Clone LD15458 Report

Search the DGRC for LD15458

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:154
Well:58
Vector:pBS SK-
Associated Gene/Transcriptifc-RA
Protein status:LD15458.pep: gold
Preliminary Size:1842
Sequenced Size:1771

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9078 2001-01-01 Release 2 assignment
CG9078 2001-10-10 Blastp of sequenced clone
CG9078 2003-01-01 Sim4 clustering to Release 3
ifc 2008-04-29 Release 5.5 accounting
ifc 2008-08-15 Release 5.9 accounting
ifc 2008-12-18 5.12 accounting

Clone Sequence Records

LD15458.complete Sequence

1771 bp (1771 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061196

> LD15458.complete
TTGGATGTTTGGACAGTTTCCTTCCTCGCGCCGGTCGATAATGTTGGCCA
ACTAACACCGACCTGTAGCACGTCACCCGTAATAACCCATAACCGCAACC
AGTCCAAGCATCCAAGATGGGACAGAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGC
ATCACGACTTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGC
ATCGCTAAGGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCG
GGTTCTGTACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCG
TGAAGCGACGCCAGCGCGGCCTGGCCTCCTAAGCCATCGATGCTATTCAA
GGTTTCCTGCCATGAATGTAATCTCAGCGTTAGACCTAAAACGGCTTTTT
TATGTATATATACACCGTAGAGACATTTACAGCGGATGCAGAAGAAATAA
GGGGAACAACCACACACATAGCACCAGCTAATCTCTGTGATTAGATAAGG
GGCATTCGGACACTTGCAGCGGCTGATATGAACAATTACGTGGATATAGT
TTTTGGTATTATTGCTAGAGTGTGAGCTTAGTTAGGTTCGTTGGCCTAAC
TGAGAGGCACTTTCGAGCGCTTTAATTAATTGTTACCTCATAAATTGGAA
AGCCTGTTAAATCTAGTGTGTAATACTTGTCCTATTATACTATTGTCTTA
GTATTTTCGATACATATTTATATTGCTTTCAGATCATTTATGTGCAGACA
CGATTTGGTGTGATCAATCTTAATCCTTATCGCCGCCACCCTGGCCGATA
GCAAGCCACTAATCAAGCAACCAACTACTATTTTTGATAGACTCTTGAAA
CTGTTACCTAAGAATAAAGTCTAAATAATTTGACCGGGGTGGCTGCATGT
ACAGAATACACTATAAAATTTGTAAGCAAACTAATGAAATAAATAACAAC
ATCGTATTGTAACGACTCTGTGACCAATTAAACTTTTTGAAGCTTGCAAA
GTTAAAAAAAAAAAAAAAAAA

LD15458.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 2196 ifc-RA 75..1828 1..1754 8770 100 Plus
nc_1271.a 436 nc_1271.a 273..436 515..678 820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5986666..5987905 514..1753 6200 100 Plus
chr2L 23010047 chr2L 5985430..5985947 1..518 2575 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:02:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988855 514..1754 6205 100 Plus
2L 23513712 2L 5986379..5986896 1..518 2575 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988855 514..1754 6205 100 Plus
2L 23513712 2L 5986379..5986896 1..518 2575 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 02:01:07 has no hits.

LD15458.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:02:03 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5985430..5985943 1..514 100 -> Plus
chr2L 5986667..5987905 515..1753 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:04 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 1..966 117..1082 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:30 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 1..966 117..1082 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:27 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 1..966 117..1082 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:14 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 1..966 117..1082 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:55:15 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 1..966 117..1082 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:00 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 56..1808 1..1753 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:30 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 56..1808 1..1753 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:27 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 32..1784 1..1753 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:14 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 56..1808 1..1753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:55:15 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 32..1784 1..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:03 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986379..5986892 1..514 100 -> Plus
2L 5987616..5988854 515..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:03 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986379..5986892 1..514 100 -> Plus
2L 5987616..5988854 515..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:03 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986379..5986892 1..514 100 -> Plus
2L 5987616..5988854 515..1753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:27 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986379..5986892 1..514 100 -> Plus
arm_2L 5987616..5988854 515..1753 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:05 Download gff for LD15458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986379..5986892 1..514 100 -> Plus
2L 5987616..5988854 515..1753 100   Plus

LD15458.hyp Sequence

Translation from 116 to 1081

> LD15458.hyp
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLAS*

LD15458.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-PA 321 CG9078-PA 1..321 1..321 1742 100 Plus
ifc-PB 102 CG9078-PB 1..102 220..321 569 100 Plus

LD15458.pep Sequence

Translation from 116 to 1081

> LD15458.pep
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLAS*

LD15458.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15596-PA 321 GF15596-PA 1..321 1..321 1712 99.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25111-PA 321 GG25111-PA 1..321 1..321 1700 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11019-PA 321 GH11019-PA 1..321 1..321 1654 93.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-PA 321 CG9078-PA 1..321 1..321 1742 100 Plus
ifc-PB 102 CG9078-PB 1..102 220..321 569 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17538-PA 321 GI17538-PA 1..321 1..321 1646 92.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19048-PA 295 GL19048-PA 1..295 1..321 1525 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21524-PA 321 GA21524-PA 1..321 1..321 1701 98.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18588-PA 321 GM18588-PA 1..321 1..321 1705 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23376-PA 321 GD23376-PA 1..321 1..321 1716 99.4 Plus
Dsim\GD17692-PA 221 GD17692-PA 1..197 1..214 928 82.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15437-PA 321 GJ15437-PA 1..321 1..321 1657 93.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14712-PA 321 GK14712-PA 1..321 1..321 1652 93.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ifc-PA 321 GE25800-PA 1..321 1..321 1718 99.4 Plus