Clone LD15072 Report

Search the DGRC for LD15072

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:150
Well:72
Vector:pBS SK-
Associated Gene/Transcriptcbc-RA
Protein status:LD15072.pep: gold
Preliminary Size:1795
Sequenced Size:1679

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5970 2001-01-01 Release 2 assignment
CG5970 2001-10-10 Blastp of sequenced clone
CG5970 2003-01-01 Sim4 clustering to Release 3
CG5970 2008-04-29 Release 5.5 accounting
CG5970 2008-08-15 Release 5.9 accounting
CG5970 2008-12-18 5.12 accounting

Clone Sequence Records

LD15072.complete Sequence

1679 bp (1679 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061187

> LD15072.complete
CAATTCCCATCGTTAGTGCACAGCTGATGTGAAATTGTTTACCTCCTAAA
TTTTTGGATAATTACCCTATTTCGCCATTAAAACTCATTAGCAGAGCACT
GAAGATACAGCCATGTCGGAGGACCAAGGCAAAGACTACACACTGGAGTC
CGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTGCTGG
TGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGTGAAG
AAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCACGTA
CCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTACATCT
CCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACTGGAG
CAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGGCCAT
GGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATCCTGC
TTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCTGGAT
GTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTCTCAT
CGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCGCTGG
TCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTACAAT
GCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATAGCAA
CAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGGGTAA
AGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGGAGCC
TGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGCTTCG
AGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGCGGCG
TCGTCGAGCGCAGCAAGGAACTGCGACACGAGGCGAGGGATCAGCGCATC
AAGGAGTACTTCTACGGCAATACAAGGGCGCCCTTCTATCCGTTCAGCTT
CGAGGTGAAGTTCCAGGACCTGCGACTCTACAAGATCGGCGCACCGCCGC
TGCCCGACTCCTGCATGCCAATTGGAATGAAGGCGGAGGACAACAAGACC
AAGGTGGTGGCGGTTACACCCACGCCCGCCCTAATCCATCATGTGCTGGC
CCTCAGCTTTGCCGAGTCCGTGGAGGACGATGTGATTGGCACCAATGTGG
CCGGCTTTTGTTGCGTAACCGAAGTGGATATGGAAAGACAGGCAGTGATG
TTGCTTTCGCCGCAGCCGCGACCTTTGCCCCCGAACGCCCTGCTCCTGTG
GTCGGAACTGCAGTTCATGGATAATCATACCTAGCATTTGTAAATGCTCT
GCTCTAGATGTAATTTAAGAAATTTTATATTAATGTTGGCGTTACAAAAA
ATACAGTTTAGATGTGCAAGTAGTAAACTTAAAGTTTTCCACAAGTTTAA
CAACTGAAATAACATTTAATAACATTTTGCAAAAATTAATTAAGTTTTGC
TATAAAAGAATAGAACATATATCAAACAAATATTGTAATTTCTGAAAATT
GAAAACTATTATAATTAATTATAACTATACAAGAATATAATATTCAGTAT
ATGTATTGTAAAAAAAAAAAAAAAAAAAA

LD15072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-RA 1680 cbc-RA 20..1679 1..1660 8300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9371873..9372425 758..206 2765 100 Minus
chr2R 21145070 chr2R 9371275..9371782 1266..759 2540 100 Minus
chr2R 21145070 chr2R 9370814..9371206 1659..1267 1965 100 Minus
chr2R 21145070 chr2R 9372494..9372699 205..1 950 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13484571..13485123 758..206 2765 100 Minus
2R 25286936 2R 13483973..13484480 1266..759 2540 100 Minus
2R 25286936 2R 13483511..13483904 1660..1267 1970 100 Minus
2R 25286936 2R 13485192..13485396 205..1 1025 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13485770..13486322 758..206 2765 100 Minus
2R 25260384 2R 13485172..13485679 1266..759 2540 100 Minus
2R 25260384 2R 13484710..13485103 1660..1267 1970 100 Minus
2R 25260384 2R 13486391..13486595 205..1 1025 100 Minus
Blast to na_te.dros performed 2019-03-16 19:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1320..1474 1493..1657 171 61.7 Plus
roo 9092 roo DM_ROO 9092bp 8483..8639 1470..1626 154 60.5 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 5935..6065 1510..1640 150 62.2 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5794..6017 1412..1651 137 57 Plus
Tc1-2 1644 Tc1-2 TC1-2 1644bp 1494..1603 1480..1583 131 63.4 Plus

LD15072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:17:03 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9370814..9371206 1267..1659 100 <- Minus
chr2R 9371275..9371782 759..1266 100 <- Minus
chr2R 9371873..9372425 206..758 100 <- Minus
chr2R 9372494..9372699 1..205 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:30 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 1..1272 113..1384 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:42 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1272 113..1384 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1272 113..1384 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:30 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 1..1272 113..1384 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:11 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1272 113..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:18 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 1..1659 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:42 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1659 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1654 6..1659 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:30 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 1..1659 1..1659 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:11 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 1..1654 6..1659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:03 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13483512..13483904 1267..1659 100 <- Minus
2R 13483973..13484480 759..1266 100 <- Minus
2R 13484571..13485123 206..758 100 <- Minus
2R 13485192..13485396 1..205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:03 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13483512..13483904 1267..1659 100 <- Minus
2R 13483973..13484480 759..1266 100 <- Minus
2R 13484571..13485123 206..758 100 <- Minus
2R 13485192..13485396 1..205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:03 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13483512..13483904 1267..1659 100 <- Minus
2R 13483973..13484480 759..1266 100 <- Minus
2R 13484571..13485123 206..758 100 <- Minus
2R 13485192..13485396 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:08 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9371017..9371409 1267..1659 100 <- Minus
arm_2R 9371478..9371985 759..1266 100 <- Minus
arm_2R 9372076..9372628 206..758 100 <- Minus
arm_2R 9372697..9372901 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:18 Download gff for LD15072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13484711..13485103 1267..1659 100 <- Minus
2R 13485172..13485679 759..1266 100 <- Minus
2R 13485770..13486322 206..758 100 <- Minus
2R 13486391..13486595 1..205 100   Minus

LD15072.pep Sequence

Translation from 112 to 1383

> LD15072.pep
MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY
EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM
EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG
SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS
KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF
VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF
YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA
VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP
QPRPLPPNALLLWSELQFMDNHT*

LD15072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11182-PA 425 GF11182-PA 1..425 1..423 2133 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22488-PA 423 GG22488-PA 1..423 1..423 2204 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23151-PA 425 GH23151-PA 1..424 1..422 2017 87.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-PA 423 CG5970-PA 1..423 1..423 2191 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21336-PA 425 GI21336-PA 1..424 1..422 1992 86.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17071-PA 425 GL17071-PA 1..425 1..423 2125 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19268-PA 425 GA19268-PA 5..425 3..423 2127 92.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20275-PA 423 GM20275-PA 1..423 1..423 2250 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25757-PA 423 GD25757-PA 1..423 1..423 2263 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19681-PA 425 GJ19681-PA 1..424 1..422 2024 88 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15921-PA 425 GK15921-PA 1..424 1..422 2085 90.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13359-PA 423 GE13359-PA 1..423 1..423 2232 97.6 Plus

LD15072.hyp Sequence

Translation from 112 to 1383

> LD15072.hyp
MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY
EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM
EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG
SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS
KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF
VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF
YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA
VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP
QPRPLPPNALLLWSELQFMDNHT*

LD15072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-PA 423 CG5970-PA 1..423 1..423 2191 100 Plus