Clone LD15332 Report

Search the DGRC for LD15332

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:153
Well:32
Vector:pBS SK-
Associated Gene/TranscriptZC3H3-RA
Protein status:LD15332.pep: gold
Preliminary Size:1810
Sequenced Size:2046

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6694 2002-01-01 Sim4 clustering to Release 2
CG6694 2003-01-01 Sim4 clustering to Release 3
CG6694 2003-07-26 Blastp of sequenced clone
CG6694 2008-04-29 Release 5.5 accounting
CG6694 2008-08-15 Release 5.9 accounting
CG6694 2008-12-18 5.12 accounting

Clone Sequence Records

LD15332.complete Sequence

2046 bp (2046 high quality bases) assembled on 2003-07-26

GenBank Submission: BT010061

> LD15332.complete
AAAATGTGCAATACAAAGAAGCATTGGAAAGAAGTGTAAAAATTGAGAAA
TAACCAAAAATTGGAACGGATTAATTCATTAGGTTAAGCCAAGGAAGCAA
CGAAATGTTGCCGCATATAAGTGCCGACGAGGCACAGCCGTCTATGTCGC
GAAAGGTGTACATCAATCCGAATTTTCAGCTGCAAGGTCAAACGGCGCAT
CAGCTGCCGTTCCAAGTGCCCTTCCAGGCGTTCCAGGCGCCACTGCAGCC
TCAGCCCGCGATCCATATCAATCCGCACTTTCTGAATCGCCAGCGGGCCA
TGTACGACCAATACCAGCGGGAGCAGCAGGAGCAGCTTATGATGCAACAA
GTTTCCGCCTCGCACTATCGACTGGATCCAACGATACACCTACTGGCGAC
TCCACCTCCTCCGCCCGCCAAGATCATCAGCAAAGTGAGCACGTGTCTCG
TGCGCAAGCCATCAGTGGTGGCAAGTGGTCCGGCGGTGAAGCTCGCTGCT
TCAGTACCTGTGCCCACTGTTTCCAGCCTGGTGCAGCCTCCATTGGTAAG
CATTTCCAAGCGGAAAATTGTGAGGCAAGGAGCATTGAAAGCAGCGCCAG
CGGTTGCTGCCCTCCATCCTCCTCCACCTGCTAAACGCACTAGGTACAAA
TTAGTGCGTTCCATATCACTTACCTGCACACCGCTGGTCAAAAAGCGTCG
TCCTCTACGCGAGTTTGTGGGCCAGTACGCCCTGAGACGCACCAATGAAG
CGCAGCCCAACAGAAAACTGAGCTCCAAGCCGCAGGCGCTGAAGCTGGGC
GTTAACAAATCCCTGAGCATGGTCAGCATACACGGTGTGATGTACAAGAA
GATATCGAAGAACAAAATAACCAAGCTGGATGCCAGTTCCTCCGCTAGGG
TAGCCAAATCGGAGAGTCCCAGGACCTTGCAGCGTACCTTGTCCGGCAGA
ACGCTCTTCGTCAGCGGCAATAAGTTCATTTTAGATCCTTCCGGCTGCCG
CCTGACCAGAGTTTCAACCTCATCAACTGGTGCTACCCAGAGTAGCGTAA
ATCGTAGCATCCTGAGGCGCATCGATATCGGCGGCCTTACCTACGTTGCT
TCGCCAAAGGCACTGAATGTCTTTGTACGCACCAGTAATCACGTGTCGCG
AGCCCATTTAATCACCGCCAAACAGAGAAGCCTGACGTTGCTCAACAAAT
CGTTGGTGAAGACCAATGTGCCTTGTGCCATCTTCCAGAAGCTGGGCAAG
TGCGTTGCCCATAGTCGTGGCAAGTGCCGCAAGCTGCACGACAAGCGGCA
GGTTGCCATCTGTGTCAGCTTTCTGCGCGGGGAGTGCACCAAACCCAAAT
GCCTGCTGTCCCATAATGTCACGCTGGAGAAGATGCCCGTCTGTCGGTAC
TATTTGCGCGGCGTTTGCGTTCGCGAGGATTGCCCGTACCTACACAAGAA
GCTGAGCAGCAAGACCGAGATTTGTATTGACTTTGTGCGCGGCTACTGTC
CGTTGGCTGCCGAGTGCAACAAACGTCACGAGTTTTCCTGTCCCGAGTTG
GAGCGCAAGGGCAAGTGCGAATTACCCAGGTGCGTGTTCTGTAAGAAGTC
GCCATCAAAGCGATTGGCCAAAGTCAAGTCGCGTCCCAAACTGGGCAGTA
AACCTGTCGCCTTCACGGATACCGCGAAAGAATCGTCTACAGCGGATGAG
TTGCCCACCAGTTCACGCTACTTTGGGTCCCACAAGGAACCAGCGGAAGC
AATATTGACTAGAGATGATGTGGAACAGAAGAAACCTGAAGCGGAGGATG
AGGATCAGAAGGAAGCGGGTGCCCCTTGCCCTCGACGACGTCCTCAACTG
GGAACTCTACCCTCTTTTATTCCCTTAGGTGGCGAAGAAAAGCTATAAGG
CTATGCGAAGGCTATGGACCCAACGTTTCAGGTACAAATTAATTCGGTTA
AGTATTGTTTTAACGTTTAGTCTAAGATTTATCTTTAGTAGCTTATTTTC
AAGTTTTAATAAAATATTCAAAAAGACAAAAAAAAAAAAAAAAAAA

LD15332.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
ZC3H3-RA 2093 ZC3H3-RA 52..2081 1..2030 10150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8500950..8501721 772..1 3770 99.2 Minus
chr3L 24539361 chr3L 8500302..8500853 1322..771 2685 99.1 Minus
chr3L 24539361 chr3L 8499443..8499956 2026..1513 2480 98.8 Minus
chr3L 24539361 chr3L 8500013..8500211 1514..1316 980 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8508977..8509748 772..1 3860 100 Minus
3L 28110227 3L 8508329..8508880 1322..771 2745 99.8 Minus
3L 28110227 3L 8507466..8507983 2030..1513 2590 100 Minus
3L 28110227 3L 8508040..8508238 1514..1316 995 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8502077..8502848 772..1 3860 100 Minus
3L 28103327 3L 8501429..8501980 1322..771 2745 99.8 Minus
3L 28103327 3L 8500566..8501083 2030..1513 2590 100 Minus
3L 28103327 3L 8501140..8501338 1514..1316 995 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:17:21 has no hits.

LD15332.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:18:32 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8500950..8501721 1..772 99   Minus
chr3L 8499442..8499954 1515..2027 98 <- Minus
chr3L 8500013..8500208 1319..1514 99 <- Minus
chr3L 8500306..8500851 773..1318 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:51 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
CG6694-RA 1..1794 105..1898 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:05 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 1..1794 105..1898 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:24 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 1..1794 105..1898 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:24 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
CG6694-RA 1..1794 105..1898 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:29 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 1..1794 105..1898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:52 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
CG6694-RA 1..2026 2..2027 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:05 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 1..2026 2..2027 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:24 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 16..2042 1..2027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:24 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
CG6694-RA 1..2026 2..2027 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:29 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
ZC3H3-RA 16..2042 1..2027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:32 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8507469..8507981 1515..2027 100 <- Minus
3L 8508040..8508235 1319..1514 100 <- Minus
3L 8508333..8508878 773..1318 100 <- Minus
3L 8508977..8509748 1..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:32 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8507469..8507981 1515..2027 100 <- Minus
3L 8508040..8508235 1319..1514 100 <- Minus
3L 8508333..8508878 773..1318 100 <- Minus
3L 8508977..8509748 1..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:32 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8507469..8507981 1515..2027 100 <- Minus
3L 8508040..8508235 1319..1514 100 <- Minus
3L 8508333..8508878 773..1318 100 <- Minus
3L 8508977..8509748 1..772 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:24 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8500569..8501081 1515..2027 100 <- Minus
arm_3L 8501140..8501335 1319..1514 100 <- Minus
arm_3L 8501433..8501978 773..1318 100 <- Minus
arm_3L 8502077..8502848 1..772 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:18 Download gff for LD15332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8500569..8501081 1515..2027 100 <- Minus
3L 8501140..8501335 1319..1514 100 <- Minus
3L 8501433..8501978 773..1318 100 <- Minus
3L 8502077..8502848 1..772 100   Minus

LD15332.pep Sequence

Translation from 104 to 1897

> LD15332.pep
MLPHISADEAQPSMSRKVYINPNFQLQGQTAHQLPFQVPFQAFQAPLQPQ
PAIHINPHFLNRQRAMYDQYQREQQEQLMMQQVSASHYRLDPTIHLLATP
PPPPAKIISKVSTCLVRKPSVVASGPAVKLAASVPVPTVSSLVQPPLVSI
SKRKIVRQGALKAAPAVAALHPPPPAKRTRYKLVRSISLTCTPLVKKRRP
LREFVGQYALRRTNEAQPNRKLSSKPQALKLGVNKSLSMVSIHGVMYKKI
SKNKITKLDASSSARVAKSESPRTLQRTLSGRTLFVSGNKFILDPSGCRL
TRVSTSSTGATQSSVNRSILRRIDIGGLTYVASPKALNVFVRTSNHVSRA
HLITAKQRSLTLLNKSLVKTNVPCAIFQKLGKCVAHSRGKCRKLHDKRQV
AICVSFLRGECTKPKCLLSHNVTLEKMPVCRYYLRGVCVREDCPYLHKKL
SSKTEICIDFVRGYCPLAAECNKRHEFSCPELERKGKCELPRCVFCKKSP
SKRLAKVKSRPKLGSKPVAFTDTAKESSTADELPTSSRYFGSHKEPAEAI
LTRDDVEQKKPEAEDEDQKEAGAPCPRRRPQLGTLPSFIPLGGEEKL*

LD15332.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10163-PA 623 GF10163-PA 1..622 1..596 1911 65.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15077-PA 602 GG15077-PA 1..602 1..597 2532 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16195-PA 581 GH16195-PA 1..579 1..592 1437 55.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
ZC3H3-PA 597 CG6694-PA 1..597 1..597 3085 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13344-PA 615 GI13344-PA 129..615 106..596 1342 59 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15569-PA 608 GL15569-PA 1..608 1..595 1624 59.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19787-PA 600 GA19787-PA 1..600 1..595 1725 63.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24934-PA 596 GM24934-PA 1..596 1..597 2829 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12982-PA 597 GD12982-PA 1..597 1..597 2822 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13173-PA 581 GJ13173-PA 1..581 1..596 1567 57.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20542-PA 629 GK20542-PA 1..578 1..547 1539 57.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21301-PA 599 GE21301-PA 1..599 1..597 2411 87.2 Plus

LD15332.hyp Sequence

Translation from 104 to 1897

> LD15332.hyp
MLPHISADEAQPSMSRKVYINPNFQLQGQTAHQLPFQVPFQAFQAPLQPQ
PAIHINPHFLNRQRAMYDQYQREQQEQLMMQQVSASHYRLDPTIHLLATP
PPPPAKIISKVSTCLVRKPSVVASGPAVKLAASVPVPTVSSLVQPPLVSI
SKRKIVRQGALKAAPAVAALHPPPPAKRTRYKLVRSISLTCTPLVKKRRP
LREFVGQYALRRTNEAQPNRKLSSKPQALKLGVNKSLSMVSIHGVMYKKI
SKNKITKLDASSSARVAKSESPRTLQRTLSGRTLFVSGNKFILDPSGCRL
TRVSTSSTGATQSSVNRSILRRIDIGGLTYVASPKALNVFVRTSNHVSRA
HLITAKQRSLTLLNKSLVKTNVPCAIFQKLGKCVAHSRGKCRKLHDKRQV
AICVSFLRGECTKPKCLLSHNVTLEKMPVCRYYLRGVCVREDCPYLHKKL
SSKTEICIDFVRGYCPLAAECNKRHEFSCPELERKGKCELPRCVFCKKSP
SKRLAKVKSRPKLGSKPVAFTDTAKESSTADELPTSSRYFGSHKEPAEAI
LTRDDVEQKKPEAEDEDQKEAGAPCPRRRPQLGTLPSFIPLGGEEKL*

LD15332.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
ZC3H3-PA 597 CG6694-PA 1..597 1..597 3085 100 Plus