Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD15404.complete Sequence
4579 bp (4579 high quality bases) assembled on 2001-09-19
GenBank Submission: AY059450.1
> LD15404.complete
GACGTTTCCAGAGGCGTTCGTCGGATGAACACGGGAAAACACGGGATAAA
CTCGGGAAGGAATTTACCATTTCGGAACTCGGCTTTTCGGCCTTTCGGTG
CGCGCGTGCTTGTTTGTGTGTGTCTCGATATTATTGTTGCTGCGCTGCGT
CGGTGTGTGTGTGCATTTGAGCCACGGAGAAATTGTTAACAAATACAAAT
AAAGTAAAAGAAAACGAAAAAAAAAAAGAAATAAACCGGTTCCTTATTTT
CTGCTTCAGCTTCTTCTTCTCTTCGTCGCCTGCAATTGCCTTTTCGTCAT
TCGTAATAACCAAAATCGAATTCGTTTCGCCAGCGCAATTTTAATTTCTT
TTCGGTTTTTGACCACCCGTTCTTCGGTGCGAAAGTAATAACAACCAAAA
CAAGGCATAAACTACATGTAGCATTGCAAAATTAACCAATTTTTTTTACT
GTGCCCCAAAACGAATCCGAAAAATTCCAACGAATCAGTGAGTGCAAGAA
ATCAAGGAGATAAAGTTGCGAATTAAAATCCAGTGCCAAAAAGTGAGAGA
AATACGAGAAACAAAACAAAAGTTGCAAATTTACCGAAAAATTGAAACAG
CAGAACACACACACACACGGACAAAAAAAAGGAGGAAGAAAGCATAAATT
TTGTAACTTGGGGGCATCTGGTGGATGCACAGAGTCCAGAGTTTCGGGAC
TGCAGGACCAGGTGGAAAAACAAAAGTAGAAGGTCGGTGTAATTGAACGG
CAACATCGGCGAGCAGAAGAACAACAACTGGAGTGCGTAAAACATAAACA
GACAGTTTTTAAAGCGCCCCTGTTCACAGAATTCTACTCGTTAACGGAAT
CCGCGAAATACTTGCTAAAGGGGGAGTTTCAATAGAGATTCCAGAAGGTT
GGAGAGCAACAAGCGTTACTGGGAAACTTCTTCAAAAATTTCGATGATGC
TCGACTTCTCTAGCTGCTAAATACGCCGAATTTCTCACCGAGAAAGCTTA
ACAGACCGAACGACTCCGTACGAATTTGATATTGAAACCACAATGTATCC
GGCCAGCGGCAGTGGAGGAGGCAGTGCAGCGACCGCTGCTAAGTTCCAGA
ATCGCTGCGGATCGCCGCAGTTTGCCAGCGACTATCCGCATCCACATCCG
CACCAGCATCCGCACCAGACGACATCGGTGGCGGTGCACAGTGCCCCGCC
CGGAGTGAGTGGTGGCTCCATAGCCAGCGGTGGGTCCATGTCCATGCGTC
ACGGCCAGCGGGTGGTGGCCTCAGCCCATCAGCATCCCAGTCAGATGACC
CTGAACCACGGCGGTATGGGCCACAACCACAACCACGGCATGGGCATGGC
CATGGGAATGGGTCACAATCATGGACATGCAGCGGCCACCTTGGGCCATC
CGCACTCGCATTCGCACAACAACAGCAGCGGCAGCAGCAGCCACGGACAT
GTGGGCTCGCATCTGATCTTCCCCGACGACATGGACAGCATCGAGTTCTG
CATGCCGGCGGCGCCCTCCTCCTCGTCCGCCTCCTCGCAGAACGGTCTCG
GCGACCAGTTGCTCTTGGGCAGCAGTCACGGCGAGGCGTTCACGGAGCGC
CGAAGGAGGGGTCACAGCCGGCGCAGCAATCACAAGATGGACGTGGAACA
GCAGGTTAAGTGGTCTCGCAAGAACATCGCCGCCACCATGGAACGCTTCG
AGCCCACGCCCAACACACAGTCCTCGTCGTCCACTTCATCGCTGGACTAT
GGATTTGCAGCCGGCGTGATGACACCCAGTGGCAGCAGTGCTACGGCCTC
GCATGGCGGTGGCGCCTCCAATCCCTCACTGCACGTGGCCTTCAACGGAG
GCGGCGGAGCAGTGGGCGGTGGCTCATCCGCGGCATCAGGCGCTAGTGGT
GTCAGCGGCTCGGGAGCAGCTGCAGCGGCGGCGCCCTTCAACCATGTCTA
TTCGTATGCTTACTACGAACCGGGGGCAGCCAAGTGTCACACCAACGTGC
CTGCCGCCCAAGGAGCTGGTCCTGGACAGGGTCAGGCCCACCAGGTCCAG
TCGAAGAGCCCGCCGCGCAACTCGATACGCGCCCTGCTGGCCAAGAGCTT
CCGCTCGAAGAGCAGCACCAACCATGGCGGACAGTCCACATCCAGTTCGC
CGAGTGCCGAGGAGCGGGATCGCCACACATACACCACTCGCTACGGCACC
ACCGAGAACCTGTACGAGGAGGTCAGCGATCAGAAGATTCGCAAGGTGCT
GTCCGACAACCGGATCGCTAGTGGCTCCAGTGTGGGCAATGTTAAGGAGG
AGCAGCGGCGCGTACAGCACAACCATTTTAGGGTGCTCGACGAGCTAAAT
CTCTCGCTGGAGGCCCTAATAATGCCGCCGACACCGCCGGACGTCAGTCC
CAGTCACGCCATGGGCGCCGATGAGCCAAGCACCTCGATGTCCGCTGGTG
CAGTGGGTGGATCGGCGGTGTCCAGCGTGGTGGCGGGACCAACGAAGACC
GCCCAGAGACCCAGACGCGGCGGCCTCCTGGGCGGTGCGGCTGGTGCAGG
GGGCACCTCGAACTCGAGCTCCGCCTCGCACGCCAGCCTGGAGAACCTAT
CGAGCACCCTGAACAGCATGGAGCTCAAGGATCATGGCCACAGTAGCTGC
ATTAATCCGGAGTTCGATGAGGGCGACCTTGACTCCGGCTTCAGTGGCAG
CGGCAGCAGCAGCGGCGCCAGCTACAACGAGAGTCTGCGGTACTACAAGT
CCGCCACGCCCACCGGACCGCTGCACCACCATCACAACCACCAGCAGCAA
CAGGCGATGCACCATCACAGCCTGAACAACAACACGTTGCCGCACAACCT
GCGCAGCTGTCGATCCTCCACGGCCTCGGGCACTTCCACATCGAAAAGCA
GCATGGCCAGCTGCAGCGAGGATCAGGGCATTGGCATGACCTTGGCTGTG
GGCGGCGGCGGCGGTGGTGGTGGTGGTGTTGGTGTTGGCGGCATGATGAC
GCCCATGCACGAGGGATCCGGCGTCGTGGGCGCCGGTTCCTTGTCGCCCT
TCAACTATCCACGCCGCTGCTCGGCGGACCAGCAGCGCGCTTCGGGCAGA
TCGATGGCCTCCGCCGTGGGCGTTGGACCCGGTGTGGGCGTGGCCGTTGG
CGGCATGGGCGGCGGCAGCATGAGCATGAGCAGCAGCAGCAACGTGGCCC
TGTCCACGGGCGCGAAACCCAAGAAGAACTTCTGGACCATGAAACCGTGA
TGCTACAAAAAGGCGCTGCGTCACATTTGCAAGAAATGGACTATTGTTAT
GGAATACAATACAAAGACTGCCTCATGCCATGCCATCCACTATTACCACC
AACCCAACAGCGGCAGCAGCTATAGCAACTACAGTAGCCGTCGTCACCAT
CAGCATCAGCAGCTGACGTCATCAGCGTCAACGTCATCGTCCACATCATC
ACTGCAGCCGCCCCGGAAGCGCTACTCCCTCGCCCAGGATCGTCTAAATC
CCTTCGAACTGGATATCTGCGATCCCGGAGAGATGGGCAGTAAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAAGAGGAAAATGAACAAGAGGAGCAGGA
GGAGGAAGAGGAGGAGCCAGGGAGAAGTTACTACCAGAGGAGTCAGATGA
ACCGGAGGCGCCACTACAAGTACGACGCCGTGGAGGAGTGCTGTCGTCCG
ATTTGCCAGGAGCAGCACTACGGCTCCATAGCGGATATGTTGTAAGGGGG
GAGGGGATACGAATATATGCAAAAGGGGAAACGAAAGAGGATACGGACTC
GGAATCACTTTAAAGCGAAACGCAAGGTACCTACAACAAAGTAACTAAAA
GAGAAATGCATGAAATAAGAAAAGAGCATGAAGCAAAGAGAATTAGCACA
TATATGAAGAGAAAGAAGGAGAAATCCCCTCGAATGCAGAAAATAAACGA
TTATAGCGTTTGGCGATAAACGATAGGCGATAAGCGATCATCGATATCCG
AGGAACGAGTTGCGCATGTTGAATAGATGTATACCGACGTTTTTTTTCCT
GGCGGCCGATGAACATTTTAAACTAATCGTTACTAAGCACAGAATTGATA
AATATATATATTCAAAATATATGTATTATTAACCATCTGGCAGATCTGGC
ACCGCTAATTAACTGTATGTTAGGCATATATCCATATAGAATATATGTAA
CCGCACTCACCACACGCAAACACAAGCACACACAACCACATACATATATA
TAAAGATATATATATATATTTATTCATGTACATACGAACTATGTTAAAGC
CAATTTTTTTTTATTGCATCCGACTAGAAATACGTGAGCGCGATAATTTT
TTTTGTGGATGAACGTGGAGATTAGATCTAGAAGATTGCACCACCATGTT
GTCTGCGCGTAAAGCAAACATGATCATTAATTATATATAAATCTAAATAT
ATACGATTTTTTTTTTATTATTTATAACCTAGCAATGCTTGTACATAGAG
TAAAGATTGTGGATTATAACTATACGAATATTAATATTAATAAAAAAGGA
ATATTTAATAAAAAAAAAAAAAAAAAAAA
LD15404.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32541-RA | 4559 | CG32541-RA | 1..4559 | 1..4559 | 22795 | 100 | Plus |
CG42506-RA | 4559 | CG42506-RA | 1..4559 | 1..4559 | 22795 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 18900714..18902364 | 1652..3302 | 8255 | 100 | Plus |
chrX | 22417052 | chrX | 18914594..18915852 | 3301..4559 | 6295 | 100 | Plus |
chrX | 22417052 | chrX | 18899937..18900650 | 943..1656 | 3570 | 100 | Plus |
chrX | 22417052 | chrX | 18819438..18820079 | 1..642 | 3210 | 100 | Plus |
chrX | 22417052 | chrX | 18825664..18825828 | 641..805 | 825 | 100 | Plus |
chrX | 22417052 | chrX | 18876192..18876276 | 803..887 | 410 | 98.8 | Plus |
chrX | 22417052 | chrX | 18893546..18893603 | 886..943 | 290 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19011750..19013400 | 1652..3302 | 8255 | 100 | Plus |
X | 23542271 | X | 19025614..19026876 | 3301..4563 | 6315 | 100 | Plus |
X | 23542271 | X | 19010973..19011686 | 943..1656 | 3570 | 100 | Plus |
X | 23542271 | X | 18930359..18931000 | 1..642 | 3210 | 100 | Plus |
X | 23542271 | X | 18936605..18936769 | 641..805 | 825 | 100 | Plus |
X | 23542271 | X | 18987173..18987257 | 803..887 | 425 | 100 | Plus |
X | 23542271 | X | 19004585..19004642 | 886..943 | 290 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 19019848..19021498 | 1652..3302 | 8255 | 100 | Plus |
X | 23527363 | X | 19033712..19034974 | 3301..4563 | 6315 | 100 | Plus |
X | 23527363 | X | 19019071..19019784 | 943..1656 | 3570 | 100 | Plus |
X | 23527363 | X | 18938457..18939098 | 1..642 | 3210 | 100 | Plus |
X | 23527363 | X | 18944703..18944867 | 641..805 | 825 | 100 | Plus |
X | 23527363 | X | 18995271..18995355 | 803..887 | 425 | 100 | Plus |
X | 23527363 | X | 19012683..19012740 | 886..943 | 290 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 13:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2535 | 2697..2914 | 166 | 57.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6967..7100 | 4416..4546 | 157 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2504 | 2697..2859 | 151 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6916 | 2767..2919 | 151 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2911 | 3163..3451 | 149 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2476 | 2698..2834 | 146 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6879 | 2682..2834 | 146 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6931 | 2698..2919 | 144 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6897 | 2682..2834 | 139 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6861 | 2775..2925 | 137 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2401 | 2767..2834 | 135 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6823 | 2767..2859 | 134 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1148 | 1397..1444 | 134 | 77.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 1396..1446 | 131 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2421 | 1379..1444 | 129 | 70.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1151 | 2751..2848 | 128 | 64 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6013..6093 | 1360..1441 | 128 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1591 | 2754..2848 | 127 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1585 | 2747..2817 | 125 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2612..2679 | 2767..2834 | 124 | 64.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7468..7549 | 1360..1442 | 124 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 2773..2834 | 123 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 2692..2817 | 123 | 60.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1154 | 2726..2833 | 122 | 61.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2640 | 3160..3461 | 121 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2904 | 3160..3244 | 120 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2475..2514 | 3154..3193 | 119 | 77.5 | Plus |
TART-A | 13424 | TART-A 13424bp | 904..1026 | 1404..1523 | 119 | 61.6 | Plus |
TART-A | 13424 | TART-A 13424bp | 12082..12204 | 1404..1523 | 119 | 61.6 | Plus |
LD15404.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:34:35 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 18819438..18820079 | 1..642 | 100 | -> | Plus |
chrX | 18825666..18825828 | 643..805 | 100 | -> | Plus |
chrX | 18876195..18876276 | 806..887 | 98 | -> | Plus |
chrX | 18893548..18893603 | 888..943 | 100 | -> | Plus |
chrX | 18899938..18900648 | 944..1654 | 95 | -> | Plus |
chrX | 18900717..18902363 | 1655..3301 | 97 | -> | Plus |
chrX | 18914595..18914835 | 3302..3542 | 100 | == | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:48 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..2208 | 1043..3250 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:20 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..2208 | 1043..3250 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:04:03 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43759-RB | 1..2703 | 1043..3745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:57 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..2208 | 1043..3250 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:33:04 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43759-RB | 1..2703 | 1043..3745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:48 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..4559 | 1..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-13 11:06:21 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..4559 | 1..4559 | 100 | | Plus |
CG42506-RA | 1..4559 | 1..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-13 11:06:21 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..4559 | 1..4559 | 100 | | Plus |
CG42506-RA | 1..4559 | 1..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:04:03 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43759-RA | 25..4583 | 1..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:58 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32541-RA | 1..4559 | 1..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:33:04 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43759-RA | 25..4583 | 1..4559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:35 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18930359..18931000 | 1..642 | 100 | -> | Plus |
X | 18936607..18936769 | 643..805 | 100 | -> | Plus |
X | 18987176..18987257 | 806..887 | 100 | -> | Plus |
X | 19004587..19004642 | 888..943 | 100 | -> | Plus |
X | 19010974..19011684 | 944..1654 | 100 | -> | Plus |
X | 19011753..19013399 | 1655..3301 | 100 | -> | Plus |
X | 19025615..19026872 | 3302..4559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:35 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18930359..18931000 | 1..642 | 100 | -> | Plus |
X | 18936607..18936769 | 643..805 | 100 | -> | Plus |
X | 18987176..18987257 | 806..887 | 100 | -> | Plus |
X | 19004587..19004642 | 888..943 | 100 | -> | Plus |
X | 19010974..19011684 | 944..1654 | 100 | -> | Plus |
X | 19011753..19013399 | 1655..3301 | 100 | -> | Plus |
X | 19025615..19026872 | 3302..4559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:35 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18930359..18931000 | 1..642 | 100 | -> | Plus |
X | 18936607..18936769 | 643..805 | 100 | -> | Plus |
X | 18987176..18987257 | 806..887 | 100 | -> | Plus |
X | 19004587..19004642 | 888..943 | 100 | -> | Plus |
X | 19010974..19011684 | 944..1654 | 100 | -> | Plus |
X | 19011753..19013399 | 1655..3301 | 100 | -> | Plus |
X | 19025615..19026872 | 3302..4559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:04:03 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18824392..18825033 | 1..642 | 100 | -> | Plus |
arm_X | 18830640..18830802 | 643..805 | 100 | -> | Plus |
arm_X | 18881209..18881290 | 806..887 | 100 | -> | Plus |
arm_X | 18898620..18898675 | 888..943 | 100 | -> | Plus |
arm_X | 18905007..18905717 | 944..1654 | 100 | -> | Plus |
arm_X | 18905786..18907432 | 1655..3301 | 100 | -> | Plus |
arm_X | 18919648..18920905 | 3302..4559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:54 Download gff for
LD15404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18938457..18939098 | 1..642 | 100 | -> | Plus |
X | 18944705..18944867 | 643..805 | 100 | -> | Plus |
X | 18995274..18995355 | 806..887 | 100 | -> | Plus |
X | 19012685..19012740 | 888..943 | 100 | -> | Plus |
X | 19019072..19019782 | 944..1654 | 100 | -> | Plus |
X | 19019851..19021497 | 1655..3301 | 100 | -> | Plus |
X | 19033713..19034970 | 3302..4559 | 100 | | Plus |
LD15404.pep Sequence
Translation from 1042 to 3249
> LD15404.pep
MYPASGSGGGSAATAAKFQNRCGSPQFASDYPHPHPHQHPHQTTSVAVHS
APPGVSGGSIASGGSMSMRHGQRVVASAHQHPSQMTLNHGGMGHNHNHGM
GMAMGMGHNHGHAAATLGHPHSHSHNNSSGSSSHGHVGSHLIFPDDMDSI
EFCMPAAPSSSSASSQNGLGDQLLLGSSHGEAFTERRRRGHSRRSNHKMD
VEQQVKWSRKNIAATMERFEPTPNTQSSSSTSSLDYGFAAGVMTPSGSSA
TASHGGGASNPSLHVAFNGGGGAVGGGSSAASGASGVSGSGAAAAAAPFN
HVYSYAYYEPGAAKCHTNVPAAQGAGPGQGQAHQVQSKSPPRNSIRALLA
KSFRSKSSTNHGGQSTSSSPSAEERDRHTYTTRYGTTENLYEEVSDQKIR
KVLSDNRIASGSSVGNVKEEQRRVQHNHFRVLDELNLSLEALIMPPTPPD
VSPSHAMGADEPSTSMSAGAVGGSAVSSVVAGPTKTAQRPRRGGLLGGAA
GAGGTSNSSSASHASLENLSSTLNSMELKDHGHSSCINPEFDEGDLDSGF
SGSGSSSGASYNESLRYYKSATPTGPLHHHHNHQQQQAMHHHSLNNNTLP
HNLRSCRSSTASGTSTSKSSMASCSEDQGIGMTLAVGGGGGGGGGVGVGG
MMTPMHEGSGVVGAGSLSPFNYPRRCSADQQRASGRSMASAVGVGPGVGV
AVGGMGGGSMSMSSSSNVALSTGAKPKKNFWTMKP*
LD15404.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19250-PA | 785 | GF19250-PA | 1..785 | 1..735 | 1802 | 65.9 | Plus |
Dana\GF22610-PA | 614 | GF22610-PA | 211..475 | 299..570 | 207 | 35.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19202-PA | 725 | GG19202-PA | 1..725 | 1..735 | 2223 | 91.9 | Plus |
Dere\GG18179-PA | 591 | GG18179-PA | 199..363 | 303..451 | 194 | 36 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH24730-PA | 502 | GH24730-PA | 132..333 | 116..320 | 429 | 63.3 | Plus |
Dgri\GH24730-PA | 502 | GH24730-PA | 346..502 | 595..735 | 246 | 52.2 | Plus |
Dgri\GH12009-PA | 739 | GH12009-PA | 313..504 | 303..453 | 217 | 32.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43759-PC | 735 | CG43759-PC | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PD | 735 | CG43759-PD | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PB | 900 | CG43759-PB | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PA | 735 | CG43759-PA | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43658-PC | 2263 | CG43658-PC | 183..529 | 300..639 | 294 | 31.7 | Plus |
Alh-PP | 1717 | CG1070-PP | 532..1099 | 5..622 | 194 | 22.7 | Plus |
stx-PB | 1122 | CG32676-PB | 272..910 | 43..619 | 182 | 23.3 | Plus |
stx-PA | 1122 | CG32676-PA | 272..910 | 43..619 | 182 | 23.3 | Plus |
na-PG | 2224 | CG1517-PG | 50..285 | 4..297 | 175 | 27.5 | Plus |
na-PF | 2233 | CG1517-PF | 50..285 | 4..297 | 175 | 27.5 | Plus |
na-PG | 2224 | CG1517-PG | 19..307 | 468..726 | 170 | 25.2 | Plus |
na-PF | 2233 | CG1517-PF | 19..307 | 468..726 | 170 | 25.2 | Plus |
Alh-PP | 1717 | CG1070-PP | 294..983 | 43..714 | 166 | 20.9 | Plus |
Alh-PD | 1323 | CG1070-PD | 241..930 | 43..714 | 166 | 20.9 | Plus |
Alh-PA | 1376 | CG1070-PA | 294..983 | 43..714 | 166 | 20.9 | Plus |
CG7300-PD | 886 | CG7300-PD | 131..833 | 10..724 | 164 | 21.3 | Plus |
CG7300-PB | 886 | CG7300-PB | 131..833 | 10..724 | 164 | 21.3 | Plus |
sbb-PE | 929 | CG5580-PE | 170..721 | 157..724 | 163 | 21.3 | Plus |
sbb-PC | 929 | CG5580-PC | 170..721 | 157..724 | 163 | 21.3 | Plus |
sbb-PF | 939 | CG5580-PF | 180..731 | 157..724 | 163 | 21.3 | Plus |
sbb-PH | 2302 | CG5580-PH | 170..721 | 157..724 | 163 | 21.3 | Plus |
sbb-PD | 2302 | CG5580-PD | 170..721 | 157..724 | 163 | 21.3 | Plus |
sbb-PG | 2312 | CG5580-PG | 180..731 | 157..724 | 163 | 21.3 | Plus |
sbb-PJ | 2330 | CG5580-PJ | 180..731 | 157..724 | 163 | 21.3 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 382..979 | 56..629 | 162 | 20.3 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 382..979 | 56..629 | 162 | 20.3 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI14886-PA | 725 | GI14886-PA | 123..725 | 134..735 | 1471 | 68.4 | Plus |
Dmoj\GI14640-PA | 671 | GI14640-PA | 284..460 | 300..445 | 194 | 33.2 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL14665-PA | 814 | GL14665-PA | 1..814 | 1..735 | 1586 | 62.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16975-PA | 825 | GA16975-PA | 1..463 | 1..460 | 1163 | 69 | Plus |
Dpse\GA16975-PA | 825 | GA16975-PA | 535..825 | 485..735 | 437 | 59.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22935-PA | 728 | GM22935-PA | 1..728 | 1..735 | 3672 | 97 | Plus |
Dsec\GM13311-PA | 572 | GM13311-PA | 181..343 | 303..449 | 203 | 38.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24866-PA | 108 | GD24866-PA | 1..108 | 621..735 | 523 | 92.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15317-PA | 821 | GJ15317-PA | 55..821 | 1..735 | 1449 | 57.8 | Plus |
Dvir\GJ19290-PA | 712 | GJ19290-PA | 304..483 | 300..451 | 219 | 36.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK25842-PA | 740 | GK25842-PA | 31..740 | 17..735 | 1420 | 56.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17765-PA | 739 | GE17765-PA | 1..739 | 1..735 | 2339 | 91.6 | Plus |
Dyak\GE15590-PA | 630 | GE15590-PA | 201..388 | 303..475 | 200 | 34 | Plus |
LD15404.hyp Sequence
Translation from 1042 to 3249
> LD15404.hyp
MYPASGSGGGSAATAAKFQNRCGSPQFASDYPHPHPHQHPHQTTSVAVHS
APPGVSGGSIASGGSMSMRHGQRVVASAHQHPSQMTLNHGGMGHNHNHGM
GMAMGMGHNHGHAAATLGHPHSHSHNNSSGSSSHGHVGSHLIFPDDMDSI
EFCMPAAPSSSSASSQNGLGDQLLLGSSHGEAFTERRRRGHSRRSNHKMD
VEQQVKWSRKNIAATMERFEPTPNTQSSSSTSSLDYGFAAGVMTPSGSSA
TASHGGGASNPSLHVAFNGGGGAVGGGSSAASGASGVSGSGAAAAAAPFN
HVYSYAYYEPGAAKCHTNVPAAQGAGPGQGQAHQVQSKSPPRNSIRALLA
KSFRSKSSTNHGGQSTSSSPSAEERDRHTYTTRYGTTENLYEEVSDQKIR
KVLSDNRIASGSSVGNVKEEQRRVQHNHFRVLDELNLSLEALIMPPTPPD
VSPSHAMGADEPSTSMSAGAVGGSAVSSVVAGPTKTAQRPRRGGLLGGAA
GAGGTSNSSSASHASLENLSSTLNSMELKDHGHSSCINPEFDEGDLDSGF
SGSGSSSGASYNESLRYYKSATPTGPLHHHHNHQQQQAMHHHSLNNNTLP
HNLRSCRSSTASGTSTSKSSMASCSEDQGIGMTLAVGGGGGGGGGVGVGG
MMTPMHEGSGVVGAGSLSPFNYPRRCSADQQRASGRSMASAVGVGPGVGV
AVGGMGGGSMSMSSSSNVALSTGAKPKKNFWTMKP*
LD15404.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43759-PC | 735 | CG43759-PC | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PD | 735 | CG43759-PD | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PB | 900 | CG43759-PB | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43759-PA | 735 | CG43759-PA | 1..735 | 1..735 | 3868 | 100 | Plus |
CG43658-PC | 2263 | CG43658-PC | 183..529 | 300..639 | 294 | 31.7 | Plus |
LD15404.pep2 Sequence
Translation from 3298 to 3744
> LD15404.pep2
MEYNTKTASCHAIHYYHQPNSGSSYSNYSSRRHHQHQQLTSSASTSSSTS
SLQPPRKRYSLAQDRLNPFELDICDPGEMGSKEEEEEEEEEKEENEQEEQ
EEEEEEPGRSYYQRSQMNRRRHYKYDAVEECCRPICQEQHYGSIADML*
LD15404.pep2 Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19251-PA | 165 | GF19251-PA | 9..165 | 2..148 | 318 | 58.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19204-PA | 167 | GG19204-PA | 29..167 | 2..148 | 474 | 85 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43759-PB | 900 | CG43759-PB | 753..900 | 1..148 | 800 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL14666-PA | 205 | GL14666-PA | 43..205 | 2..148 | 220 | 47 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23631-PA | 196 | GA23631-PA | 36..196 | 2..148 | 223 | 48.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22936-PA | 239 | GM22936-PA | 97..239 | 2..148 | 714 | 93.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17422-PA | 162 | GD17422-PA | 18..162 | 1..148 | 720 | 96 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17766-PA | 254 | GE17766-PA | 4..154 | 1..148 | 551 | 88.1 | Plus |