Clone LD15349 Report

Search the DGRC for LD15349

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:153
Well:49
Vector:pBS SK-
Associated Gene/TranscriptPih1D1-RA
Protein status:LD15349.pep: gold
Preliminary Size:1402
Sequenced Size:1207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5792 2001-01-01 Release 2 assignment
CG5792 2001-10-10 Blastp of sequenced clone
CG5792 2003-01-01 Sim4 clustering to Release 3
CG5792 2008-04-29 Release 5.5 accounting
CG5792 2008-08-15 Release 5.9 accounting
CG5792 2008-12-18 5.12 accounting

Clone Sequence Records

LD15349.complete Sequence

1207 bp (1207 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061192

> LD15349.complete
TCGAGTTGACAGCTCCATTCTGGCAAATAAAATTTGCGTTTTTCGCTCGT
CGCTCAGCGCAAAAATAGCATTTGCATTGGATTAACTCGTAACTGGCAAT
TGAAATCGTGCAGCAAAATGTCGCGTCGTTCCAATTTCATTGAGGGCAAC
GACAATTTTCGCGACCAGAACCTGCGCTTTGTGCGGAACGAGTTTGAGGA
CAATATTAACCAGTACTTTGGAGGCGCCGATCCGGAGGGCAGCGGCCCGC
AGCAGAAACCGCCGCCGCGAGACTCGCTGATTGTCCAGCCGACCGCAGGA
ATCTGCGTGAAAAGCTTCAAGACAAACAGTGATGAAAAGTTCTTCATTAA
CGTGTGCCAGGCAGCGGAAGTTCCAGCACCGCAGGATGTCACCGAGGAGG
AACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCC
ATGAGCATCTCAGATCCCAGATTCACGAAGGATCGTTCCGATAAGACCGT
CGATGTCTGCGACATCGCTATCAACCCAAAGTTTCTGGTAAAGATCCAGA
AGTCGCAGCTCTTCAAGAACTTCTTTATGCAAATTGTGATTGAGGCGATG
AGCGAAAAGTATAATGTGCAGCTCAACATGGAAAAGACCATTATTCTGAA
CAATCGCAAGTTCATCGGCACTTTGGTCACTCATCGTGTGCGCAACGAAG
ATATGAAAAGGGCCCAGTCTACGTCCGGCATTCCTGCTGCTCTTAACAGC
CGGGATGGTGGGGCTGTGGCACCGGAAAATTCCGGAAAACTGGTGCAGGA
GATCGACGAGAAGGATGCTGCTGCCATAAGGAAGAGTCGACAGTCTGCAG
GCGGCGGTTTTCTGGATATACAGTACAAACTTCGTGGTCGAGTTCGTGAC
GAGTCCGTTGACGAAATCCATGCTGAGATCTACTTGCCCAACTACGTTTC
TTCGCAGGAGTTCAGTCTCCTTGTCGGCGAGGATCGTATCGTGGTGGAAA
CCCGCAAGTATGGCTATGTGTTCAACAAATTCGTCAACTACCGTCTGCAG
CAGGATCGTGCACAAGCTCTGTTCGATAAGACCACCAAGATGCTTCATGT
TCGCATTCCAGTGTTCAGTAACTAAAAAGGCACATAAATGAATAATGCCC
GCTGTGATAATGTTAATAAAGGCGCAAATTTTACAATTTAAAAAAAAAAA
AAAAAAA

LD15349.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5792-RA 1367 CG5792-RA 137..1326 1..1190 5950 100 Plus
CG5792.a 4133 CG5792.a 3710..4133 297..720 2120 100 Plus
CG5792.a 4133 CG5792.a 120..417 1..298 1490 100 Plus
CG5792-RD 3745 CG5792-RD 137..434 1..298 1490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12712354..12713004 947..297 3255 100 Minus
chr2L 23010047 chr2L 12720370..12720555 186..1 870 97.8 Minus
chr2L 23010047 chr2L 12712149..12712292 1089..946 720 100 Minus
chr2L 23010047 chr2L 12720171..12720288 299..182 530 96.6 Minus
chr2L 23010047 chr2L 12711982..12712083 1189..1088 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12713648..12714298 947..297 3255 100 Minus
2L 23513712 2L 12721653..12721838 186..1 930 100 Minus
2L 23513712 2L 12713443..12713586 1089..946 720 100 Minus
2L 23513712 2L 12721450..12721567 299..182 575 99.2 Minus
2L 23513712 2L 12713275..12713377 1190..1088 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12713648..12714298 947..297 3255 100 Minus
2L 23513712 2L 12721653..12721838 186..1 930 100 Minus
2L 23513712 2L 12713443..12713586 1089..946 720 100 Minus
2L 23513712 2L 12721450..12721567 299..182 575 99.1 Minus
2L 23513712 2L 12713275..12713377 1190..1088 515 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:33:23 has no hits.

LD15349.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:34:13 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12711982..12712081 1090..1189 100 <- Minus
chr2L 12712149..12712292 946..1089 100 <- Minus
chr2L 12712356..12713002 299..945 100 <- Minus
chr2L 12720172..12720283 187..298 97 <- Minus
chr2L 12720370..12720555 1..186 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:53 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 1..1008 118..1125 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:37 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 1..1008 118..1125 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:28 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 1..1008 118..1125 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:21 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 1..1008 118..1125 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:33:16 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
Pih1D1-RA 1..1008 118..1125 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:12 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 120..1308 1..1189 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:37 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 120..1308 1..1189 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:28 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 6..1194 1..1189 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:22 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 120..1308 1..1189 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:33:16 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
Pih1D1-RA 6..1194 1..1189 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:13 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12713443..12713586 946..1089 100 <- Minus
2L 12713276..12713375 1090..1189 100 <- Minus
2L 12713650..12714296 299..945 100 <- Minus
2L 12721451..12721562 187..298 100 <- Minus
2L 12721653..12721838 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:13 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12713443..12713586 946..1089 100 <- Minus
2L 12713276..12713375 1090..1189 100 <- Minus
2L 12713650..12714296 299..945 100 <- Minus
2L 12721451..12721562 187..298 100 <- Minus
2L 12721653..12721838 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:13 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12713443..12713586 946..1089 100 <- Minus
2L 12713276..12713375 1090..1189 100 <- Minus
2L 12713650..12714296 299..945 100 <- Minus
2L 12721451..12721562 187..298 100 <- Minus
2L 12721653..12721838 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:28 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12713276..12713375 1090..1189 100 <- Minus
arm_2L 12713443..12713586 946..1089 100 <- Minus
arm_2L 12713650..12714296 299..945 100 <- Minus
arm_2L 12721451..12721562 187..298 100 <- Minus
arm_2L 12721653..12721838 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:12 Download gff for LD15349.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12713650..12714296 299..945 100 <- Minus
2L 12721451..12721562 187..298 100 <- Minus
2L 12721653..12721838 1..186 100   Minus
2L 12713276..12713375 1090..1189 100 <- Minus
2L 12713443..12713586 946..1089 100 <- Minus

LD15349.pep Sequence

Translation from 117 to 1124

> LD15349.pep
MSRRSNFIEGNDNFRDQNLRFVRNEFEDNINQYFGGADPEGSGPQQKPPP
RDSLIVQPTAGICVKSFKTNSDEKFFINVCQAAEVPAPQDVTEEELIGIL
ESTTPGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFK
NFFMQIVIEAMSEKYNVQLNMEKTIILNNRKFIGTLVTHRVRNEDMKRAQ
STSGIPAALNSRDGGAVAPENSGKLVQEIDEKDAAAIRKSRQSAGGGFLD
IQYKLRGRVRDESVDEIHAEIYLPNYVSSQEFSLLVGEDRIVVETRKYGY
VFNKFVNYRLQQDRAQALFDKTTKMLHVRIPVFSN*

LD15349.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15655-PA 1306 GF15655-PA 1058..1306 80..335 944 73.4 Plus
Dana\GF15655-PA 1306 GF15655-PA 1..81 1..79 247 65.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10239-PA 1355 GG10239-PA 1082..1355 60..335 1147 80.1 Plus
Dere\GG10239-PA 1355 GG10239-PA 1..61 1..61 311 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13678-PA 766 GH13678-PA 492..766 61..335 924 65.8 Plus
Dgri\GH13678-PA 766 GH13678-PA 1..66 1..61 226 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-PA 335 CG5792-PA 1..335 1..335 1717 100 Plus
Pih1D1-PD 1094 CG5792-PD 1..60 1..60 323 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17105-PA 344 GI17105-PA 1..339 1..335 1143 64.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19732-PA 1610 GL19732-PA 1346..1609 62..334 1010 72.3 Plus
Dper\GL19732-PA 1610 GL19732-PA 1..60 1..59 229 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19133-PA 1557 GA19133-PA 1293..1556 62..334 1013 73 Plus
Dpse\GA19133-PA 1557 GA19133-PA 1..60 1..59 229 71.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25987-PA 1074 GM25987-PA 771..1074 37..335 1364 87.9 Plus
Dsec\GM13171-PA 161 GM13171-PA 1..161 145..335 645 70.2 Plus
Dsec\GM17423-PA 145 GM17423-PA 1..145 161..335 575 69.7 Plus
Dsec\GM19628-PA 135 GM19628-PA 1..135 171..335 518 66.7 Plus
Dsec\GM25987-PA 1074 GM25987-PA 1..61 1..61 317 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22098-PA 1353 GD22098-PA 1075..1353 55..335 1311 90 Plus
Dsim\GD22098-PA 1353 GD22098-PA 1..61 1..61 322 96.7 Plus
Dsim\GD22060-PA 59 GD22060-PA 1..57 112..165 215 75.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16144-PA 1127 GJ16144-PA 861..1126 60..333 939 66.5 Plus
Dvir\GJ16144-PA 1127 GJ16144-PA 1..61 1..61 240 77.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24620-PA 610 GK24620-PA 343..609 59..334 874 63.1 Plus
Dwil\GK24620-PA 610 GK24620-PA 1..65 1..61 225 67.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12055-PA 1196 GE12055-PA 930..1196 67..335 1169 83.6 Plus
Dyak\GE12055-PA 1196 GE12055-PA 1..61 1..61 317 95.1 Plus

LD15349.hyp Sequence

Translation from 117 to 1124

> LD15349.hyp
MSRRSNFIEGNDNFRDQNLRFVRNEFEDNINQYFGGADPEGSGPQQKPPP
RDSLIVQPTAGICVKSFKTNSDEKFFINVCQAAEVPAPQDVTEEELIGIL
ESTTPGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFK
NFFMQIVIEAMSEKYNVQLNMEKTIILNNRKFIGTLVTHRVRNEDMKRAQ
STSGIPAALNSRDGGAVAPENSGKLVQEIDEKDAAAIRKSRQSAGGGFLD
IQYKLRGRVRDESVDEIHAEIYLPNYVSSQEFSLLVGEDRIVVETRKYGY
VFNKFVNYRLQQDRAQALFDKTTKMLHVRIPVFSN*

LD15349.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-PA 335 CG5792-PA 1..335 1..335 1717 100 Plus
Pih1D1-PD 1094 CG5792-PD 1..60 1..60 323 100 Plus