Clone LD15196 Report

Search the DGRC for LD15196

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:151
Well:96
Vector:pBS SK-
Associated Gene/TranscriptCG5149-RA
Protein status:LD15196.pep: gold
Preliminary Size:1958
Sequenced Size:1885

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5149 2001-01-01 Release 2 assignment
CG5149 2001-11-29 Blastp of sequenced clone
CG5149 2003-01-01 Sim4 clustering to Release 3
CG5149 2008-04-29 Release 5.5 accounting
CG5149 2008-08-15 Release 5.9 accounting
CG5149 2008-12-18 5.12 accounting

Clone Sequence Records

LD15196.complete Sequence

1885 bp (1885 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069441

> LD15196.complete
CAGCTTGTGTTGTTTGTTTTTTATTTTCAATTAAAATCCGCGATCATCCG
CAGCTGCAGCTGCATTGTTTGTTTACCAGCCGTCGTAGCACCAGCCAACT
GAATTTCGTGTCCTGAGATGGGAAATGCGAGTGGCAAGCGGGAGACGGAT
AATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAA
CGCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAA
CTTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTAT
CTATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAA
GAAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGA
AAATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTC
AACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGT
GCACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATC
TTGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTT
ATGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCT
GGAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGG
TCTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATC
AAGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAA
TAGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATG
CTCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCG
AAAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAA
AGGACCAACGCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCG
GCTACGCGTCCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGAC
AGCTCATTGCTCTACACCTTAAGCCCTGCCATGCGGTGCTTTTCGGCCAC
AACTTATAACAATCACTATCAGTATTTGAATTTGAATCAGCAGACTATGC
CGAATGGCCTGGGCATGGGCGGTCAGTTTGATTTTTGGGGCCTTTGGATT
GACTGCAGTTTCGGCGATGGACAAAGCGTTGAAAGTTGCACTACATATCG
AGACTACGTGCAGTTGAGTAAACGGAAACAGTTCAAAATACGAAACATGG
AAGTTTGGGCCGTAGGAGACTTACCAGTTAAAGAAGAAGACGAAGAAGGC
GACGGTCACAAACGTTCTGTGCTGGATGGCAATTTGGAAGATCGGGCCAT
GTTGGAAATTGCGGGCAAGAAAATGCACTCGGATGGATTGCGTGAGCCCA
ACATGGATGATTGATATTATGTGAAACTATTTAAGGAAAAAGTTTTGTTT
TATCATCGAGAATTTGTGAGACCATGCCCGATATGGGTGTGCAGTTAATG
ATTCAATTCAGTTTCCTTAGCTTTTTTGCAATCCCTATCGAACACACAAA
AAAAGTCCTGCGAACAAAAGAGTATTTGTTCAATCCATTCCTATAAACGT
TTTTGTTTAGGTATTAATGTTTATATATACAATGTATAATGGATATAGTT
TATGAAATACTGAGAGTATTGTTGTTGCGTTTTAGATCTTAAAGTGAGAA
AAGTAAATCATTTAAATGATGTAACAAAGAAGCAAGCATAATAAGCAATG
TTAATTCGTCGAATTTTTCCCATTTTTATCCTACGTCAATAAAATGCAAA
TTAATTGCTGAATTTAAAAAAAAAAAAAAAAAAAA

LD15196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1930 CG5149-RA 37..1902 1..1866 9330 100 Plus
CG5149-RB 2020 CG5149-RB 37..1304 1..1268 6340 100 Plus
CG5149-RB 2020 CG5149-RB 1422..2020 1267..1865 2995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7383516..7384021 1865..1360 2530 100 Minus
chr2L 23010047 chr2L 7384463..7384838 1162..787 1865 99.7 Minus
chr2L 23010047 chr2L 7384900..7385215 787..472 1565 99.7 Minus
chr2L 23010047 chr2L 7387009..7387255 247..1 1235 100 Minus
chr2L 23010047 chr2L 7385459..7385684 471..246 1130 100 Minus
chr2L 23010047 chr2L 7384293..7384400 1268..1161 525 99.1 Minus
chr2L 23010047 chr2L 7384084..7384175 1358..1267 400 95.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7384485..7384991 1866..1360 2535 100 Minus
2L 23513712 2L 7385430..7385805 1162..787 1880 100 Minus
2L 23513712 2L 7385867..7386182 787..472 1580 100 Minus
2L 23513712 2L 7387974..7388220 247..1 1235 100 Minus
2L 23513712 2L 7386424..7386649 471..246 1130 100 Minus
2L 23513712 2L 7385260..7385367 1268..1161 540 100 Minus
2L 23513712 2L 7385050..7385142 1359..1267 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7384485..7384991 1866..1360 2535 100 Minus
2L 23513712 2L 7385430..7385805 1162..787 1880 100 Minus
2L 23513712 2L 7385867..7386182 787..472 1580 100 Minus
2L 23513712 2L 7387974..7388220 247..1 1235 100 Minus
2L 23513712 2L 7386424..7386649 471..246 1130 100 Minus
2L 23513712 2L 7385260..7385367 1268..1161 540 100 Minus
2L 23513712 2L 7385050..7385142 1359..1267 465 100 Minus
Blast to na_te.dros performed 2019-03-15 22:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2781..2874 1284..1193 141 64.2 Minus

LD15196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:22:42 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7384293..7384399 1162..1268 99 <- Minus
chr2L 7383516..7384021 1360..1865 100 <- Minus
chr2L 7384083..7384173 1269..1359 94 <- Minus
chr2L 7384464..7384837 788..1161 99 <- Minus
chr2L 7384900..7385215 472..787 99 <- Minus
chr2L 7385459..7385683 247..471 100 <- Minus
chr2L 7387010..7387255 1..246 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:40 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 118..1464 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:57 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 118..1464 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:16:03 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 118..1464 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:39 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 118..1464 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:57 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 118..1464 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:20 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 29..1893 1..1865 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:57 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 29..1893 1..1865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:16:03 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 34..1898 1..1865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:40 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 29..1893 1..1865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:57 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 34..1898 1..1865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:42 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384486..7384991 1360..1865 100 <- Minus
2L 7385050..7385140 1269..1359 100 <- Minus
2L 7385260..7385366 1162..1268 100 <- Minus
2L 7385431..7385804 788..1161 100 <- Minus
2L 7385867..7386182 472..787 100 <- Minus
2L 7386424..7386648 247..471 100 <- Minus
2L 7387975..7388220 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:42 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384486..7384991 1360..1865 100 <- Minus
2L 7385050..7385140 1269..1359 100 <- Minus
2L 7385260..7385366 1162..1268 100 <- Minus
2L 7385431..7385804 788..1161 100 <- Minus
2L 7385867..7386182 472..787 100 <- Minus
2L 7386424..7386648 247..471 100 <- Minus
2L 7387975..7388220 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:42 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384486..7384991 1360..1865 100 <- Minus
2L 7385050..7385140 1269..1359 100 <- Minus
2L 7385260..7385366 1162..1268 100 <- Minus
2L 7385431..7385804 788..1161 100 <- Minus
2L 7385867..7386182 472..787 100 <- Minus
2L 7386424..7386648 247..471 100 <- Minus
2L 7387975..7388220 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:16:03 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7385050..7385140 1269..1359 100 <- Minus
arm_2L 7385260..7385366 1162..1268 100 <- Minus
arm_2L 7384486..7384991 1360..1865 100 <- Minus
arm_2L 7385431..7385804 788..1161 100 <- Minus
arm_2L 7385867..7386182 472..787 100 <- Minus
arm_2L 7386424..7386648 247..471 100 <- Minus
arm_2L 7387975..7388220 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:05 Download gff for LD15196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384486..7384991 1360..1865 100 <- Minus
2L 7385050..7385140 1269..1359 100 <- Minus
2L 7385260..7385366 1162..1268 100 <- Minus
2L 7385431..7385804 788..1161 100 <- Minus
2L 7385867..7386182 472..787 100 <- Minus
2L 7386424..7386648 247..471 100 <- Minus
2L 7387975..7388220 1..246 100   Minus

LD15196.pep Sequence

Translation from 117 to 1463

> LD15196.pep
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDD*

LD15196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14028-PA 450 GF14028-PA 1..450 1..448 2227 90 Plus
Dana\GF16064-PA 267 GF16064-PA 116..265 243..398 167 29.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23536-PA 447 GG23536-PA 1..447 1..448 2366 97.3 Plus
Dere\GG11111-PA 192 GG11111-PA 41..190 243..398 166 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13150-PA 448 GH13150-PA 1..448 1..448 2086 83.7 Plus
Dgri\GH22698-PA 266 GH22698-PA 115..264 243..398 173 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 448 CG5149-PA 1..448 1..448 2394 100 Plus
mtd-PQ 192 CG32464-PQ 48..190 249..398 168 29.1 Plus
mtd-PH 192 CG32464-PH 48..190 249..398 168 29.1 Plus
mtd-PA 210 CG32464-PA 66..208 249..398 168 29.1 Plus
mtd-PI 213 CG32464-PI 69..211 249..398 168 29.1 Plus
mtd-PC 267 CG32464-PC 123..265 249..398 168 29.1 Plus
mtd-PR 789 CG32464-PR 645..787 249..398 168 29.1 Plus
mtd-PF 869 CG32464-PF 725..867 249..398 168 29.1 Plus
mtd-PAA 871 CG32464-PAA 727..869 249..398 168 29.1 Plus
mtd-PM 1012 CG32464-PM 868..1010 249..398 168 29.1 Plus
mtd-PO 1025 CG32464-PO 881..1023 249..398 168 29.1 Plus
mtd-PG 1033 CG32464-PG 889..1031 249..398 168 29.1 Plus
mtd-PK 1055 CG32464-PK 911..1053 249..398 168 29.1 Plus
mtd-PT 1106 CG32464-PT 962..1104 249..398 168 29.1 Plus
mtd-PS 1106 CG32464-PS 962..1104 249..398 168 29.1 Plus
mtd-PX 1127 CG32464-PX 983..1125 249..398 168 29.1 Plus
mtd-PY 1158 CG32464-PY 1014..1156 249..398 168 29.1 Plus
mtd-PW 1180 CG32464-PW 1036..1178 249..398 168 29.1 Plus
mtd-PU 1246 CG32464-PU 1102..1244 249..398 168 29.1 Plus
mtd-PJ 1270 CG32464-PJ 1126..1268 249..398 168 29.1 Plus
mtd-PB 1270 CG32464-PB 1126..1268 249..398 168 29.1 Plus
mtd-PN 1270 CG32464-PN 1126..1268 249..398 168 29.1 Plus
mtd-PP 1314 CG32464-PP 1170..1312 249..398 168 29.1 Plus
mtd-PV 1344 CG32464-PV 1200..1342 249..398 168 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17790-PA 449 GI17790-PA 1..449 1..448 2010 80.8 Plus
Dmoj\GI10212-PA 267 GI10212-PA 116..265 243..398 169 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19228-PA 450 GL19228-PA 1..450 1..448 2042 83.8 Plus
Dper\GL22193-PA 210 GL22193-PA 59..208 243..398 176 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18692-PA 450 GA18692-PA 1..450 1..448 2042 83.8 Plus
Dpse\GA27407-PA 210 GA27407-PA 59..208 243..398 176 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13572-PA 448 GM13572-PA 1..448 1..448 2414 98.9 Plus
Dsec\GM10650-PA 192 GM10650-PA 41..190 243..398 166 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22498-PA 448 GD22498-PA 1..448 1..448 2419 99.3 Plus
Dsim\GD19632-PA 267 GD19632-PA 116..265 243..398 167 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17615-PA 448 GJ17615-PA 1..448 1..448 2072 82.8 Plus
Dvir\GJ11014-PA 267 GJ11014-PA 116..265 243..398 170 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24727-PA 450 GK24727-PA 1..450 1..448 2081 86.2 Plus
Dwil\GK14285-PA 268 GK14285-PA 117..266 243..398 165 29.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18362-PA 448 GE18362-PA 1..448 1..448 2402 98.2 Plus
Dyak\GE25299-PA 192 GE25299-PA 41..190 243..398 166 29.1 Plus

LD15196.hyp Sequence

Translation from 117 to 1463

> LD15196.hyp
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDD*

LD15196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 448 CG5149-PA 1..448 1..448 2394 100 Plus
mtd-PQ 192 CG32464-PQ 48..190 249..398 168 29.1 Plus
mtd-PH 192 CG32464-PH 48..190 249..398 168 29.1 Plus
mtd-PA 210 CG32464-PA 66..208 249..398 168 29.1 Plus
mtd-PI 213 CG32464-PI 69..211 249..398 168 29.1 Plus