Clone LD15362 Report

Search the DGRC for LD15362

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:153
Well:62
Vector:pBS SK-
Associated Gene/TranscriptCG8316-RA
Protein status:LD15362.pep: gold
Preliminary Size:2027
Sequenced Size:1974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8316 2001-01-01 Release 2 assignment
CG8316 2001-10-10 Blastp of sequenced clone
CG8316 2003-01-01 Sim4 clustering to Release 3
CG8316 2008-04-29 Release 5.5 accounting
CG8316 2008-08-15 Release 5.9 accounting
CG8316 2008-12-18 5.12 accounting

Clone Sequence Records

LD15362.complete Sequence

1974 bp (1974 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061193

> LD15362.complete
AAACATTGAACGGACAAAATATGGAAAAATATCCACTTGTCAAAGAATTT
ATGGGGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGA
ACTCAAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGC
GTTTGGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTG
GTAGTGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACA
GGACTGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCG
GGCTGCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTC
CAGCGCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCA
GAACACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGC
AAGCCTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAA
CTGGACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGA
TAAGCTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAA
ACGAATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTC
ACTAAGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCAT
TTCACCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGA
ATATCAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATC
ACTACTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAA
GGAGGTCGAGTCTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGCGTT
TTTCTCCCTATCCAGAGATAAGCCATATCGAAGAGGAGAAATTTGAGAAG
ACCGATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATT
AGAAGAGGACAGTGACGAAATGGAGGCCACAGACGAAGATTTTGAGGAAA
TATCAGAAGAAGAATTCGAAATGGCGCTGAAAGATGAAGGATTTGAGCAG
GAGGTAAAAGTAGAAAAGTCAGAAGAGGTTTTGCATCTAGAACAGGATAG
ATATGATGAGAAATCTGGCTCAGAAGTCGAGGAATCCGTATCGGATGACA
AGGAATCCGGAGGGGAGGCTTCAGGAGAGGAGGAGCCGGCTGATGCGGCC
AAACAAGTAAAAATCGGCGAAAACCCGAAGACTGATGAGCAGCTATCCAA
TGAAATTTCCGATAAACCACAAATAATTAGAGTCGACACTCTCTCTCCCT
TCAAAAACATATCTTCCTGGGCCAGCGACGATATACCCAGCACCTCCAAG
GGCACTCTTAATCGTTTTACTGCAACCCAGTTTATGAACTATGGTAGCAA
TCGCGATGAAAACGAGGCGCCGCCTTGCAAGCGACTAAAATTGGAGGAGG
AGGAGTTCCCAATGAGCCAACCAATGCCGGATTACTTTAAGCATCCGTCG
TCCACATTCAACAACTTTGATGATCAATCACTTCGATTCAGCTCGCCCCA
CAACAATTTTGACGATGATTACCTGCTGAACTTCAGCGATGATAATGATG
TTACACCTACTGCCGCCTCGGCGTACATACTTTAAATTGTTAACGTATTT
TGGTCAAAAATTAATGTATGTTCTTTATAAGAACGGACAATTAATTAATA
TCCAGATACTTATTCATTCATTGCCATTTGCAATCAAAAAAAATTTCACT
TCAGCTAAATTATTTGTAGCTTTATAATGAAATTAATTTGCGTACATAAT
ATGCATATGTACATTTAAATCATACGTATTCAGTTCGAAAGTGCCGTTTC
AGACTTATTCTTCATTTTGTCGTTGCTTATAAACTAATAAAACAATAAAT
TAAGACAAAAAAAAAAAAAAAAAA

LD15362.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 2032 CG8316-RA 70..2028 1..1959 9795 100 Plus
CG8316.a 1997 CG8316.a 42..1994 1..1959 9680 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17519116..17520456 1956..616 6705 100 Minus
chrX 22417052 chrX 17520852..17521142 429..139 1455 100 Minus
chrX 22417052 chrX 17520507..17520695 617..429 945 100 Minus
chrX 22417052 chrX 17521207..17521344 138..1 690 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17629788..17631131 1959..616 6720 100 Minus
X 23542271 X 17631527..17631817 429..139 1455 100 Minus
X 23542271 X 17631182..17631370 617..429 945 100 Minus
X 23542271 X 17631882..17632019 138..1 690 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17637886..17639229 1959..616 6720 100 Minus
X 23527363 X 17639625..17639915 429..139 1455 100 Minus
X 23527363 X 17639280..17639468 617..429 945 100 Minus
X 23527363 X 17639980..17640117 138..1 690 100 Minus
Blast to na_te.dros performed 2019-03-16 09:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1076..1139 47..110 140 68.8 Plus
Juan 4236 Juan JUAN 4236bp 265..299 1629..1662 118 85.7 Plus
TART-A 13424 TART-A 13424bp 5820..5869 578..627 115 70 Plus

LD15362.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:13 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17520507..17520694 430..617 100 <- Minus
chrX 17520852..17521142 139..429 100 <- Minus
chrX 17521207..17521344 1..138 100   Minus
chrX 17519116..17520454 618..1956 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:49:56 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 21..1685 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:43 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 21..1685 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:00:11 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 21..1685 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:45 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 21..1685 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:59:59 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 21..1685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:56 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 2..1957 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:43 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 2..1957 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:00:11 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 29..1984 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:45 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 2..1957 1..1956 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:59:59 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 29..1984 1..1956 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:13 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
X 17629791..17631129 618..1956 100 <- Minus
X 17631182..17631369 430..617 100 <- Minus
X 17631527..17631817 139..429 100 <- Minus
X 17631882..17632019 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:13 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
X 17629791..17631129 618..1956 100 <- Minus
X 17631182..17631369 430..617 100 <- Minus
X 17631527..17631817 139..429 100 <- Minus
X 17631882..17632019 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:13 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
X 17629791..17631129 618..1956 100 <- Minus
X 17631182..17631369 430..617 100 <- Minus
X 17631527..17631817 139..429 100 <- Minus
X 17631882..17632019 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:00:11 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17525215..17525402 430..617 100 <- Minus
arm_X 17523824..17525162 618..1956 100 <- Minus
arm_X 17525560..17525850 139..429 100 <- Minus
arm_X 17525915..17526052 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:51 Download gff for LD15362.complete
Subject Subject Range Query Range Percent Splice Strand
X 17637889..17639227 618..1956 100 <- Minus
X 17639280..17639467 430..617 100 <- Minus
X 17639625..17639915 139..429 100 <- Minus
X 17639980..17640117 1..138 100   Minus

LD15362.hyp Sequence

Translation from 2 to 1684

> LD15362.hyp
TLNGQNMEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPR
LEQVLFDLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAG
LQDILYYTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQ
ALKKEADKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLIN
ELKEELQKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKN
IRPDDNKSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRF
SPYPEISHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEI
SEEEFEMALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDK
ESGGEASGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPF
KNISSWASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEE
EFPMSQPMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDV
TPTAASAYIL*

LD15362.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 554 CG8316-PA 1..554 7..560 2827 100 Plus
CG8316-PB 552 CG8316-PB 1..552 7..560 2798 99.5 Plus

LD15362.pep Sequence

Translation from 20 to 1684

> LD15362.pep
MEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPRLEQVLF
DLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAGLQDILY
YTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQALKKEA
DKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLINELKEEL
QKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKNIRPDDN
KSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRFSPYPEI
SHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEISEEEFE
MALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDKESGGEA
SGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPFKNISSW
ASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEEEFPMSQ
PMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDVTPTAAS
AYIL*

LD15362.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18173-PA 565 GG18173-PA 1..565 1..554 1711 62.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12960-PA 441 GH12960-PA 28..299 22..298 190 26.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
corolla-PA 554 CG8316-PA 1..554 1..554 2827 100 Plus
corolla-PB 552 CG8316-PB 1..552 1..554 2798 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14631-PA 235 GI14631-PA 30..217 87..281 193 34 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20392-PA 478 GL20392-PA 1..294 1..298 236 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29148-PA 478 GA29148-PA 1..294 1..298 224 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13305-PA 536 GM13305-PA 1..536 21..554 2326 84.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17351-PA 536 GD17351-PA 1..536 21..554 2342 85.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19282-PA 432 GJ19282-PA 3..322 1..339 246 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15583-PA 576 GE15583-PA 1..573 1..550 1676 65.1 Plus