
X 6223061..6223511 638..1088 100 <- Minus
X 6223585..6224116 106..637 100 <- Minus
X 6225007..6225111 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:47 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
X 6223061..6223511 638..1088 100 <- Minus
X 6223585..6224116 106..637 100 <- Minus
X 6225007..6225111 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:47 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
X 6223061..6223511 638..1088 100 <- Minus
X 6223585..6224116 106..637 100 <- Minus
X 6225007..6225111 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:30 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117094..6117544 638..1088 100 <- Minus
arm_X 6117618..6118149 106..637 100 <- Minus
arm_X 6119040..6119144 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:10 Download gff for LD14743.complete
Subject Subject Range Query Range Percent Splice Strand
X 6231159..6231609 638..1088 100 <- Minus
X 6231683..6232214 106..637 100 <- Minus
X 6233105..6233209 1..105 100   Minus

LD14743.pep Sequence

Translation from 217 to 741

> LD14743.pep
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQ*

LD14743.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20304-PA 174 GF20304-PA 1..174 1..174 916 100 Plus
Dana\GF12835-PA 149 GF12835-PA 7..146 30..164 263 40.7 Plus
Dana\GF16196-PA 201 GF16196-PA 48..174 2..150 242 38.8 Plus
Dana\GF17950-PA 230 GF17950-PA 78..221 28..164 227 34.7 Plus
Dana\GF16772-PA 148 GF16772-PA 6..145 30..164 209 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17688-PA 174 GG17688-PA 1..174 1..174 916 100 Plus
Dere\GG20265-PA 149 GG20265-PA 7..146 30..164 263 40.7 Plus
Dere\GG11956-PA 201 GG11956-PA 48..174 2..150 236 37.5 Plus
Dere\GG18839-PA 230 GG18839-PA 68..230 19..173 228 34.4 Plus
Dere\GG11425-PA 148 GG11425-PA 6..147 30..166 205 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24837-PA 174 GH24837-PA 1..174 1..174 906 98.9 Plus
Dgri\GH18385-PA 200 GH18385-PA 47..173 2..150 245 38.8 Plus
Dgri\GH20591-PA 228 GH20591-PA 77..220 28..164 217 32.6 Plus
Dgri\GH23405-PA 151 GH23405-PA 9..150 30..166 214 34.5 Plus
Dgri\GH24922-PA 158 GH24922-PA 13..158 26..167 178 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-PE 174 CG3595-PE 1..174 1..174 909 100 Plus
sqh-PD 174 CG3595-PD 1..174 1..174 909 100 Plus
sqh-PC 174 CG3595-PC 1..174 1..174 909 100 Plus
sqh-PB 174 CG3595-PB 1..174 1..174 909 100 Plus
sqh-PA 174 CG3595-PA 1..174 1..174 909 100 Plus
Mlc2-PA 222 CG2184-PA 48..195 2..150 303 44.1 Plus
Cam-PD 149 CG8472-PD 7..146 30..164 276 40.7 Plus
Cam-PC 149 CG8472-PC 7..146 30..164 276 40.7 Plus
Cam-PE 149 CG8472-PE 7..146 30..164 276 40.7 Plus
Cam-PB 149 CG8472-PB 7..146 30..164 276 40.7 Plus
Cam-PA 149 CG8472-PA 7..146 30..164 276 40.7 Plus
CG33098-PF 230 CG33098-PF 62..230 13..173 235 33.7 Plus
CG33098-PE 230 CG33098-PE 62..230 13..173 235 33.7 Plus
CG33098-PB 230 CG33098-PB 62..230 13..173 235 33.7 Plus
CG33098-PD 164 CG33098-PD 2..164 19..173 234 34.4 Plus
Acam-PB 148 CG17769-PB 6..141 30..160 227 35.3 Plus
Acam-PA 148 CG17769-PA 6..141 30..160 227 35.3 Plus
Mlc-c-PA 147 CG3201-PA 2..147 26..167 196 30.1 Plus
CG33098-PC 199 CG33098-PC 62..172 13..122 184 36 Plus
Mlc-c-PB 153 CG3201-PB 15..153 33..167 181 29.5 Plus
CG17493-PD 182 CG17493-PD 37..177 30..165 176 30.5 Plus
CG17493-PC 182 CG17493-PC 37..177 30..165 176 30.5 Plus
CG17493-PB 182 CG17493-PB 37..177 30..165 176 30.5 Plus
CG11638-PA 387 CG11638-PA 208..355 30..164 174 29.1 Plus
CG30378-PA 148 CG30378-PA 7..147 30..165 171 27 Plus
CG31960-PA 148 CG31960-PA 13..145 37..164 165 24.8 Plus
CG13898-PA 151 CG13898-PA 18..145 38..160 165 26.6 Plus
azot-PA 148 CG11165-PA 14..145 38..164 164 25 Plus
CG17770-PA 164 CG17770-PA 22..161 30..164 162 27.1 Plus
CG31802-PA 186 CG31802-PA 10..181 1..165 162 27.3 Plus
CG5024-PB 165 CG5024-PB 25..162 32..164 157 25.4 Plus
CG5024-PA 165 CG5024-PA 25..162 32..164 157 25.4 Plus
Eip63F-1-PA 193 CG15855-PA 4..192 1..164 157 27.4 Plus
Eip63F-1-PC 181 CG15855-PC 9..180 18..164 156 28.3 Plus
Eip63F-1-PD 166 CG15855-PD 8..165 31..164 149 27.7 Plus
TpnC41C-PB 154 CG2981-PB 9..152 32..167 147 29.2 Plus
TpnC41C-PA 154 CG2981-PA 9..152 32..167 147 29.2 Plus
TpnC47D-PB 155 CG9073-PB 12..152 32..164 142 26.2 Plus
TpnC47D-PA 155 CG9073-PA 12..152 32..164 142 26.2 Plus
CG17272-PA 149 CG17272-PA 5..140 28..163 139 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16168-PA 174 GI16168-PA 1..174 1..174 908 98.9 Plus
Dmoj\GI20594-PA 149 GI20594-PA 7..146 30..164 263 40.7 Plus
Dmoj\GI23377-PA 212 GI23377-PA 59..185 2..150 236 38.2 Plus
Dmoj\GI23199-PA 520 GI23199-PA 79..222 28..164 219 33.3 Plus
Dmoj\GI10339-PA 149 GI10339-PA 7..148 30..166 209 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21357-PA 127 GL21357-PA 6..127 53..174 634 97.5 Plus
Dper\GL10814-PA 149 GL10814-PA 7..146 30..164 263 40.7 Plus
Dper\GL14063-PA 200 GL14063-PA 47..173 2..150 244 38.8 Plus
Dper\GL21535-PA 148 GL21535-PA 2..147 26..166 221 34.9 Plus
Dper\GL27306-PA 230 GL27306-PA 78..221 28..164 210 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17546-PA 174 GA17546-PA 1..174 1..174 916 100 Plus
Dpse\GA15288-PB 222 GA15288-PB 48..195 2..150 314 44.1 Plus
Dpse\GA24499-PA 149 GA24499-PA 7..146 30..164 263 40.7 Plus
Dpse\GA14657-PA 148 GA14657-PA 6..147 30..166 220 35.2 Plus
Dpse\GA17278-PA 230 GA17278-PA 78..221 28..164 210 31.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12587-PA 174 GM12587-PA 1..174 1..174 916 100 Plus
Dsec\GM21351-PA 149 GM21351-PA 7..146 30..164 263 40.7 Plus
Dsec\GM12174-PA 201 GM12174-PA 48..174 2..150 238 38.2 Plus
Dsec\GM24024-PA 230 GM24024-PA 68..230 19..173 227 34.4 Plus
Dsec\GM11056-PA 230 GM11056-PA 68..230 19..173 227 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\sqh-PA 174 GD16204-PA 1..174 1..174 916 100 Plus
Dsim\GD10849-PA 149 GD10849-PA 7..146 30..164 263 40.7 Plus
Dsim\GD17257-PA 201 GD17257-PA 48..174 2..150 238 38.2 Plus
Dsim\GD21235-PA 148 GD21235-PA 6..147 30..166 213 33.8 Plus
Dsim\GD16253-PA 147 GD16253-PA 2..147 26..167 183 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19134-PA 174 GJ19134-PA 1..174 1..174 916 100 Plus
Dvir\GJ16661-PA 174 GJ16661-PA 1..174 1..174 916 100 Plus
Dvir\GJ10371-PA 200 GJ10371-PA 47..173 2..150 236 38.2 Plus
Dvir\GJ22859-PA 230 GJ22859-PA 79..222 28..164 211 33.3 Plus
Dvir\GJ20779-PA 113 GJ20779-PA 1..110 60..164 197 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17694-PA 174 GK17694-PA 1..174 1..174 912 99.4 Plus
Dwil\GK13145-PA 222 GK13145-PA 48..195 2..150 309 43.4 Plus
Dwil\GK22183-PA 149 GK22183-PA 7..146 30..164 263 40.7 Plus
Dwil\GK18988-PA 148 GK18988-PA 6..147 30..166 223 34.5 Plus
Dwil\GK11881-PA 230 GK11881-PA 78..230 28..173 218 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\sqh-PA 174 GE16476-PA 1..174 1..174 916 100 Plus
Dyak\Cam-PA 149 GE12425-PA 7..146 30..164 263 40.7 Plus
Dyak\Mlc2-PA 201 GE23405-PA 48..174 2..150 236 37.5 Plus
Dyak\GE26184-PA 230 GE26184-PA 78..230 28..173 224 34 Plus
Dyak\GE23620-PA 148 GE23620-PA 6..147 30..166 203 32.4 Plus

LD14743.hyp Sequence

Translation from 217 to 741

> LD14743.hyp
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQ*

LD14743.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-PE 174 CG3595-PE 1..174 1..174 909 100 Plus
sqh-PD 174 CG3595-PD 1..174 1..174 909 100 Plus
sqh-PC 174 CG3595-PC 1..174 1..174 909 100 Plus
sqh-PB 174 CG3595-PB 1..174 1..174 909 100 Plus
sqh-PA 174 CG3595-PA 1..174 1..174 909 100 Plus