Clone LD15005 Report

Search the DGRC for LD15005

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:150
Well:5
Vector:pBS SK-
Associated Gene/TranscriptCG3434-RA
Protein status:LD15005.pep: gold
Preliminary Size:1491
Sequenced Size:1368

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3434 2001-01-01 Release 2 assignment
CG3434 2001-10-10 Blastp of sequenced clone
CG3434 2003-01-01 Sim4 clustering to Release 3
CG3434 2008-04-29 Release 5.5 accounting
CG3434 2008-08-15 Release 5.9 accounting
CG3434 2008-12-18 5.12 accounting

Clone Sequence Records

LD15005.complete Sequence

1368 bp (1368 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061186

> LD15005.complete
TTCAAACGTGTGGTTGGTTGTTATTTATTCCAATAATAAATACTCATTCG
AGCCGGAATGAAATTTGCAATCGAGAGTATTAGCAAGAATTCTGGTCGAC
TAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAGACTCCCCTT
CTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAGTGCGGATGT
TTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAATTCACACTGT
CCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAACAGTGGTGGG
GGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCTAAATATTCT
CCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTAACGACAGGG
ATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTCTCTTCGGAG
CGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTATGAGGGACT
CTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGGTTCAGAAAT
CGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAGCACCGGGGC
AAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATACAACACCTT
TGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAGCGGGAAGCT
ATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTATCAGCGACC
ACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTGCGTCAAGCA
GCTGGAGGAGGACAAGCCTAAGATATTGCCGGGTGCATACACGCCCCTAA
CCGTTCTGGAACTAATCCAACAAGGAATCGATGTGTTTGACACTTCCTAC
GCATATTGTGCTTCTCTAAACTTCAAGGCTTTGTCATTTAGTTTTGTGCA
GGATGCAGTGGAGCATGTGCCTTTCTTGGACATAACCGACGAAGCTATCA
AGGAGGATTTTACTCCGCCGCTGAGCAACTGCAATTGCTTGACTTGCCAG
AAACACACGCGTGCCTACCTTCACCACCTGTACAAGACCAACGAACTATT
AGGTCCCATCTTACTGATGGTTCACAACCTTTATCACTACATGGCTTTCT
TTGAAAAAATTCGTGAGAGTGTGGCTAAAGATACGCTTCCACAGCTGACG
GAGCTCGTAAGAAATCAGAATGGGAAAACACAGGTGGATTATTCCATCGC
AGCCAATACCAAAGTAATTAGCAAGGCCACTATGGGGAAAGGATTCGCTG
CGGCAGCAGTATGACATGAGCAACCAATTAAACGCTAAACTAAGTCTAAA
AAAAAAAAAAAAAAAAAA

LD15005.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-RA 1521 CG3434-RA 120..1467 1..1348 6740 100 Plus
CG3552-RA 1484 CG3552-RA 1416..1484 1348..1280 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9451532..9452652 1121..1 5605 100 Minus
chr3L 24539361 chr3L 9451247..9451472 1347..1122 1130 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9459654..9460774 1121..1 5605 100 Minus
3L 28110227 3L 9459368..9459594 1348..1122 1135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9452754..9453874 1121..1 5605 100 Minus
3L 28103327 3L 9452468..9452694 1348..1122 1135 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:04:42 has no hits.

LD15005.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:05:48 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9451247..9451472 1122..1347 100 <- Minus
chr3L 9451532..9452652 1..1121 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:25 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1257 58..1314 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:41 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1257 58..1314 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:24:38 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1257 58..1314 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:28 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1257 58..1314 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:10 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1257 58..1314 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:17 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:41 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:38 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 26..1372 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:29 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:10 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 26..1372 1..1347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:48 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9459369..9459594 1122..1347 100 <- Minus
3L 9459654..9460774 1..1121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:48 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9459369..9459594 1122..1347 100 <- Minus
3L 9459654..9460774 1..1121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:48 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9459369..9459594 1122..1347 100 <- Minus
3L 9459654..9460774 1..1121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:38 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9452469..9452694 1122..1347 100 <- Minus
arm_3L 9452754..9453874 1..1121 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:16 Download gff for LD15005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9452469..9452694 1122..1347 100 <- Minus
3L 9452754..9453874 1..1121 100   Minus

LD15005.pep Sequence

Translation from 57 to 1313

> LD15005.pep
MKFAIESISKNSGRLGQLRIRDGGPEFKTPLLLQTTKGGSIPWLSADVFE
THVSRKPQVLQFTLSTMEQMTEALTHWNSGGGRGLSDYVGLPGHLNILLL
RDPCETTPSGGNDRDILPLFTRRGKESLSSERYMEIVASFKPDMYEGLCD
ADTNLESAKKRVQKSVDRTEKFMQYIYEHRGKVNSTLLAPIVGGYNTFAR
TQSIKHAREQPAGSYGGYIFEGFHANGLSATTLDTSKLLPIVEHCVKQLE
EDKPKILPGAYTPLTVLELIQQGIDVFDTSYAYCASLNFKALSFSFVQDA
VEHVPFLDITDEAIKEDFTPPLSNCNCLTCQKHTRAYLHHLYKTNELLGP
ILLMVHNLYHYMAFFEKIRESVAKDTLPQLTELVRNQNGKTQVDYSIAAN
TKVISKATMGKGFAAAAV*

LD15005.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24662-PA 417 GF24662-PA 1..417 1..418 1792 78 Plus
Dana\GF15174-PA 420 GF15174-PA 132..366 128..381 208 25.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14034-PA 418 GG14034-PA 1..418 1..418 2069 92.3 Plus
Dere\GG24778-PA 428 GG24778-PA 132..366 128..381 210 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16210-PA 419 GH16210-PA 1..419 1..418 1534 67.5 Plus
Dgri\GH11403-PA 412 GH11403-PA 131..365 128..381 202 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-PA 418 CG3434-PA 1..418 1..418 2180 100 Plus
Tgt-PA 427 CG4947-PA 132..364 128..379 202 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13356-PA 416 GI13356-PA 1..415 1..417 1533 67.2 Plus
Dmoj\GI14537-PA 406 GI14537-PA 132..367 128..382 212 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17966-PA 417 GL17966-PA 1..417 1..418 1845 79.7 Plus
Dper\GL15624-PA 429 GL15624-PA 132..391 128..405 206 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17450-PA 417 GA17450-PA 1..417 1..418 1857 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24868-PA 418 GM24868-PA 1..418 1..418 2200 97.1 Plus
Dsec\GM16805-PA 427 GM16805-PA 132..366 128..381 208 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13186-PA 417 GJ13186-PA 1..417 1..418 1573 69 Plus
Dvir\GJ16961-PA 406 GJ16961-PA 132..366 128..381 202 25.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20504-PA 428 GK20504-PA 1..422 1..413 1593 69.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21237-PA 418 GE21237-PA 1..418 1..418 2147 93.1 Plus
Dyak\GE17440-PA 427 GE17440-PA 132..366 128..381 208 25.9 Plus

LD15005.hyp Sequence

Translation from 57 to 1313

> LD15005.hyp
MKFAIESISKNSGRLGQLRIRDGGPEFKTPLLLQTTKGGSIPWLSADVFE
THVSRKPQVLQFTLSTMEQMTEALTHWNSGGGRGLSDYVGLPGHLNILLL
RDPCETTPSGGNDRDILPLFTRRGKESLSSERYMEIVASFKPDMYEGLCD
ADTNLESAKKRVQKSVDRTEKFMQYIYEHRGKVNSTLLAPIVGGYNTFAR
TQSIKHAREQPAGSYGGYIFEGFHANGLSATTLDTSKLLPIVEHCVKQLE
EDKPKILPGAYTPLTVLELIQQGIDVFDTSYAYCASLNFKALSFSFVQDA
VEHVPFLDITDEAIKEDFTPPLSNCNCLTCQKHTRAYLHHLYKTNELLGP
ILLMVHNLYHYMAFFEKIRESVAKDTLPQLTELVRNQNGKTQVDYSIAAN
TKVISKATMGKGFAAAAV*

LD15005.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-PA 418 CG3434-PA 1..418 1..418 2180 100 Plus
Tgt-PA 427 CG4947-PA 132..364 128..379 202 26.5 Plus