Clone LD15563 Report

Search the DGRC for LD15563

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:155
Well:63
Vector:pBS SK-
Associated Gene/Transcriptlink-RA
Protein status:LD15563.pep: gold
Preliminary Size:2321
Sequenced Size:1488

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13333 2001-01-01 Release 2 assignment
CG13333 2001-10-10 Blastp of sequenced clone
CG13333 2003-01-01 Sim4 clustering to Release 3
CG13333 2008-04-29 Release 5.5 accounting
CG13333 2008-08-15 Release 5.9 accounting
CG13333 2008-12-18 5.12 accounting

Clone Sequence Records

LD15563.complete Sequence

1488 bp (1488 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061201

> LD15563.complete
CTAAAACGAGATTTGCGCCAGAGTTGAAAGTCTACTTCAAACGGTTTTGA
ACTATCTCGTTGGTTAGTTGTCCTTAAACATTTGAAGTGAACGGTATGAT
TGGTGTGCTAATGCGTTTTCTCTGGTCCTTGGCCATGGTGCAGTGCATCC
AGGCTAGAGTGTCGATGCTGCCTCGTTTTTATGGACAAGACAGCGCTGTT
ATAGTGGACATCAATAGAAAATTCCCACCTAGAATGGACTCCAAGCTGCA
GAATGCCCTGTACTACAACCTGCCGGTCTACAAACTGATAAAGCCAACCA
CAACAACTACGACAACCACGACGGCTGCTCCAACCTCTGGCTATCCTGCT
GATCTCCTGAACATTGCTCACAACAAGCTGGGCCTCAAAGATCTGCCCAA
TCTCGAGGAGCTGGGCGAGATGATTGGTACGGATGGTGCCAGCGAGACCA
TAGACTATATACGCACGCTAACTGGAACGGAGGAGGGTTTGGCCCTGATG
AAACAGTATCTGGATGCCCTGCACTTCGAGGAGGCGGAGGAGGAGAATGT
GGCCGAGGAACAAGAGAAGGCTGAAGACGACGACGACGATGATGATGACA
ACACCATGGGCAATGCCAGCTACGATGAGATGCCGCAGGAAAAATCCACC
ACCACTGCAGATCCCCGTCCTGAGCTGAGTTTAATGCAGCGTTTCGGTGA
CTTTGTGAAGCAGTACAACCTGTGGTCTGGTCAGGTCACCACTACCACCA
CTCCTGCTCCGTTCATCGCTCGGCCAAGTGGCTCTTTCCAGCCCGTCTTT
GTGGCTCCTCCTCCTGCTGGCTTGAAACCTTTTCGTCCCATCCTGGTTAG
GCAGCCACTGCCGTATCACTATCCCATTCCCCTGCGTCCCGTATCGCTGG
CCACCACAAAGCCAATCCAGGTGACCACCACCACCACGACCACAACCACA
CCTGCCCCCGTGACCAAGCCACATCTCAACACGCCCAAGCTGATCATGCA
AGAGGATGCGGAGGGCAAATACTCAACATTGCCTCCGTACATCCAGCAGT
TGGCCAAAATGGCCAATATTTCGCCGCAAGTCGTGGAAATCTTTCTGGAG
CGGCAGCCCAAGTTGGCGGAACTGGCCAAGCGCCTGAGCACCCTGGCACT
CAGTCCCGAACAGACCCAGGCCATGGACACCCAGGTGCTCAAGGCCGTGC
AGCACGCACTGAGCAACAACGATGATCTTCAGCGGCTAATCGAGGCGTCC
CAGGCACTTAAGTAGGCGGAATGTGTGACTAGTCTTAAGACCATTTCAAA
TGAAATACATTTTCCATAAACCAACTAGCTTAGTGATCTCATTTTGTAAT
TGATTCCATATATAACACTAAAAATCAAATGAGTTTTAAAGTAATAATGG
GGGTTTATTTCGAATGTGTATGATCTTACAATAAATCTATTGCAGATTGT
AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD15563.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13333-RA 1450 CG13333-RA 1..1450 1..1450 7250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9443194..9444644 1..1451 7255 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13555893..13557343 1..1451 7255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13557092..13558542 1..1451 7255 100 Plus
Blast to na_te.dros performed 2019-03-16 10:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 861..905 555..599 116 78.3 Plus

LD15563.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:23:15 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9443194..9444645 1..1454 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:13 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1170 96..1265 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:26 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1170 96..1265 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:47:18 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
link-RA 1..1170 96..1265 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:09 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1170 96..1265 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:00 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
link-RA 1..1170 96..1265 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:54 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:26 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:47:18 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
link-RA 1..1394 57..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:10 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13333-RA 1..1452 1..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:00 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
link-RA 1..1394 57..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:15 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13555893..13557344 1..1454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:15 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13555893..13557344 1..1454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:15 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13555893..13557344 1..1454 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:47:18 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9443398..9444849 1..1454 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:00 Download gff for LD15563.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13557092..13558543 1..1454 99   Plus

LD15563.pep Sequence

Translation from 95 to 1264

> LD15563.pep
MIGVLMRFLWSLAMVQCIQARVSMLPRFYGQDSAVIVDINRKFPPRMDSK
LQNALYYNLPVYKLIKPTTTTTTTTTAAPTSGYPADLLNIAHNKLGLKDL
PNLEELGEMIGTDGASETIDYIRTLTGTEEGLALMKQYLDALHFEEAEEE
NVAEEQEKAEDDDDDDDDNTMGNASYDEMPQEKSTTTADPRPELSLMQRF
GDFVKQYNLWSGQVTTTTTPAPFIARPSGSFQPVFVAPPPAGLKPFRPIL
VRQPLPYHYPIPLRPVSLATTKPIQVTTTTTTTTTPAPVTKPHLNTPKLI
MQEDAEGKYSTLPPYIQQLAKMANISPQVVEIFLERQPKLAELAKRLSTL
ALSPEQTQAMDTQVLKAVQHALSNNDDLQRLIEASQALK*

LD15563.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13704-PA 384 GF13704-PA 1..384 1..389 899 56.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20392-PA 388 GG20392-PA 1..388 1..389 1557 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23158-PA 413 GH23158-PA 16..413 15..389 648 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
link-PA 389 CG13333-PA 1..389 1..389 2003 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18337-PA 377 GI18337-PA 16..376 16..386 598 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17414-PA 388 GL17414-PA 1..388 1..389 991 54.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12213-PA 388 GA12213-PA 1..388 1..389 1002 55.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21479-PA 391 GM21479-PA 1..391 1..389 1691 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10976-PA 219 GD10976-PA 1..219 171..389 1053 96.3 Plus
Dsim\GD10975-PA 108 GD10975-PA 1..106 1..106 555 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19763-PA 389 GJ19763-PA 1..389 1..389 775 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15969-PA 412 GK15969-PA 1..411 4..388 905 53.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12553-PA 390 GE12553-PA 1..390 1..389 1547 88.2 Plus

LD15563.hyp Sequence

Translation from 95 to 1264

> LD15563.hyp
MIGVLMRFLWSLAMVQCIQARVSMLPRFYGQDSAVIVDINRKFPPRMDSK
LQNALYYNLPVYKLIKPTTTTTTTTTAAPTSGYPADLLNIAHNKLGLKDL
PNLEELGEMIGTDGASETIDYIRTLTGTEEGLALMKQYLDALHFEEAEEE
NVAEEQEKAEDDDDDDDDNTMGNASYDEMPQEKSTTTADPRPELSLMQRF
GDFVKQYNLWSGQVTTTTTPAPFIARPSGSFQPVFVAPPPAGLKPFRPIL
VRQPLPYHYPIPLRPVSLATTKPIQVTTTTTTTTTPAPVTKPHLNTPKLI
MQEDAEGKYSTLPPYIQQLAKMANISPQVVEIFLERQPKLAELAKRLSTL
ALSPEQTQAMDTQVLKAVQHALSNNDDLQRLIEASQALK*

LD15563.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
link-PA 389 CG13333-PA 1..389 1..389 2003 100 Plus