Clone LD15224 Report

Search the DGRC for LD15224

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:152
Well:24
Vector:pBS SK-
Associated Gene/TranscriptCG3732-RA
Protein status:LD15224.pep: gold
Preliminary Size:1421
Sequenced Size:1247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3732 2001-01-01 Release 2 assignment
CG3732 2001-10-10 Blastp of sequenced clone
CG3732 2003-01-01 Sim4 clustering to Release 3
CG3732 2008-04-29 Release 5.5 accounting
CG3732 2008-08-15 Release 5.9 accounting
CG3732 2008-12-18 5.12 accounting

Clone Sequence Records

LD15224.complete Sequence

1247 bp (1247 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061190

> LD15224.complete
TTTTGACCACTTTATTTCGTACCGTATACAGAATATAATATTGGTAAAAA
AAATCTGTTAAATGCTGCTCCTGAGGCCTAAGGAGGATCACTTGGACGCC
CGTTAGCATTATCCTTTGGCAGAGGACGCAGCCAAGGCACAGACATGTCC
AGTTCAAATGGAGGCGTGGCATCAGGGGCCGCGGGAAGCAGCGGCGTCGC
TTCGCCTGGCGATTGGATTTGCCCAGATTACGACTGTCGCCATCTGAACT
TCGCCCGCCGTTTGCAGTGCAACAAATGCGACCGGGACCGCGATGGCAGT
GATAAGCCGGAGCGCGACAGGGATCGAGACCGGGAGCGGGAACGCGGCAA
CGGGAGCAGCAGCAGTAGCAGCAGCTCAAGCAAGAAAAAGCTGGGCACCG
AGATCGGCAAGGCGGCGGCCGACAAGTCGCGGGGCTTGTTCAGCGCCGAG
GACTGGCAGTGCAGCAAATGCGCGAATGTGAACTGGGCCCGTCGCCAAAC
CTGCAATATGTGCAACGCTCCTAAGTTCTCGGATGTGGAGGAGCGGACTG
GCTTTGGCGGTGGATACAATGATCGCGGCGTGGTAGAGTACAAGGATCGT
CAGGATTCGGATAGCGAGTACGATGAGTTCGGTCGTCGCAAGAAGCGAAA
GCACGGCGAGCATAGAGAGGACTCAAAGAGGCCCAGAAGGTCTAGCCGAG
ATGAGCAGCGGAATGATGAGGAAGAAGATGAGGACGACGACGAGGGAGAC
GACGAGGATCTATCAAAGTACGATCTCTGGGGCGACGAAGAAGTCACTTC
CACGGATGTCAAGAGCAAAGAGGGCACTGGCAATGGCGACAAGGAGCGCA
AGCGTACCTCACGCGACTCTACCTCTTCCGTGTCCTCCTCGTCGTCGTCC
AGTTCGTCCAGCTCCAGCGACTCTTCGTCGAGCAGCTCGAGTAGCTCCAG
CAGCGGCGGCAGGCGGAAAACCTCCTCGTCGGGCAGACGTTAGCTGCAAC
CGTACCCTTTAGGAACTTCTCTTTAATTGCGTCTGTTTTTACACATTTTT
CTAAGGCAATCATGCTTGCCTTCTTATTTATTTGCCAGTATGCGCTCAGA
TGATCATGACATAGGGTACGATGTCCAGCCTAACTCTTAAAGTATAATAA
AACATATAATTTAAGAAAACCAGCATTTACATTTATTGTAAGACACCGTA
ACATTAAAGAATCGGGCCTAATTGAAAAAAAAAAAAAAAAAAAAAAA

LD15224.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1345 CG3732-RA 111..1336 1..1226 6130 100 Plus
bonsai-RA 1070 bonsai-RA 934..1070 1226..1090 685 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18525321..18525992 1224..550 3190 98.5 Minus
chr2R 21145070 chr2R 18526047..18526364 551..234 1575 99.7 Minus
chr2R 21145070 chr2R 18526442..18526674 233..1 1150 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22638805..22639481 1226..550 3385 100 Minus
2R 25286936 2R 22639536..22639853 551..234 1590 100 Minus
2R 25286936 2R 22639931..22640163 233..1 1165 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22640004..22640680 1226..550 3385 100 Minus
2R 25260384 2R 22640735..22641052 551..234 1590 100 Minus
2R 25260384 2R 22641130..22641362 233..1 1165 100 Minus
Blast to na_te.dros performed 2019-03-16 11:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 269..385 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 281..410 134 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 329..419 129 66.3 Plus

LD15224.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:21:17 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18525321..18525991 551..1224 98 <- Minus
chr2R 18526048..18526364 234..550 89 <- Minus
chr2R 18526442..18526674 1..233 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:45 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..849 145..993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:34 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..849 145..993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:57 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..849 145..993 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:19 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..849 145..993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:05 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..849 145..993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:08 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:34 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:57 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 39..1262 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:19 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:05 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 39..1262 1..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:17 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22638807..22639480 551..1224 100 <- Minus
2R 22639537..22639853 234..550 100 <- Minus
2R 22639931..22640163 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:17 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22638807..22639480 551..1224 100 <- Minus
2R 22639537..22639853 234..550 100 <- Minus
2R 22639931..22640163 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:17 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22638807..22639480 551..1224 100 <- Minus
2R 22639537..22639853 234..550 100 <- Minus
2R 22639931..22640163 1..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:57 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18527042..18527358 234..550 100 <- Minus
arm_2R 18527436..18527668 1..233 100   Minus
arm_2R 18526312..18526985 551..1224 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:09 Download gff for LD15224.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22640736..22641052 234..550 100 <- Minus
2R 22641130..22641362 1..233 100   Minus
2R 22640006..22640679 551..1224 100 <- Minus

LD15224.pep Sequence

Translation from 144 to 992

> LD15224.pep
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRR*

LD15224.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13007-PA 286 GF13007-PA 22..286 23..282 803 79.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21779-PA 282 GG21779-PA 1..282 1..282 1391 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20335-PA 305 GH20335-PA 21..235 21..226 675 74 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 282 CG3732-PA 1..282 1..282 1484 100 Plus
PNUTS-PA 628 CG33526-PA 281..411 148..279 156 34.1 Plus
PNUTS-PB 628 CG33526-PB 281..411 148..279 156 34.1 Plus
PNUTS-PE 1135 CG33526-PE 281..411 148..279 156 34.1 Plus
PNUTS-PD 1135 CG33526-PD 281..411 148..279 156 34.1 Plus
Top1-PD 970 CG6146-PD 51..204 59..272 155 27.4 Plus
Top1-PC 974 CG6146-PC 55..208 59..272 155 27.4 Plus
Top1-PA 974 CG6146-PA 55..208 59..272 155 27.4 Plus
CG3918-PA 321 CG3918-PA 111..242 143..279 150 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20006-PA 311 GI20006-PA 22..237 19..231 673 73.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10466-PA 284 GL10466-PA 24..232 21..238 767 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17648-PA 284 GA17648-PA 24..232 21..238 767 78.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15630-PA 283 GM15630-PA 1..283 1..282 935 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25119-PA 282 GD25119-PA 1..282 1..282 1402 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21255-PA 321 GJ21255-PA 28..246 23..232 658 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17903-PA 284 GK17903-PA 15..214 19..218 645 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11855-PA 284 GE11855-PA 1..284 1..282 1360 96.5 Plus

LD15224.hyp Sequence

Translation from 144 to 992

> LD15224.hyp
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRR*

LD15224.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 282 CG3732-PA 1..282 1..282 1484 100 Plus
PNUTS-PA 628 CG33526-PA 281..411 148..279 156 34.1 Plus
PNUTS-PB 628 CG33526-PB 281..411 148..279 156 34.1 Plus
PNUTS-PE 1135 CG33526-PE 281..411 148..279 156 34.1 Plus
PNUTS-PD 1135 CG33526-PD 281..411 148..279 156 34.1 Plus