Clone LD14895 Report

Search the DGRC for LD14895

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:148
Well:95
Vector:pBS SK-
Associated Gene/TranscriptBrms1-RA
Protein status:LD14895.pep: gold
Preliminary Size:1440
Sequenced Size:1325

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4400 2002-01-01 Sim4 clustering to Release 2
CG4400 2002-05-10 Blastp of sequenced clone
CG4400 2003-01-01 Sim4 clustering to Release 3
CG4400 2008-04-29 Release 5.5 accounting
CG4400 2008-08-15 Release 5.9 accounting
CG4400 2008-12-18 5.12 accounting

Clone Sequence Records

LD14895.complete Sequence

1325 bp (1325 high quality bases) assembled on 2002-05-10

GenBank Submission: AY102677

> LD14895.complete
CACAGTTTAGTGTTTTTCCACAGAGTTTTCCACAGTTTCCACACTCCCCG
ATTGTCGAAAGCAAACAAAAAAAGATATCGCGCTTATACCGGCGGCCACC
TGCAGTCCATTGCCGAATCGGAATACGCCGAGAACAAGGAGAACCGCAAA
ATCCACTCTGAAATGCCCGTGAAGAATGGCGAATCCGATGGCGAAGGCGA
CGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACACGACA
CCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTCCGAG
TTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGGATTT
GCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTACGTCG
AGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGGGCGT
TCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATCGCAC
CAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAATATCG
AGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGAGAGC
GAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGCGCAT
CCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCCGACT
GGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAAGAAG
GCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGGAGGA
TATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCCTCCT
CGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAGCGTT
AGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGATAGCGTTGGGG
CGTGGCAGCTGCCGCCTACGCCCACATGACGCGTACCTGACGGCCGCGCC
CGAGGAAGCAGCAGCCGTAGACGTTTATGTATCAGTAGTAGCCGTAGCAG
AGCCCCCGAACCAGACTTCAAATGCGTTCATCAAAATGGCTAAGCTCCGC
CACCCATCCTCACCTCCTTTTCCCGTAGATTTTAGTACGTACGTAGTTTG
TACGAGTCCCACTCTCAGAATATTGTGTGTGTGTGTGTGTGTGTGTGTCT
CTCCCCTCCCCCATACAGACGATGTATGTAATTTATGCTAAAAGATAAGT
GCAAATAAAAGCGAACTGCAGCCAAGTGGGCATGCGTTCAACATAAATTT
AAAAAAAAAAAAAAAAAAAAAAAAA

LD14895.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4400-RA 1391 CG4400-RA 80..1381 1..1302 6510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12798909..12799613 1300..596 3525 100 Minus
chrX 22417052 chrX 12800171..12800522 352..1 1760 100 Minus
chrX 22417052 chrX 12799859..12800103 597..353 1225 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12907984..12908690 1302..596 3535 100 Minus
X 23542271 X 12909248..12909599 352..1 1760 100 Minus
X 23542271 X 12908936..12909180 597..353 1225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12916082..12916788 1302..596 3535 100 Minus
X 23527363 X 12917346..12917697 352..1 1760 100 Minus
X 23527363 X 12917034..12917278 597..353 1225 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:57:19 has no hits.

LD14895.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:58:16 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12798909..12799611 598..1300 96 <- Minus
chrX 12799859..12800103 353..597 100 <- Minus
chrX 12800171..12800522 1..352 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:17 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 163..942 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:38 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 163..942 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:15 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 163..942 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:13 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 163..942 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:52:29 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 1..780 163..942 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:49 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..1299 2..1300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:38 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..1299 2..1300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:15 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 24..1323 1..1300 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:14 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..1299 2..1300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:52:29 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 24..1323 1..1300 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:16 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907986..12908688 598..1300 100 <- Minus
X 12908936..12909180 353..597 100 <- Minus
X 12909248..12909599 1..352 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:16 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907986..12908688 598..1300 100 <- Minus
X 12908936..12909180 353..597 100 <- Minus
X 12909248..12909599 1..352 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:16 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907986..12908688 598..1300 100 <- Minus
X 12908936..12909180 353..597 100 <- Minus
X 12909248..12909599 1..352 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:15 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802019..12802721 598..1300 100 <- Minus
arm_X 12802969..12803213 353..597 100 <- Minus
arm_X 12803281..12803632 1..352 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:39 Download gff for LD14895.complete
Subject Subject Range Query Range Percent Splice Strand
X 12916084..12916786 598..1300 100 <- Minus
X 12917034..12917278 353..597 100 <- Minus
X 12917346..12917697 1..352 100   Minus

LD14895.hyp Sequence

Translation from 0 to 941

> LD14895.hyp
HSLVFFHRVFHSFHTPRLSKANKKRYRAYTGGHLQSIAESEYAENKENRK
IHSEMPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSE
LDASEIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGR
SEEFVQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFES
EKHMALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKK
AVTVTGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSV
SLSGLPAMAGASG*

LD14895.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-PA 259 CG4400-PA 1..259 55..313 1323 100 Plus
CG14220-PB 327 CG14220-PB 12..254 83..313 176 24.3 Plus
CG14220-PA 327 CG14220-PA 12..254 83..313 176 24.3 Plus

LD14895.pep Sequence

Translation from 162 to 941

> LD14895.pep
MPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSELDAS
EIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGRSEEF
VQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFESEKHM
ALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKKAVTV
TGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSVSLSG
LPAMAGASG*

LD14895.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20882-PA 261 GF20882-PA 1..261 1..259 1153 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19530-PA 258 GG19530-PA 1..258 1..259 1273 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17617-PA 279 GH17617-PA 1..232 1..229 1044 87.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-PA 259 CG4400-PA 1..259 1..259 1323 100 Plus
CG14220-PB 327 CG14220-PB 12..254 29..259 176 24.3 Plus
CG14220-PA 327 CG14220-PA 12..254 29..259 176 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16273-PA 260 GI16273-PA 1..260 1..259 1083 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22958-PA 272 GL22958-PA 1..272 1..259 1040 79.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18159-PA 272 GA18159-PA 1..272 1..259 1040 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11524-PA 52 GM11524-PA 1..52 208..259 254 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24527-PA 259 GD24527-PA 1..259 1..259 1353 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16917-PA 269 GJ16917-PA 1..269 1..259 1083 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25281-PA 265 GK25281-PA 1..226 1..227 1061 89.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16189-PA 258 GE16189-PA 1..258 1..259 1300 95.8 Plus