BDGP Sequence Production Resources |
Search the DGRC for LD15072
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 150 |
Well: | 72 |
Vector: | pBS SK- |
Associated Gene/Transcript | cbc-RA |
Protein status: | LD15072.pep: gold |
Preliminary Size: | 1795 |
Sequenced Size: | 1679 |
Gene | Date | Evidence |
---|---|---|
CG5970 | 2001-01-01 | Release 2 assignment |
CG5970 | 2001-10-10 | Blastp of sequenced clone |
CG5970 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5970 | 2008-04-29 | Release 5.5 accounting |
CG5970 | 2008-08-15 | Release 5.9 accounting |
CG5970 | 2008-12-18 | 5.12 accounting |
1679 bp (1679 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061187
> LD15072.complete CAATTCCCATCGTTAGTGCACAGCTGATGTGAAATTGTTTACCTCCTAAA TTTTTGGATAATTACCCTATTTCGCCATTAAAACTCATTAGCAGAGCACT GAAGATACAGCCATGTCGGAGGACCAAGGCAAAGACTACACACTGGAGTC CGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTGCTGG TGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGTGAAG AAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCACGTA CCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTACATCT CCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACTGGAG CAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGGCCAT GGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATCCTGC TTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCTGGAT GTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTCTCAT CGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCGCTGG TCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTACAAT GCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATAGCAA CAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGGGTAA AGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGGAGCC TGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGCTTCG AGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGCGGCG TCGTCGAGCGCAGCAAGGAACTGCGACACGAGGCGAGGGATCAGCGCATC AAGGAGTACTTCTACGGCAATACAAGGGCGCCCTTCTATCCGTTCAGCTT CGAGGTGAAGTTCCAGGACCTGCGACTCTACAAGATCGGCGCACCGCCGC TGCCCGACTCCTGCATGCCAATTGGAATGAAGGCGGAGGACAACAAGACC AAGGTGGTGGCGGTTACACCCACGCCCGCCCTAATCCATCATGTGCTGGC CCTCAGCTTTGCCGAGTCCGTGGAGGACGATGTGATTGGCACCAATGTGG CCGGCTTTTGTTGCGTAACCGAAGTGGATATGGAAAGACAGGCAGTGATG TTGCTTTCGCCGCAGCCGCGACCTTTGCCCCCGAACGCCCTGCTCCTGTG GTCGGAACTGCAGTTCATGGATAATCATACCTAGCATTTGTAAATGCTCT GCTCTAGATGTAATTTAAGAAATTTTATATTAATGTTGGCGTTACAAAAA ATACAGTTTAGATGTGCAAGTAGTAAACTTAAAGTTTTCCACAAGTTTAA CAACTGAAATAACATTTAATAACATTTTGCAAAAATTAATTAAGTTTTGC TATAAAAGAATAGAACATATATCAAACAAATATTGTAATTTCTGAAAATT GAAAACTATTATAATTAATTATAACTATACAAGAATATAATATTCAGTAT ATGTATTGTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cbc-RA | 1680 | cbc-RA | 20..1679 | 1..1660 | 8300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9371873..9372425 | 758..206 | 2765 | 100 | Minus |
chr2R | 21145070 | chr2R | 9371275..9371782 | 1266..759 | 2540 | 100 | Minus |
chr2R | 21145070 | chr2R | 9370814..9371206 | 1659..1267 | 1965 | 100 | Minus |
chr2R | 21145070 | chr2R | 9372494..9372699 | 205..1 | 950 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13484571..13485123 | 758..206 | 2765 | 100 | Minus |
2R | 25286936 | 2R | 13483973..13484480 | 1266..759 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 13483511..13483904 | 1660..1267 | 1970 | 100 | Minus |
2R | 25286936 | 2R | 13485192..13485396 | 205..1 | 1025 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13485770..13486322 | 758..206 | 2765 | 100 | Minus |
2R | 25260384 | 2R | 13485172..13485679 | 1266..759 | 2540 | 100 | Minus |
2R | 25260384 | 2R | 13484710..13485103 | 1660..1267 | 1970 | 100 | Minus |
2R | 25260384 | 2R | 13486391..13486595 | 205..1 | 1025 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1320..1474 | 1493..1657 | 171 | 61.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 8483..8639 | 1470..1626 | 154 | 60.5 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5935..6065 | 1510..1640 | 150 | 62.2 | Plus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 5794..6017 | 1412..1651 | 137 | 57 | Plus |
Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 1494..1603 | 1480..1583 | 131 | 63.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9370814..9371206 | 1267..1659 | 100 | <- | Minus |
chr2R | 9371275..9371782 | 759..1266 | 100 | <- | Minus |
chr2R | 9371873..9372425 | 206..758 | 100 | <- | Minus |
chr2R | 9372494..9372699 | 1..205 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5970-RA | 1..1272 | 113..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1272 | 113..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1272 | 113..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5970-RA | 1..1272 | 113..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1272 | 113..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5970-RA | 1..1659 | 1..1659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1659 | 1..1659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1654 | 6..1659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5970-RA | 1..1659 | 1..1659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbc-RA | 1..1654 | 6..1659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13483512..13483904 | 1267..1659 | 100 | <- | Minus |
2R | 13483973..13484480 | 759..1266 | 100 | <- | Minus |
2R | 13484571..13485123 | 206..758 | 100 | <- | Minus |
2R | 13485192..13485396 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13483512..13483904 | 1267..1659 | 100 | <- | Minus |
2R | 13483973..13484480 | 759..1266 | 100 | <- | Minus |
2R | 13484571..13485123 | 206..758 | 100 | <- | Minus |
2R | 13485192..13485396 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13483512..13483904 | 1267..1659 | 100 | <- | Minus |
2R | 13483973..13484480 | 759..1266 | 100 | <- | Minus |
2R | 13484571..13485123 | 206..758 | 100 | <- | Minus |
2R | 13485192..13485396 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9371017..9371409 | 1267..1659 | 100 | <- | Minus |
arm_2R | 9371478..9371985 | 759..1266 | 100 | <- | Minus |
arm_2R | 9372076..9372628 | 206..758 | 100 | <- | Minus |
arm_2R | 9372697..9372901 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13484711..13485103 | 1267..1659 | 100 | <- | Minus |
2R | 13485172..13485679 | 759..1266 | 100 | <- | Minus |
2R | 13485770..13486322 | 206..758 | 100 | <- | Minus |
2R | 13486391..13486595 | 1..205 | 100 | Minus |
Translation from 112 to 1383
> LD15072.pep MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP QPRPLPPNALLLWSELQFMDNHT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11182-PA | 425 | GF11182-PA | 1..425 | 1..423 | 2133 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22488-PA | 423 | GG22488-PA | 1..423 | 1..423 | 2204 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23151-PA | 425 | GH23151-PA | 1..424 | 1..422 | 2017 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cbc-PA | 423 | CG5970-PA | 1..423 | 1..423 | 2191 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21336-PA | 425 | GI21336-PA | 1..424 | 1..422 | 1992 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17071-PA | 425 | GL17071-PA | 1..425 | 1..423 | 2125 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19268-PA | 425 | GA19268-PA | 5..425 | 3..423 | 2127 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20275-PA | 423 | GM20275-PA | 1..423 | 1..423 | 2250 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25757-PA | 423 | GD25757-PA | 1..423 | 1..423 | 2263 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19681-PA | 425 | GJ19681-PA | 1..424 | 1..422 | 2024 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15921-PA | 425 | GK15921-PA | 1..424 | 1..422 | 2085 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13359-PA | 423 | GE13359-PA | 1..423 | 1..423 | 2232 | 97.6 | Plus |
Translation from 112 to 1383
> LD15072.hyp MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP QPRPLPPNALLLWSELQFMDNHT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cbc-PA | 423 | CG5970-PA | 1..423 | 1..423 | 2191 | 100 | Plus |