Clone LD15123 Report

Search the DGRC for LD15123

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:151
Well:23
Vector:pBS SK-
Associated Gene/Transcripturi-RA
Protein status:LD15123.pep: gold
Sequenced Size:2343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11416 2003-01-01 Sim4 clustering to Release 3
CG11416 2004-10-13 Blastp of sequenced clone
ori 2008-04-29 Release 5.5 accounting
ori 2008-08-15 Release 5.9 accounting
uri 2008-12-18 5.12 accounting

Clone Sequence Records

LD15123.complete Sequence

2343 bp (2343 high quality bases) assembled on 2004-10-13

GenBank Submission: BT016108

> LD15123.complete
AACAATGGACCGGCGAGAGGATGCTCTGCTACAGGCCCTCCAAACGAACG
CCAGCGAGACAGAGCGCTGGGAAGCCTTCAAGCGCGATAATGAGAGCACC
ATCCGGAACTTGGACAAGTTCGCAAAGAATCTCAGCGTGGAGGTTATGGT
GCCCATTGGACGGAAGGCGCTGATGCCCGGCGAGCTGATCCACACCAACG
AGCTTCTGGTGGGTCATTACGAGGGCTACTTCTCCGCCTGCTCCTCCCAC
AAGGCCAAGGAGATCTGCCAGTACCGCCTGAAGCTGGCCGAGGAGCAGCT
GAAGAAGCTGGCCGTGGAGAACGATCTGTGGCAGAAAAAACTCCACACTC
CATTTGCGGAGGGGGCGGTTCCCAGTGGCGACCAAGTAGAAATTGTGGAG
GATTTCAACGAGGAGTCTCACAACAAGTGGTTGGCGGAGCACAGAAAGCG
AATGCGACAGCAAAAGCAGAAGGAGCGCCTCGAACGGGAGGCGGAACCTG
TGAAGAAAGATAATGAAGTGCTGCGGAAGCTAGAAGAGCGAGAAATGATG
GAGGAACTTGGTCTAGATCCAGATAATATCGACGAGGATCAGCTGCACGA
TATGCTGAATCAAGAACCTCTGAAATCCACCAACGAAAGTAGTCCTAAAT
CCTTAACCCAGGAAGAGGAGGATGAGCTGTGGAAGAAGCTGGAAGCCGAG
GAGCAGAACGAAGCCGATGAGCTCAGCTCAGAAGCAGAAGAAAGCCTTAA
AACAACGGATAACCTAGTGCGCCAGCTCATGTCCGGAGAAACAGAAACTC
CATCTTCCAAAAAACGCACTGCAGGAACCAATAGAAACGTGGAAATACAG
GATCCCATATCGGAAGATGATGGTGATGATGATGATGAGGGTGACCAGGA
GGAAGAGGTGCGAACCATACGGGAGCAGATGTCGCTGCTACCCAACGAAG
ATCGTGAGCCGTTCCTCAGAGCTCAACTGCATGTACTTAAAGCAAAAATG
AGGAAGATACAAAAGGTCAACTTTATAAGCGATGAGCTGATTCACTTGAT
GAATGTGGTGGTCATGCTAGAGGACGACCTACAGGACTTGGTATTTGAGC
AGGAACTGGAGGCCAGCGAGGAAGAGGAGGAGGTTGTCGAAAACAATCAT
CTTCCAGATGAGCCAAGCAAAGAGCTTTCGACTGTATCTGAATCCAGCAC
AAATAAACGTCGCATTTCGTTTGCCCTCGACGACGAAAAACTTGAATTCA
GAAGGGAGGAGACCGTTGCCGAAATGTTGCCCAATGCGAAAAAGAACTCG
AGGGATATCATCAAGCTAAATGCACCTCTTAAACCGGCAGGAGATCCACA
ACCCGCATCCATTAAAACAAAACGTCAAACAACCCAGGATATCTTGCAAA
AAGTAGAACGAAACATTGAGTTTGTCAAGGAAAACCAGAGTGTCCAGGAC
TTCGATTTACTCAATCGAATTATGGAAGAGTCTACGGGACTCATAAACAC
TTTACACATAAGTTTCACACATTCCGGTGCCATACCTTCGCCCAGTAGTG
ATCAAAGCGATGGCATACCTGGAAAGCCCTCTGATTTCTATGTGAGGTAT
GAGAAGGACCGGGCGCGGCCTAATGATTCGTTTCCTATCTATGTGAACGG
CTTTGAAGGCGAGGAGCACGTTAAAGTTCCCATAATGAGCGAAGCTGCAC
GTGGATCAGCCTATGAAGATCCCAGAAGTCAGTTCTCCAAGCCCAATTCT
TCGGAAATATGTTTCACACATTCCGGCTCCATAACTCCGACCAGTAATGA
TCAAAGTGATGATATACCTGGAAATCCATTTGATTTCTATGAGAAGTATG
AGAAGGACCGAGCGAAGTTCTCCAAGTCCAATTCCTCGGAGGGCGACGCT
ACTGACCCTGAATCAGCGACCAAATCGATCCTACGAAACAAATCTGCTGT
GGACCTGGAGCCGCATAATGTCAACCAGCAGCCCAAGAAGGGCAGGAAGG
TCCGGAATCAAAAGAAGAAGGAGCGCACCCTAGACGATGACCTGCGCGAC
ATGAGCGCCTACCAAAAGGTCATGCATGATCTTGTGGAGAAGGAGCCGAC
TGCACCGGAGCCTCTGCCACCGGGCAAGTTCATCGACTCGCATGCGCCAA
AGAAGCGGGTTAGCCGCTTCAAGGAGCAGCGAGCCCTTAACAAAACGTAG
CGAAGAGTAAAACTTCAGCTGGATATTACTAGTATATTTGTTCAAGTTTA
ATGTGAATTTGTATTACAAACACAACGCAAACAATAAACAACTACTGGTG
TGGTGTACATTCGTTTTAAAATTAAAAAAAAAAAAAAAAAAAA

LD15123.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
uri-RA 2442 uri-RA 120..2442 1..2323 11615 100 Plus
Fcp1.a 3169 Fcp1.a 3071..3169 2326..2228 495 100 Minus
Fcp1-RA 3206 Fcp1-RA 3108..3206 2326..2228 495 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20451973..20453371 334..1732 6935 99.7 Plus
chr2R 21145070 chr2R 20453421..20454014 1730..2323 2910 99.3 Plus
chr2R 21145070 chr2R 20451614..20451917 31..334 1505 99.7 Plus
chr2R 21145070 chr2R 20453147..20453254 1757..1864 300 85.2 Plus
chr2R 21145070 chr2R 20453448..20453555 1508..1615 300 85.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24566041..24567439 334..1732 6995 100 Plus
2R 25286936 2R 24567489..24568085 1730..2326 2985 100 Plus
2R 25286936 2R 24565682..24565985 31..334 1520 100 Plus
2R 25286936 2R 24567215..24567322 1757..1864 300 85.2 Plus
2R 25286936 2R 24567516..24567623 1508..1615 300 85.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24567240..24568638 334..1732 6995 100 Plus
2R 25260384 2R 24568688..24569284 1730..2326 2985 100 Plus
2R 25260384 2R 24566881..24567184 31..334 1520 100 Plus
2R 25260384 2R 24568715..24568822 1508..1615 300 85.1 Plus
2R 25260384 2R 24568414..24568521 1757..1864 300 85.1 Plus
2R 25260384 2R 24566781..24566815 1..35 175 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:44:15 has no hits.

LD15123.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:17 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20451514..20451547 1..34 100 -> Plus
chr2R 20451618..20451916 35..333 99 -> Plus
chr2R 20451973..20453371 334..1732 98 -> Plus
chr2R 20453424..20454014 1733..2323 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:33 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 1..2196 5..2200 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:30 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 1..2196 5..2200 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:05:10 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 1..2196 5..2200 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:24 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
ori-RA 1..2196 5..2200 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:22 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 1..2196 5..2200 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:54 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 24..2325 1..2302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:30 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 24..2346 1..2323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:10 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 29..2351 1..2323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:24 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
ori-RA 24..2325 1..2302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:22 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
uri-RA 29..2351 1..2323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:17 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24565582..24565615 1..34 100 -> Plus
2R 24565686..24565984 35..333 100 -> Plus
2R 24566041..24567439 334..1732 100 -> Plus
2R 24567492..24568082 1733..2323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:17 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24565582..24565615 1..34 100 -> Plus
2R 24565686..24565984 35..333 100 -> Plus
2R 24566041..24567439 334..1732 100 -> Plus
2R 24567492..24568082 1733..2323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:17 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24565582..24565615 1..34 100 -> Plus
2R 24565686..24565984 35..333 100 -> Plus
2R 24566041..24567439 334..1732 100 -> Plus
2R 24567492..24568082 1733..2323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:10 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20453105..20453138 1..34 100 -> Plus
arm_2R 20453209..20453507 35..333 100 -> Plus
arm_2R 20453564..20454962 334..1732 100 -> Plus
arm_2R 20455015..20455605 1733..2323 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:12 Download gff for LD15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24566903..24567201 35..333 100 -> Plus
2R 24567258..24568656 334..1732 100 -> Plus
2R 24568709..24569299 1733..2323 100   Plus
2R 24566799..24566832 1..34 100 -> Plus

LD15123.hyp Sequence

Translation from 0 to 2199

> LD15123.hyp
TMDRREDALLQALQTNASETERWEAFKRDNESTIRNLDKFAKNLSVEVMV
PIGRKALMPGELIHTNELLVGHYEGYFSACSSHKAKEICQYRLKLAEEQL
KKLAVENDLWQKKLHTPFAEGAVPSGDQVEIVEDFNEESHNKWLAEHRKR
MRQQKQKERLEREAEPVKKDNEVLRKLEEREMMEELGLDPDNIDEDQLHD
MLNQEPLKSTNESSPKSLTQEEEDELWKKLEAEEQNEADELSSEAEESLK
TTDNLVRQLMSGETETPSSKKRTAGTNRNVEIQDPISEDDGDDDDEGDQE
EEVRTIREQMSLLPNEDREPFLRAQLHVLKAKMRKIQKVNFISDELIHLM
NVVVMLEDDLQDLVFEQELEASEEEEEVVENNHLPDEPSKELSTVSESST
NKRRISFALDDEKLEFRREETVAEMLPNAKKNSRDIIKLNAPLKPAGDPQ
PASIKTKRQTTQDILQKVERNIEFVKENQSVQDFDLLNRIMEESTGLINT
LHISFTHSGAIPSPSSDQSDGIPGKPSDFYVRYEKDRARPNDSFPIYVNG
FEGEEHVKVPIMSEAARGSAYEDPRSQFSKPNSSEICFTHSGSITPTSND
QSDDIPGNPFDFYEKYEKDRAKFSKSNSSEGDATDPESATKSILRNKSAV
DLEPHNVNQQPKKGRKVRNQKKKERTLDDDLRDMSAYQKVMHDLVEKEPT
APEPLPPGKFIDSHAPKKRVSRFKEQRALNKT*

LD15123.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
uri-PA 731 CG11416-PA 1..731 2..732 3759 100 Plus

LD15123.pep Sequence

Translation from 4 to 2199

> LD15123.pep
MDRREDALLQALQTNASETERWEAFKRDNESTIRNLDKFAKNLSVEVMVP
IGRKALMPGELIHTNELLVGHYEGYFSACSSHKAKEICQYRLKLAEEQLK
KLAVENDLWQKKLHTPFAEGAVPSGDQVEIVEDFNEESHNKWLAEHRKRM
RQQKQKERLEREAEPVKKDNEVLRKLEEREMMEELGLDPDNIDEDQLHDM
LNQEPLKSTNESSPKSLTQEEEDELWKKLEAEEQNEADELSSEAEESLKT
TDNLVRQLMSGETETPSSKKRTAGTNRNVEIQDPISEDDGDDDDEGDQEE
EVRTIREQMSLLPNEDREPFLRAQLHVLKAKMRKIQKVNFISDELIHLMN
VVVMLEDDLQDLVFEQELEASEEEEEVVENNHLPDEPSKELSTVSESSTN
KRRISFALDDEKLEFRREETVAEMLPNAKKNSRDIIKLNAPLKPAGDPQP
ASIKTKRQTTQDILQKVERNIEFVKENQSVQDFDLLNRIMEESTGLINTL
HISFTHSGAIPSPSSDQSDGIPGKPSDFYVRYEKDRARPNDSFPIYVNGF
EGEEHVKVPIMSEAARGSAYEDPRSQFSKPNSSEICFTHSGSITPTSNDQ
SDDIPGNPFDFYEKYEKDRAKFSKSNSSEGDATDPESATKSILRNKSAVD
LEPHNVNQQPKKGRKVRNQKKKERTLDDDLRDMSAYQKVMHDLVEKEPTA
PEPLPPGKFIDSHAPKKRVSRFKEQRALNKT*

LD15123.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13629-PA 696 GF13629-PA 1..696 1..731 2242 63.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22982-PA 583 GG22982-PA 1..572 1..576 2401 85.6 Plus
Dere\GG22983-PA 115 GG22983-PA 5..115 621..731 460 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20003-PA 685 GH20003-PA 1..589 1..591 1372 53 Plus
Dgri\GH20003-PA 685 GH20003-PA 497..685 584..731 319 46 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
uri-PA 731 CG11416-PA 1..731 1..731 3759 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19184-PA 687 GI19184-PA 1..687 1..731 1690 52 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10222-PA 515 GL10222-PA 1..481 1..512 1311 54.4 Plus
Dper\GL20593-PA 129 GL20593-PA 17..129 621..731 304 64.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10990-PB 664 GA10990-PB 1..664 1..731 1767 53 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11876-PA 726 GM11876-PA 1..726 1..731 3231 90.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11874-PA 720 GD11874-PA 1..720 1..731 3113 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20246-PA 693 GJ20246-PA 1..692 1..730 1721 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17110-PA 669 GK17110-PA 1..575 1..579 1522 54.5 Plus
Dwil\GK17110-PA 669 GK17110-PA 491..669 581..730 273 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14420-PA 682 GE14420-PA 1..682 1..731 2779 82.4 Plus