Clone LD15323 Report

Search the DGRC for LD15323

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:153
Well:23
Vector:pBS SK-
Associated Gene/TranscriptCG5734-RA
Protein status:LD15323.pep: gold
Preliminary Size:2347
Sequenced Size:2223

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5734 2001-01-01 Release 2 assignment
CG5734 2001-10-10 Blastp of sequenced clone
CG5734 2003-01-01 Sim4 clustering to Release 3
CG5734 2008-04-29 Release 5.5 accounting
CG5734 2008-08-15 Release 5.9 accounting
CG5734 2008-12-18 5.12 accounting

Clone Sequence Records

LD15323.complete Sequence

2223 bp (2223 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061191

> LD15323.complete
TTACACATCTGGGCGAAAAGTGAACAATTGAAGCTGCGAATTAATTGAAT
TGAGAGCAATTGCTGCGCTTAGCAGAGGAGCCGCTTGACAATGCAGGTGT
GATCCGCTGGCCGGGTGCCAATGCACAGCAGCAGGATGCACTTTTCCATA
CCGGACACCCAGGAGCTGGGCTCCTCGCCCACCTACACGGCCTACAACAT
ACACATCAACGGCATCCACCACTGCGTCCTGCGCTACAAACAGCTGCACT
CGCTGAACGACCAGCTGCGCAGGCACTGTGTGGGCGTCCCCCTGCCGCCC
TTTCCACCCAAACGCCTCCTACCGCTCACCAATGGCCAACTGGAGGCGCG
TCGCAGCTCCCTGGAGCAGTACCTGCAGGCGGTGGGTCAGGACAACCGTC
TGGCCCGATCCGCCCACTTGCAGCAGTTCTTGCAGCGCGCCCAACTGGAC
ACGGCACTGGCCGAGGGCCAAGTCGCCACCGATTGCGAGGAACAGCAGCT
GGAGGTGCAGGTCTATACGAATCCCGCGGGCGAACGCATCCTGGTCAACT
GCTCGGTGCAGCAGAACGCCAGTGCGCTGCTCAAGAGCGTCTGCCGGGAG
TTACAGCTGCCCGATGAGCTGGTGCGCTTCTTTTGCCTGTTCCTAGTGCG
ACGTCAAAGGAAATCCGGCGAACTGCACCTGGTGCGACGCCTCATGGATT
TCGAGTCGCCGTATATAACGCGTCTGCATGTACAGCCCTGCGAACTGCTG
CTGCGTACCTGCTACTGGGACTCCAGTAGAGATGCCAAGCTAACTGGAAG
CAAAGTGGCATTGAATTTGCTCTACAACCAGACCGTTGCGGACGTGAACC
GCGAGTGGGTGGTCATCTGTACGCCCGGCGAGGGTCGCCAACTGAACAGC
CTGCAGATGCAGGGAAGAGCGCGTGAGTACATGGACCTGGTGCGTCAGCT
GCCCTCCTACGGCTGCCTGCAGTTCGATGAGGCGCAGGTGGACTATCCGG
AGCCGGACACAATGGCGTTAATTAGCATTGGCAACAAGGAGTTGGCTCTG
CGCACGGCACGTGGCGTTAAGATCTACGAGACGAAGTTCCGGGTGACTAG
GATGCGCTCGTGGCGCGTCAGCGTTACACACATTACGCTGGAATCGCGGC
TGGAACCCACGCATCTCCAGCTGGCCTTTGAATATCTGATTGGCAAGCAG
ACGCTGCGCTGGATCACTATTAACAGTGATCAGGCCATGCTGATGTCCGT
GTGCCTGCAGGCCATGGTCGACGAGTTGTTACAGCGAGGCGCTGGCAGTG
GAAAGGATCAGAATAGCGATGAGGAGCAGGAACAGAATGCAGTCACGTCG
TCCTCATCAACACCCAGCTCAACCTGTTCCACGTCGACATGGGCATCCTC
CACGTGTTCTACATCCACTGCGCCCACAACGCCGCCAGTTAGGTTTCTGT
CCGAAGATTCGGCGCCCAGATCCAAACCCAGGTTGACTACATCGCGCACC
TTCGGAGCCGTATTCTTCCGCAACGACGTGGTGGACAATGGAGCACGCGT
GGCCAACGGTGCGTTCGAGGGCATCGGCGATGATGATCTATGAGAGTGCT
AAAGGAATGCTTGCCGTGAGTTGCCAAAAATCGAGTCCTTTTTCCGAAAA
GGAAAAGGCGCGCCAAACTATTTAGAAAACCATTGCGTCTGCGGATGCAG
GAGCAGCTTAACTCATTCGACTAAGGTTGAAGATTTTATATATATGTGTG
TGTAATAGAAAAGACTTTAATCTATCTGCTACTTGCAAGTGTTACGAAGC
CCGAACTAAGTGGGATTTGCGCAGCATAAGTTTAATTGAATGAAGGCGCT
AAAATGTGTTGTAAAGAATTGAATGCTCAAGATGAATGGCACGTTTTACC
ATCATTATATCTAGATCTACGTGTTGAACTATTGTAAATGATCTGTAAAT
GGATGCTCGACGGATACTTTTATCTCTTTTATCATTTCTTGTATTGTAAT
ATATGTACGTGGAACTTTCTTTACTTTAGAGATAGTTGAAAATATGTTAT
GCATTTTACAAAAATAAATGTACTGATGACTATGGCATCCGGAACGAGTC
CAACCGGATATTTCAAGCAAAAAAGAAAAAGAAACTAAACAATGAACTAT
GAATGTACATTCCCTTATCTGTTGACTCACTTCCAAATAAATGACAAAAA
TGTTTAAAAAAAAAAAAAAAAAA

LD15323.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5734-RA 2205 CG5734-RA 1..2205 1..2205 11025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10203608..10205812 2205..1 11025 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10204757..10206961 2205..1 11025 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10204757..10206961 2205..1 11025 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:33:21 has no hits.

LD15323.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:34:12 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10203608..10205812 1..2205 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:50 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..1473 121..1593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:35 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..1473 121..1593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:25 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..1473 121..1593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:20 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..1473 121..1593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:33:14 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..1473 121..1593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:10 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..2205 1..2205 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:35 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..2205 1..2205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:25 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..2205 1..2205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:20 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..2205 1..2205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:33:14 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5734-RA 1..2205 1..2205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:12 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10204757..10206961 1..2205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:12 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10204757..10206961 1..2205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:12 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10204757..10206961 1..2205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:25 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10204757..10206961 1..2205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:10 Download gff for LD15323.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10204757..10206961 1..2205 100   Minus

LD15323.pep Sequence

Translation from 120 to 1592

> LD15323.pep
MHSSRMHFSIPDTQELGSSPTYTAYNIHINGIHHCVLRYKQLHSLNDQLR
RHCVGVPLPPFPPKRLLPLTNGQLEARRSSLEQYLQAVGQDNRLARSAHL
QQFLQRAQLDTALAEGQVATDCEEQQLEVQVYTNPAGERILVNCSVQQNA
SALLKSVCRELQLPDELVRFFCLFLVRRQRKSGELHLVRRLMDFESPYIT
RLHVQPCELLLRTCYWDSSRDAKLTGSKVALNLLYNQTVADVNREWVVIC
TPGEGRQLNSLQMQGRAREYMDLVRQLPSYGCLQFDEAQVDYPEPDTMAL
ISIGNKELALRTARGVKIYETKFRVTRMRSWRVSVTHITLESRLEPTHLQ
LAFEYLIGKQTLRWITINSDQAMLMSVCLQAMVDELLQRGAGSGKDQNSD
EEQEQNAVTSSSSTPSSTCSTSTWASSTCSTSTAPTTPPVRFLSEDSAPR
SKPRLTTSRTFGAVFFRNDVVDNGARVANGAFEGIGDDDL*

LD15323.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14132-PA 479 GF14132-PA 1..479 6..490 1923 74.6 Plus
Dana\GF21468-PA 542 GF21468-PA 181..534 8..385 228 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23973-PA 483 GG23973-PA 1..483 6..490 2311 95.3 Plus
Dere\GG18475-PA 537 GG18475-PA 176..529 8..385 225 23.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10647-PA 521 GH10647-PA 1..521 6..490 1486 59.5 Plus
Dgri\GH24875-PA 499 GH24875-PA 138..491 8..385 243 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5734-PA 490 CG5734-PA 1..490 1..490 2541 100 Plus
CG32758-PD 430 CG32758-PD 70..422 9..385 219 23.9 Plus
CG32758-PC 443 CG32758-PC 83..435 9..385 219 23.9 Plus
CG32758-PA 531 CG32758-PA 171..523 9..385 219 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10824-PA 508 GI10824-PA 1..508 6..490 1527 61.6 Plus
Dmoj\GI14707-PA 503 GI14707-PA 142..432 8..314 233 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18940-PA 483 GL18940-PA 1..483 6..490 1889 74.9 Plus
Dper\GL14168-PA 514 GL14168-PA 153..506 8..385 224 23.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19093-PA 483 GA19093-PA 1..483 6..490 1893 74.9 Plus
Dpse\GA17119-PA 514 GA17119-PA 153..506 8..385 224 23.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11949-PA 490 GM11949-PA 1..490 1..490 2604 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22297-PA 485 GD22297-PA 1..485 6..490 2578 99 Plus
Dsim\GD16238-PA 531 GD16238-PA 170..523 8..385 225 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18286-PA 505 GJ18286-PA 1..505 6..490 1501 61.6 Plus
Dvir\GJ16770-PA 498 GJ16770-PA 137..497 8..392 229 23.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18387-PA 529 GK18387-PA 1..529 6..490 1483 58.5 Plus
Dwil\GK10235-PA 522 GK10235-PA 161..514 8..385 228 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26362-PA 490 GE26362-PA 1..490 1..490 2359 95.5 Plus
Dyak\GE16793-PA 531 GE16793-PA 170..523 8..385 225 23.8 Plus

LD15323.hyp Sequence

Translation from 120 to 1592

> LD15323.hyp
MHSSRMHFSIPDTQELGSSPTYTAYNIHINGIHHCVLRYKQLHSLNDQLR
RHCVGVPLPPFPPKRLLPLTNGQLEARRSSLEQYLQAVGQDNRLARSAHL
QQFLQRAQLDTALAEGQVATDCEEQQLEVQVYTNPAGERILVNCSVQQNA
SALLKSVCRELQLPDELVRFFCLFLVRRQRKSGELHLVRRLMDFESPYIT
RLHVQPCELLLRTCYWDSSRDAKLTGSKVALNLLYNQTVADVNREWVVIC
TPGEGRQLNSLQMQGRAREYMDLVRQLPSYGCLQFDEAQVDYPEPDTMAL
ISIGNKELALRTARGVKIYETKFRVTRMRSWRVSVTHITLESRLEPTHLQ
LAFEYLIGKQTLRWITINSDQAMLMSVCLQAMVDELLQRGAGSGKDQNSD
EEQEQNAVTSSSSTPSSTCSTSTWASSTCSTSTAPTTPPVRFLSEDSAPR
SKPRLTTSRTFGAVFFRNDVVDNGARVANGAFEGIGDDDL*

LD15323.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5734-PA 490 CG5734-PA 1..490 1..490 2541 100 Plus
CG32758-PD 430 CG32758-PD 70..422 9..385 219 23.9 Plus
CG32758-PC 443 CG32758-PC 83..435 9..385 219 23.9 Plus
CG32758-PA 531 CG32758-PA 171..523 9..385 219 23.9 Plus